ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags27j03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483772.1| Oryza sativa (japonica cultivar-group), mRNA 54 6e-04
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
3dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
4dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
5dbj|AK065627.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
6gb|AC090872.1|AC090872 Drosophila melanogaster, chromosome 2L, r... 44 0.53
7gb|AC009201.4|AC009201 Drosophila melanogaster, chromosome 2L, r... 44 0.53
8dbj|AB016882.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.53
9gb|AE003653.3| Drosophila melanogaster chromosome 2L, section 62... 44 0.53
10gb|CP000110.1| Synechococcus sp. CC9605, complete genome 42 2.1
11emb|AL928907.3| Mouse DNA sequence from clone RP23-255L15 on chr... 42 2.1
12gb|AF348119.2| Homo sapiens L-glutaminase gene, complete cds; nu... 42 2.1
13gb|AC097104.18| Homo sapiens 12 BAC RP11-153M3 (Roswell Park Can... 42 2.1
14gb|AC102207.15| Mus musculus chromosome 1, clone RP24-262A17, co... 42 2.1
15gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
16gb|AY601075.1| Dunaliella salina phytoene synthase mRNA, complet... 40 8.3
17gb|AY547325.1| Dunaliella salina phytoene synthase gene, complet... 40 8.3
18ref|XM_601599.2| PREDICTED: Bos taurus similar to Butyrophilin p... 40 8.3
19ref|XM_758783.1| Theileria parva strain Muguga chromosome 4 hypo... 40 8.3
20gb|AC069286.7| Homo sapiens BAC clone RP11-261N10 from 7, comple... 40 8.3
21gb|AC136716.12| Mus musculus, clone RP23-42E21, complete sequence 40 8.3
22emb|AL110503.2|HSJ1100I6 Human DNA sequence from clone RP5-1100I... 40 8.3
23emb|AL808138.27| Mouse DNA sequence from clone RP23-84C18 on chr... 40 8.3
24gb|AC090662.9| Homo sapiens chromosome 11, clone RP11-184J19, co... 40 8.3
25gb|AC079361.17| Homo sapiens 11 BAC RP11-184J19 (Roswell Park Ca... 40 8.3
26gb|AC099515.2| Homo sapiens chromosome 5 clone RP11-455D3, compl... 40 8.3
27gb|AC008948.8| Homo sapiens chromosome 5 clone CTD-2333K2, compl... 40 8.3
28ref|XM_690749.1| PREDICTED: Danio rerio similar to G protein-cou... 40 8.3
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
30emb|BX537352.18| Mouse DNA sequence from clone RP24-410N21 on ch... 40 8.3
31gb|AC011755.7| Homo sapiens BAC clone RP11-575M22 from 2, comple... 40 8.3
32gb|AC019197.7| Homo sapiens BAC clone RP11-361O8 from 2, complet... 40 8.3
33ref|XM_223090.3| PREDICTED: Rattus norvegicus kinesin family mem... 40 8.3
34gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3 
>ref|XM_483772.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2705

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 3    atttctttaggggtaacattgatgcaccaacactgaaga 41
            |||||||||||||||| |||||||||||||  |||||||
Sbjct: 1175 atttctttaggggtaaaattgatgcaccaaagctgaaga 1213



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 424  gcagcagcaagcccagcatatgtttgttccttt 456
            ||||||||||||||| ||||||||||| |||||
Sbjct: 1638 gcagcagcaagcccaacatatgtttgtcccttt 1670



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 150  agaagcagcaaaagaaagggaagca 174
            |||||||||||||||||| ||||||
Sbjct: 1364 agaagcagcaaaagaaagtgaagca 1388
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                       
Query: 3        atttctttaggggtaacattgatgcaccaacactgaaga 41
                |||||||||||||||| |||||||||||||  |||||||
Sbjct: 28011186 atttctttaggggtaaaattgatgcaccaaagctgaaga 28011224



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 424      gcagcagcaagcccagcatatgtttgttccttt 456
                ||||||||||||||| ||||||||||| |||||
Sbjct: 28011649 gcagcagcaagcccaacatatgtttgtcccttt 28011681



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 150      agaagcagcaaaagaaagggaagca 174
                |||||||||||||||||| ||||||
Sbjct: 28011375 agaagcagcaaaagaaagtgaagca 28011399
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>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0562A06
          Length = 154198

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 3     atttctttaggggtaacattgatgcaccaacactgaaga 41
             |||||||||||||||| |||||||||||||  |||||||
Sbjct: 88678 atttctttaggggtaaaattgatgcaccaaagctgaaga 88716



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 424   gcagcagcaagcccagcatatgtttgttccttt 456
             ||||||||||||||| ||||||||||| |||||
Sbjct: 89141 gcagcagcaagcccaacatatgtttgtcccttt 89173



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 150   agaagcagcaaaagaaagggaagca 174
             |||||||||||||||||| ||||||
Sbjct: 88867 agaagcagcaaaagaaagtgaagca 88891
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>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0604E01
          Length = 159049

