| Clone Name | bags27h20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122I17, full insert sequence Length = 1238 Score = 311 bits (157), Expect = 1e-81 Identities = 331/389 (85%) Strand = Plus / Plus Query: 50 aaaacaggattgccttgcctctgagtgtcttgggtaggacaaagacaaacatcaatttga 109 |||| ||||| || |||||||| ||||| ||| | ||||||||||||||||||| |||| Sbjct: 376 aaaataggatcgcattgcctctaagtgtattgagcaggacaaagacaaacatcagcttga 435 Query: 110 tggcagacgatttcaaaacactggttaacaattactcccttgccgggcttgttgtgggtt 169 |||| || |||||| ||| |||| || ||||||||||| || ||||||| || | Sbjct: 436 tggcggatgatttcgtaactttggtctcaaaatactcccttgcaggctttgttgtcggct 495 Query: 170 atccattcaacttacagggtcaatcttctccagatgcatcacaagtaagccttctcgtag 229 |||| |||||||| |||||||||||| |||| |||||| ||||||||| ||||| || | Sbjct: 496 atccgttcaacttgcagggtcaatctagtccaaatgcattacaagtaaggcttcttgttg 555 Query: 230 gagaactttgtaaaactgggaaacttgatgatttgagctacacatattgggatgaaaatt 289 |||| || |||||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct: 556 gagagctctgtaaaactgggaaacttgatgatatgagttacacctattgggatgaaaatt 615 Query: 290 ttacctcaaagtgcgtagaagcccttttaaatcctctgaacctaaacgatcgagttgaga 349 ||||||| ||||| ||||||||||||||| |||||||||| ||| | || | |||||| | Sbjct: 616 ttacctcgaagtgtgtagaagcccttttacatcctctgaaactacatgacccagttgaaa 675 Query: 350 cgaaaacaatgacagataaatttgctgcagtttgcatactccagggttatttagataaca 409 | |||||||||||||||||||||||||| ||||||||||||||| | || ||||||| | Sbjct: 676 ccaaaacaatgacagataaatttgctgcggtttgcatactccagcgctacctagataata 735 Query: 410 tgaacagagcattgacatctgctgataat 438 ||||||||| ||||| |||||| |||||| Sbjct: 736 tgaacagagaattgagatctgcagataat 764
>ref|NM_191365.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1704 Score = 242 bits (122), Expect = 1e-60 Identities = 206/234 (88%) Strand = Plus / Plus Query: 205 gcatcacaagtaagccttctcgtaggagaactttgtaaaactgggaaacttgatgatttg 264 |||| ||||||||| ||||| || ||||| || |||||||||||||||||||||||| || Sbjct: 208 gcattacaagtaaggcttcttgttggagagctctgtaaaactgggaaacttgatgatatg 267 Query: 265 agctacacatattgggatgaaaattttacctcaaagtgcgtagaagcccttttaaatcct 324 || ||||| ||||||||||||||||||||||| ||||| ||||||||||||||| ||||| Sbjct: 268 agttacacctattgggatgaaaattttacctcgaagtgtgtagaagcccttttacatcct 327 Query: 325 ctgaacctaaacgatcgagttgagacgaaaacaatgacagataaatttgctgcagtttgc 384 ||||| ||| | || | |||||| || |||||||||||||||||||||||||| |||||| Sbjct: 328 ctgaaactacatgacccagttgaaaccaaaacaatgacagataaatttgctgcggtttgc 387 Query: 385 atactccagggttatttagataacatgaacagagcattgacatctgctgataat 438 ||||||||| | || ||||||| |||||||||| ||||| |||||| |||||| Sbjct: 388 atactccagcgctacctagataatatgaacagagaattgagatctgcagataat 441 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 50 aaaacaggattgccttgcctctgagtgtcttgggtaggacaaagacaaacatcaatttga 109 |||| ||||| || |||||||| ||||| ||| | ||||||||||||||||||| |||| Sbjct: 125 aaaataggatcgcattgcctctaagtgtattgagcaggacaaagacaaacatcagcttga 184 Query: 110 tggcagacgatttc 123 |||| || |||||| Sbjct: 185 tggcggatgatttc 198
