>ANS4B_MOUSE (Q8K3X6) Ankyrin repeat and SAM domain-containing protein 4B|
           (Harmonin-interacting ankyrin repeat-containing protein)
           (Harp)
          Length = 423

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
 Frame = -2

Query: 438 ETSSQNPEKEDAACRNHVMNASATESPKCRQASREYALHKCTSHMKKTVRLAEAQAAENM 259
           + ++   +KE  A  +       T +PK     +E AL      MK+  RL E    +  
Sbjct: 103 DAAASREQKECVALLDKAATVQNTMNPKRVTRLKEQALKNARKQMKECERLQERHQNKMA 162

Query: 258 KIATAKSIRTMNNKLSAV*RSFLFLRAKISLQARNRL-HISCRINDTFK*K 109
           +  + +   T+++  S + RSFL      S  +  R   +S  I DTFK K
Sbjct: 163 RTYSKEDSGTISSSHSTLSRSFL------STTSAGRFGSLSKGIKDTFKIK 207

>PKR2_BOVIN (Q8SPN1) Prokineticin receptor 2 (PK-R2) (G-protein coupled|
           receptor 73-like 1) (G-protein coupled receptor I5E)
          Length = 384

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
 Frame = +2

Query: 122 VSLILQLMWSLFLACKDIFALRNKK------------DLHTADNLLFIVLIDFAVAIFMF 265
           VS+++ +  + F     +F ++N+K             L+     LF+  I+F   +F  
Sbjct: 180 VSILISIPSAYFTKETVLFIVKNQKKIFCGQVWPVDQQLYYKSYFLFVFGIEFLGPVFTM 239

Query: 266 SAACASASLTVFF--MWDVHLCKAYSRLACRHFGLSVALAFITWFLQAASSFSGFWLLVS 439
           +   A  S  ++F  +      +   RL CR   + V +  +T ++   + F GF ++  
Sbjct: 240 TLCYARISRELWFKAVPGFQTEQIRKRLRCRRKTVLVLMCILTAYVLCWAPFYGFTIVRD 299

Query: 440 FF*GVF 457
           FF  VF
Sbjct: 300 FFPTVF 305

>RL24_CICAR (O65743) 60S ribosomal protein L24|
          Length = 164

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 387 VMNASATESPKCRQASREYALHKCTSHMKKTVRLAEAQAAE 265
           V+    TE P+ R A+RE AL +    +KKT    +A+ AE
Sbjct: 92  VIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAE 132

>RL24_PRUAV (Q9FUL4) 60S ribosomal protein L24|
          Length = 186

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 387 VMNASATESPKCRQASREYALHKCTSHMKKTVRLAEAQAAENMK 256
           V+    TE P+ R A+RE AL +    +KKT    +A+ AE  K
Sbjct: 92  VIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTK 135

>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2|
           precursor (LTBP-2)
          Length = 1821

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -3

Query: 446 RRTKPVARTRRK----KMQPAGXXXXTPALPKARSAGRRAASMP 327
           RR +P A+TRR     + QPA      PALP+  +  R  A+ P
Sbjct: 113 RRVQPPAQTRRSTPLGQQQPAPRTRAAPALPRLGTPQRSGAAPP 156

>VME1_CVHSA (P59596) E1 glycoprotein (Matrix glycoprotein) (Membrane|
           glycoprotein)
          Length = 221

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 71  MVSGFGYSNYSAFFYLNVSLILQLMWSLFLAC 166
           M+  F YSN + F Y+   + L L+W + LAC
Sbjct: 32  MLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63

>VME1_BSCR3 (Q3I5J2) E1 glycoprotein (Matrix glycoprotein) (Membrane|
           glycoprotein)
          Length = 221

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 71  MVSGFGYSNYSAFFYLNVSLILQLMWSLFLAC 166
           M+  F YSN + F Y+   + L L+W + LAC
Sbjct: 32  MLLQFAYSNRNRFLYIIKLVFLWLLWPVTLAC 63

>VME1_CVH22 (P15422) E1 glycoprotein (Matrix glycoprotein) (Membrane|
           glycoprotein)
          Length = 225

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 65  FAMVSGFGYSNYSAFFYLNVSLILQLMWSLFLA 163
           F ++  FG+  YS  FY    L+L L+W L LA
Sbjct: 28  FIVILQFGHYKYSRLFYGLKMLVLWLLWPLVLA 60

>BARH1_DROME (Q24255) Homeobox protein B-H1 (Homeobox protein BarH1)|
          Length = 544

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 12/128 (9%)
 Frame = -1

Query: 541 YHHLNTRMELTHD----FGMEP*HSITFDPQTKHTLEERNQ*PEPGERRCSLQEPRDERQ 374
           +HHL+T  +  H     +G++P       P   H++         G    +    +  R 
Sbjct: 23  HHHLSTLQQQHHQHHLHYGLQP-------PAVAHSIHSTTTMSSGGSTTTASGIGKPNRS 75

Query: 373 RYRKPEVPAGEPRVCL-------AQVHIPHEENSQARGGTGC*EHENRHGEINQNN-EQ* 218
           R+   ++ AG              Q+H  +  N+    G     H N +  IN +N E  
Sbjct: 76  RFMINDILAGSAAAAFYKQQQHHQQLHHHNNNNNSGSSGGSSPAHSNNNNNINGDNCEAS 135

Query: 217 IIRGVKIL 194
            + GV +L
Sbjct: 136 NVAGVGVL 143

>VME1_CVMJH (P08549) E1 glycoprotein (Matrix glycoprotein) (Membrane|
           glycoprotein)
          Length = 228

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 83  FGYSNYSAFFYLNVSLILQLMWSLFLAC---KDIFALRN 190
           FGY++ S F Y+   +IL LMW L +       ++AL N
Sbjct: 43  FGYTSRSMFIYVVKMIILWLMWPLIIVLCMFNCVYALNN 81

>YUW5_CAEEL (P52717) Putative serine carboxypeptidase F41C3.5 precursor (EC|
           3.4.16.-)
          Length = 469

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 444 KNETSSQNPEKEDAACRNHVMNASATESPKCRQA 343
           KN++ SQ P K D  C N     S   +PK R+A
Sbjct: 311 KNKSQSQKPLKADVPCLNDTEMLSYMNNPKVRKA 344

>5HT5B_MOUSE (P31387) 5-hydroxytryptamine 5B receptor (5-HT-5B) (Serotonin|
           receptor 5B)
          Length = 370

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 5   GHGSGMVLRLSQCVFASASTFAMVSGFGYSNYSAFFYLNVSLILQLMWSLFLACKDIFAL 184
           G G     RL +C  +   ++A+ S  G       FYL ++++L + W ++ A K  F  
Sbjct: 193 GWGEAYDARLQRCQVSQEPSYAVFSTCGA------FYLPLAVVLFVYWKIYKAAKFRFGR 246

Query: 185 RNK 193
           R +
Sbjct: 247 RRR 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,260,912
Number of Sequences: 219361
Number of extensions: 1585279
Number of successful extensions: 4226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4225
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)