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 3    atttctttaggggtaacattgatgcaccaacactgaaga 41
            |||||||||||||||| |||||||||||||  |||||||
Sbjct: 8681 atttctttaggggtaaaattgatgcaccaaagctgaaga 8719



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 424  gcagcagcaagcccagcatatgtttgttccttt 456
            ||||||||||||||| ||||||||||| |||||
Sbjct: 9144 gcagcagcaagcccaacatatgtttgtcccttt 9176



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 150  agaagcagcaaaagaaagggaagca 174
            |||||||||||||||||| ||||||
Sbjct: 8870 agaagcagcaaaagaaagtgaagca 8894
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>dbj|AK065627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028H07, full
            insert sequence
          Length = 2705

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 3    atttctttaggggtaacattgatgcaccaacactgaaga 41
            |||||||||||||||| |||||||||||||  |||||||
Sbjct: 1175 atttctttaggggtaaaattgatgcaccaaagctgaaga 1213



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 424  gcagcagcaagcccagcatatgtttgttccttt 456
            ||||||||||||||| ||||||||||| |||||
Sbjct: 1638 gcagcagcaagcccaacatatgtttgtcccttt 1670



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 150  agaagcagcaaaagaaagggaagca 174
            |||||||||||||||||| ||||||
Sbjct: 1364 agaagcagcaaaagaaagtgaagca 1388
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>gb|AC090872.1|AC090872 Drosophila melanogaster, chromosome 2L, region 36B-36C, BAC clone
             BACR06G19, complete sequence
          Length = 178481

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 151   gaagcagcaaaagaaagggaagcacg 176
             |||| |||||||||||||||||||||
Sbjct: 91649 gaagaagcaaaagaaagggaagcacg 91674
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>gb|AC009201.4|AC009201 Drosophila melanogaster, chromosome 2L, region 36C-36C, BAC clone
             BACR19H02, complete sequence
          Length = 158475

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 151   gaagcagcaaaagaaagggaagcacg 176
             |||| |||||||||||||||||||||
Sbjct: 61386 gaagaagcaaaagaaagggaagcacg 61411
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>dbj|AB016882.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZA15
          Length = 79995

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 545   ttaccttacggaaccaatccaaatta 570
             |||||||| |||||||||||||||||
Sbjct: 39717 ttaccttatggaaccaatccaaatta 39742
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>gb|AE003653.3| Drosophila melanogaster chromosome 2L, section 62 of 83 of the complete
              sequence
          Length = 247634

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 151    gaagcagcaaaagaaagggaagcacg 176
              |||| |||||||||||||||||||||
Sbjct: 151779 gaagaagcaaaagaaagggaagcacg 151804
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 421     actgcagcagcaagcccagca 441
               |||||||||||||||||||||
Sbjct: 1566001 actgcagcagcaagcccagca 1565981
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>emb|AL928907.3| Mouse DNA sequence from clone RP23-255L15 on chromosome 11, complete
             sequence
          Length = 50722

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 237   ttatgcctccacatgtgcatcaagt 261
             ||||| |||||||||||||||||||
Sbjct: 34042 ttatgtctccacatgtgcatcaagt 34018
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>gb|AF348119.2| Homo sapiens L-glutaminase gene, complete cds; nuclear gene for
            mitochondrial product
          Length = 18084

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 572  aggagggtatgacaagtgcag 592
            |||||||||||||||||||||
Sbjct: 7306 aggagggtatgacaagtgcag 7326
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>gb|AC097104.18| Homo sapiens 12 BAC RP11-153M3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 106340

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 572   aggagggtatgacaagtgcag 592
             |||||||||||||||||||||
Sbjct: 14979 aggagggtatgacaagtgcag 14959
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>gb|AC102207.15| Mus musculus chromosome 1, clone RP24-262A17, complete sequence
          Length = 143489

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 462   tccaccagccagtgattaata 482
             |||||||||||||||||||||
Sbjct: 80021 tccaccagccagtgattaata 80001
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>gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0018N12, complete sequence
          Length = 137127

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tgaagagtaagaggaagagg 121
             ||||||||||||||||||||
Sbjct: 61950 tgaagagtaagaggaagagg 61969
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>gb|AY601075.1| Dunaliella salina phytoene synthase mRNA, complete cds
          Length = 1260

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 ctgcagcagcaagcccagca 441
           ||||||||||||||||||||
Sbjct: 205 ctgcagcagcaagcccagca 224
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>gb|AY547325.1| Dunaliella salina phytoene synthase gene, complete cds
          Length = 2983

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 ctgcagcagcaagcccagca 441
           ||||||||||||||||||||
Sbjct: 205 ctgcagcagcaagcccagca 224
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>ref|XM_601599.2| PREDICTED: Bos taurus similar to Butyrophilin precursor (BT)
           (Butyrophilin subfamily 1 member A1) (LOC523303), mRNA
          Length = 1757