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 111 bits (56), Expect = 2e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 299 agtgcgtagaagcccttttaaatcctctgaacctaaacgatcgagttgagacgaaaacaa 358 |||| ||||||||||||||| |||||||||| ||| | || | |||||| || ||||||| Sbjct: 32185748 agtgtgtagaagcccttttacatcctctgaaactacatgacccagttgaaaccaaaacaa 32185807 Query: 359 tgacagataaatttgctgcagtttgcatactccagg 394 ||||||||||||||||||| |||||||||||||||| Sbjct: 32185808 tgacagataaatttgctgcggtttgcatactccagg 32185843 Score = 111 bits (56), Expect = 2e-21 Identities = 83/92 (90%) Strand = Plus / Plus Query: 205 gcatcacaagtaagccttctcgtaggagaactttgtaaaactgggaaacttgatgatttg 264 |||| ||||||||| ||||| || ||||| || |||||||||||||||||||||||| || Sbjct: 32185511 gcattacaagtaaggcttcttgttggagagctctgtaaaactgggaaacttgatgatatg 32185570 Query: 265 agctacacatattgggatgaaaattttacctc 296 || ||||| ||||||||||||||||||||||| Sbjct: 32185571 agttacacctattgggatgaaaattttacctc 32185602 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 142 tactcccttgccgggcttgttgtgggttatccattcaacttacagggtcaatct 195 ||||||||||| || ||||||| || ||||| |||||||| |||||||||||| Sbjct: 32185360 tactcccttgcaggctttgttgtcggctatccgttcaacttgcagggtcaatct 32185413 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 85 aggacaaagacaaacatcaatttgatggcagacgatttc 123 ||||||||||||||||||| |||||||| || |||||| Sbjct: 32184830 aggacaaagacaaacatcagcttgatggcggatgatttc 32184868
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 111 bits (56), Expect = 2e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 299 agtgcgtagaagcccttttaaatcctctgaacctaaacgatcgagttgagacgaaaacaa 358 |||| ||||||||||||||| |||||||||| ||| | || | |||||| || ||||||| Sbjct: 56501 agtgtgtagaagcccttttacatcctctgaaactacatgacccagttgaaaccaaaacaa 56560 Query: 359 tgacagataaatttgctgcagtttgcatactccagg 394 ||||||||||||||||||| |||||||||||||||| Sbjct: 56561 tgacagataaatttgctgcggtttgcatactccagg 56596 Score = 111 bits (56), Expect = 2e-21 Identities = 83/92 (90%) Strand = Plus / Plus Query: 205 gcatcacaagtaagccttctcgtaggagaactttgtaaaactgggaaacttgatgatttg 264 |||| ||||||||| ||||| || ||||| || |||||||||||||||||||||||| || Sbjct: 56264 gcattacaagtaaggcttcttgttggagagctctgtaaaactgggaaacttgatgatatg 56323 Query: 265 agctacacatattgggatgaaaattttacctc 296 || ||||| ||||||||||||||||||||||| Sbjct: 56324 agttacacctattgggatgaaaattttacctc 56355 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 142 tactcccttgccgggcttgttgtgggttatccattcaacttacagggtcaatct 195 ||||||||||| || ||||||| || ||||| |||||||| |||||||||||| Sbjct: 56113 tactcccttgcaggctttgttgtcggctatccgttcaacttgcagggtcaatct 56166 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 85 aggacaaagacaaacatcaatttgatggcagacgatttc 123 ||||||||||||||||||| |||||||| || |||||| Sbjct: 55583 aggacaaagacaaacatcagcttgatggcggatgatttc 55621
>emb|AL355102.5|CNS05TCL Human chromosome 14 DNA sequence BAC R-404P21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 201844 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 277 tgggatgaaaattttacctcaa 298 |||||||||||||||||||||| Sbjct: 146750 tgggatgaaaattttacctcaa 146729
>gb|AC166830.3| Mus musculus BAC clone RP23-246O1 from chromosome 13, complete sequence Length = 213487 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 476 catttgcctcttaaaagttcc 496 ||||||||||||||||||||| Sbjct: 205936 catttgcctcttaaaagttcc 205956
>gb|AC161000.5| Mus musculus BAC clone RP23-51A9 from chromosome 13, complete sequence Length = 216751 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 476 catttgcctcttaaaagttcc 496 ||||||||||||||||||||| Sbjct: 93982 catttgcctcttaaaagttcc 94002
>gb|AC090457.6| Homo sapiens chromosome 18, clone RP11-357H3, complete sequence Length = 173765 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 tttcaaaacactggttaacaattac 144 ||||||| ||||||||||||||||| Sbjct: 51846 tttcaaagcactggttaacaattac 51822