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 catcaagtaggttctaccca 273
           ||||||||||||||||||||
Sbjct: 755 catcaagtaggttctaccca 774
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>ref|XM_758783.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
            (TP04_0241) partial mRNA
          Length = 4290

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 99   atgtgaagagtaagaggaagagggactt 126
            ||||||||||||| |||||||| |||||
Sbjct: 2357 atgtgaagagtaacaggaagagtgactt 2384
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>gb|AC069286.7| Homo sapiens BAC clone RP11-261N10 from 7, complete sequence
          Length = 157118

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    agtccaaaacatgtgaagagtaag 112
             ||||||| ||||||||||||||||
Sbjct: 73144 agtccaacacatgtgaagagtaag 73167
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>gb|AC136716.12| Mus musculus, clone RP23-42E21, complete sequence
          Length = 259603

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 149    gagaagcagcaaaagaaagggaag 172
              ||||| ||||||||||||||||||
Sbjct: 186093 gagaaacagcaaaagaaagggaag 186116
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>emb|AL110503.2|HSJ1100I6 Human DNA sequence from clone RP5-1100I6 on chromosome 20 Contains a
             novel gene, a novel gene (FLJ33581) and a CpG island,
             complete sequence
          Length = 161525

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 149   gagaagcagcaaaagaaagggaag 172
             ||||||||| ||||||||||||||
Sbjct: 86431 gagaagcaggaaaagaaagggaag 86408
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>emb|AL808138.27| Mouse DNA sequence from clone RP23-84C18 on chromosome 4, complete
             sequence
          Length = 84705

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   agatgaccctggaaacagtg 149
             ||||||||||||||||||||
Sbjct: 71266 agatgaccctggaaacagtg 71285
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>gb|AC090662.9| Homo sapiens chromosome 11, clone RP11-184J19, complete sequence
          Length = 177722

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tgaagagtaagaggaagagg 121
             ||||||||||||||||||||
Sbjct: 54625 tgaagagtaagaggaagagg 54606
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>gb|AC079361.17| Homo sapiens 11 BAC RP11-184J19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177714

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    tgaagagtaagaggaagagg 121
              ||||||||||||||||||||
Sbjct: 123097 tgaagagtaagaggaagagg 123116
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>gb|AC099515.2| Homo sapiens chromosome 5 clone RP11-455D3, complete sequence
          Length = 150339

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ctgctgctattttaccaact 226
              ||||||||||||||||||||
Sbjct: 112969 ctgctgctattttaccaact 112988
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>gb|AC008948.8| Homo sapiens chromosome 5 clone CTD-2333K2, complete sequence
          Length = 176656

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    ctgctgctattttaccaact 226
              ||||||||||||||||||||
Sbjct: 102812 ctgctgctattttaccaact 102793
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>ref|XM_690749.1| PREDICTED: Danio rerio similar to G protein-coupled receptor kinase
           5 (G protein-coupled receptor kinase GRK5) (LOC567452),
           mRNA
          Length = 1937

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 443 atgtttgttcctttgccggt 462
           ||||||||||||||||||||
Sbjct: 1   atgtttgttcctttgccggt 20
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 102     tgaagagtaagaggaagagg 121
               ||||||||||||||||||||
Sbjct: 5095763 tgaagagtaagaggaagagg 5095744
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>emb|BX537352.18| Mouse DNA sequence from clone RP24-410N21 on chromosome 4, complete
             sequence
          Length = 84495

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   agatgaccctggaaacagtg 149
             ||||||||||||||||||||
Sbjct: 64952 agatgaccctggaaacagtg 64971
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>gb|AC011755.7| Homo sapiens BAC clone RP11-575M22 from 2, complete sequence
          Length = 179110

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 138   ctggaaacagtgagaagcagcaaaagaa 165
             |||||||||| |||| ||||||||||||
Sbjct: 83054 ctggaaacagagagatgcagcaaaagaa 83081
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>gb|AC019197.7| Homo sapiens BAC clone RP11-361O8 from 2, complete sequence
          Length = 178255

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 145   cagtgagaagcagcaaaagaaagg 168
             |||||||||| |||||||||||||
Sbjct: 98211 cagtgagaaggagcaaaagaaagg 98188
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>ref|XM_223090.3| PREDICTED: Rattus norvegicus kinesin family member 21B (predicted)
            (Kif21b_predicted), mRNA
          Length = 5469

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   aggatgtgccagtcagccac 85
            ||||||||||||||||||||
Sbjct: 4463 aggatgtgccagtcagccac 4444
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 102     tgaagagtaagaggaagagg 121
               ||||||||||||||||||||
Sbjct: 5162240 tgaagagtaagaggaagagg 5162221


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,358,999
Number of Sequences: 3902068
Number of extensions: 5358999
Number of successful extensions: 110941
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110752
Number of HSP's gapped (non-prelim): 189
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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