>gb|AC011095.5|AC011095 Homo sapiens, clone RP11-1O2, complete sequence Length = 157051 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 tttcaaaacactggttaacaattac 144 ||||||| ||||||||||||||||| Sbjct: 119643 tttcaaagcactggttaacaattac 119619
>gb|AY665587.1| Rattus norvegicus strain CD aldehyde oxidase 2 (Aoh2) mRNA, complete cds Length = 4879 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aaattttacctcaaagtgcg 304 |||||||||||||||||||| Sbjct: 1689 aaattttacctcaaagtgcg 1708
>gb|AC105981.10| Mus musculus chromosome 8, clone RP24-210I22, complete sequence Length = 167656 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 atgatttgagctacacatat 276 |||||||||||||||||||| Sbjct: 30147 atgatttgagctacacatat 30128
>gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence Length = 165269 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 gagtgtcttgggtaggacaaagac 95 |||||||||||| ||||||||||| Sbjct: 29426 gagtgtcttgggaaggacaaagac 29403
>gb|AC126257.4| Mus musculus BAC clone RP24-247A8 from chromosome 9, complete sequence Length = 174764 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 acagggtcaatcttctccag 202 |||||||||||||||||||| Sbjct: 27431 acagggtcaatcttctccag 27450
>emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in linkage group 3, complete sequence Length = 182043 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 gagtgtcttgggtaggacaaagac 95 |||||||||||| ||||||||||| Sbjct: 158151 gagtgtcttgggaaggacaaagac 158174
>gb|AC102819.5| Mus musculus chromosome 8, clone RP23-117H21, complete sequence Length = 191116 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 atgatttgagctacacatat 276 |||||||||||||||||||| Sbjct: 181228 atgatttgagctacacatat 181209
>gb|AY325166.1| Rattus norvegicus Aa2-245 mRNA, complete cds Length = 2878 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aaattttacctcaaagtgcg 304 |||||||||||||||||||| Sbjct: 2240 aaattttacctcaaagtgcg 2259
>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0088N01, complete sequence Length = 123954 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 attgggatgaaaattttacc 294 |||||||||||||||||||| Sbjct: 41111 attgggatgaaaattttacc 41130
>emb|AL607091.12| Mouse DNA sequence from clone RP23-287F5 on chromosome 11 Contains the 3' end of the gene for a novel protein similar to human PDZ domain containing guanine nucleotide exchange factor (GEF) 2 PDZGEF2 and the 3' end of the gene for a novel protein similar to human non-kinase Cdc42 effector protein SPEC2, complete sequence Length = 192912 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 cgcctgtcagtctttcttgg 519 |||||||||||||||||||| Sbjct: 181741 cgcctgtcagtctttcttgg 181760
>emb|CR925757.8| Zebrafish DNA sequence from clone CH211-208H16 in linkage group 5, complete sequence Length = 154617 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 gaaaacaatgacagataaat 370 |||||||||||||||||||| Sbjct: 63963 gaaaacaatgacagataaat 63982
>emb|BX649211.10| Zebrafish DNA sequence from clone DKEY-215O18 in linkage group 3, complete sequence Length = 125992 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 gagtgtcttgggtaggacaaagac 95 |||||||||||| ||||||||||| Sbjct: 46080 gagtgtcttgggaaggacaaagac 46103
>dbj|AK095653.1| Homo sapiens cDNA FLJ38334 fis, clone FCBBF3026236 Length = 2721 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 acatattgggatgaaaattt 290 |||||||||||||||||||| Sbjct: 1047 acatattgggatgaaaattt 1028
>dbj|AK139536.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020003J24 product:unclassifiable, full insert sequence Length = 3298 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 cgcctgtcagtctttcttgg 519 |||||||||||||||||||| Sbjct: 1533 cgcctgtcagtctttcttgg 1552
>gb|AC073333.5| Homo sapiens BAC clone RP11-455J15 from 7, complete sequence Length = 165616 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 acaaagacaaacatcaattt 107 |||||||||||||||||||| Sbjct: 52765 acaaagacaaacatcaattt 52746
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 aaagacaaacatcaatttga 109 |||||||||||||||||||| Sbjct: 13060491 aaagacaaacatcaatttga 13060510
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 attgggatgaaaattttacc 294 |||||||||||||||||||| Sbjct: 5309104 attgggatgaaaattttacc 5309085
>emb|BX817085.1|CNS0ABU3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH84ZH11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 402 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 gtttctgaccgcaaaacagg 57 |||||||||||||||||||| Sbjct: 256 gtttctgaccgcaaaacagg 237
>gb|AC108049.5| Homo sapiens BAC clone RP11-325P16 from 2, complete sequence Length = 89604 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 acatattgggatgaaaattt 290 |||||||||||||||||||| Sbjct: 75415 acatattgggatgaaaattt 75434
>ref|XM_579192.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_001008523 (LOC497839), mRNA Length = 4880 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aaattttacctcaaagtgcg 304 |||||||||||||||||||| Sbjct: 1690 aaattttacctcaaagtgcg 1709
>gb|AC098485.6| Homo sapiens BAC clone CTD-2053I13 from 2, complete sequence Length = 88404 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gacaaacatcaatttgatgg 112 |||||||||||||||||||| Sbjct: 69493 gacaaacatcaatttgatgg 69474
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 attgggatgaaaattttacc 294 |||||||||||||||||||| Sbjct: 5375581 attgggatgaaaattttacc 5375562
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 aaagacaaacatcaatttga 109 |||||||||||||||||||| Sbjct: 13014765 aaagacaaacatcaatttga 13014784
>ref|NM_001008523.1| Rattus norvegicus similar to aldehyde oxidase structural homolog 2 (RGD1311975), mRNA Length = 4879 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aaattttacctcaaagtgcg 304 |||||||||||||||||||| Sbjct: 1689 aaattttacctcaaagtgcg 1708
>emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148110 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 aaagacaaacatcaatttga 109 |||||||||||||||||||| Sbjct: 7477 aaagacaaacatcaatttga 7458
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 aaagacaaacatcaatttga 109 |||||||||||||||||||| Sbjct: 49694 aaagacaaacatcaatttga 49713
>dbj|AB058780.1| Homo sapiens mRNA for KIAA1877 protein, partial cds Length = 6782 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 acatattgggatgaaaattt 290 |||||||||||||||||||| Sbjct: 2956 acatattgggatgaaaattt 2937 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,774,861 Number of Sequences: 3902068 Number of extensions: 4774861 Number of successful extensions: 90152 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90002 Number of HSP's gapped (non-prelim): 150 length of query: 532 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 509 effective length of database: 17,143,297,704 effective search space: 8725938531336 effective search space used: 8725938531336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)