| Clone Name | bags27f23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469495.1| Oryza sativa (japonica cultivar-group), mRNA Length = 662 Score = 283 bits (143), Expect = 3e-73 Identities = 230/259 (88%) Strand = Plus / Plus Query: 186 ctccggcggctggccaaggggcaagcgcttccgcgccggcgacgtgctgctgttcaagta 245 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 141 ctccggcggctggctcaggggcaagcgcttccgcgccggcgacgtgctcgtgttcaagta 200 Query: 246 cgggcgtggggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgc 305 | | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 201 cagcccgtcggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgc 260 Query: 306 ggcgaggggcagcaggacgtacaactccggcagtgaccgcgtcacgctctcccgcggcac 365 | ||||||| || | |||||| || ||||| ||||||||||| || | |||||||| Sbjct: 261 gccgaggggtgccaaggtgtacaagtcgggcagcgaccgcgtcaccctggcgcgcggcac 320 Query: 366 caactacttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtcac 425 ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| Sbjct: 321 caactacttcatctgcagcttccccggccactgccaggccggcatgaagatcgccgtcac 380 Query: 426 cgccgcatgatccgccggc 444 |||||| ||||| |||||| Sbjct: 381 cgccgcctgatcggccggc 399 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 98 ccgccgtgctggcgctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcga 157 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 41 ccgccgtgctggcgatggtcctcctctgcgtgctcctccacggcgagctcgccgagtcgg 100 Query: 158 aggtgtacactgtcggc 174 |||||||| |||||| Sbjct: 101 ccgtgtacaccgtcggc 117
>dbj|AK100153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023015O19, full insert sequence Length = 752 Score = 283 bits (143), Expect = 3e-73 Identities = 230/259 (88%) Strand = Plus / Plus Query: 186 ctccggcggctggccaaggggcaagcgcttccgcgccggcgacgtgctgctgttcaagta 245 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct: 254 ctccggcggctggctcaggggcaagcgcttccgcgccggcgacgtgctcgtgttcaagta 313 Query: 246 cgggcgtggggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgc 305 | | | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 cagcccgtcggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgc 373 Query: 306 ggcgaggggcagcaggacgtacaactccggcagtgaccgcgtcacgctctcccgcggcac 365 | ||||||| || | |||||| || ||||| ||||||||||| || | |||||||| Sbjct: 374 gccgaggggtgccaaggtgtacaagtcgggcagcgaccgcgtcaccctggcgcgcggcac 433 Query: 366 caactacttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtcac 425 ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| Sbjct: 434 caactacttcatctgcagcttccccggccactgccaggccggcatgaagatcgccgtcac 493 Query: 426 cgccgcatgatccgccggc 444 |||||| ||||| |||||| Sbjct: 494 cgccgcctgatcggccggc 512 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 98 ccgccgtgctggcgctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcga 157 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 154 ccgccgtgctggcgatggtcctcctctgcgtgctcctccacggcgagctcgccgagtcgg 213 Query: 158 aggtgtacactgtcggc 174 |||||||| |||||| Sbjct: 214 ccgtgtacaccgtcggc 230
>gb|AC087181.9| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0018H01 map R1538, complete sequence Length = 142712 Score = 226 bits (114), Expect = 6e-56 Identities = 171/190 (90%) Strand = Plus / Plus Query: 255 ggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgcggcgagggg 314 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 103084 ggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgcgccgagggg 103143 Query: 315 cagcaggacgtacaactccggcagtgaccgcgtcacgctctcccgcggcaccaactactt 374 || | |||||| || ||||| ||||||||||| || | ||||||||||||||||| Sbjct: 103144 tgccaaggtgtacaagtcgggcagcgaccgcgtcaccctggcgcgcggcaccaactactt 103203 Query: 375 catctgcagcgtccccggtcactgccaggccggcatgaagatggccgtcaccgccgcatg 434 |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 103204 catctgcagcttccccggccactgccaggccggcatgaagatcgccgtcaccgccgcctg 103263 Query: 435 atccgccggc 444 ||| |||||| Sbjct: 103264 atcggccggc 103273 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 98 ccgccgtgctggcgctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcga 157 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 101798 ccgccgtgctggcgatggtcctcctctgcgtgctcctccacggcgagctcgccgagtcgg 101857 Query: 158 aggtgtacactgtcggc 174 |||||||| |||||| Sbjct: 101858 ccgtgtacaccgtcggc 101874 Score = 79.8 bits (40), Expect = 8e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 186 ctccggcggctggccaaggggcaagcgcttccgcgccggcgacgtgct 233 |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 101898 ctccggcggctggctcaggggcaagcgcttccgcgccggcgacgtgct 101945 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 cggcatgaagatggccgtcaccgccg 430 |||||||||||||| ||||||||||| Sbjct: 109479 cggcatgaagatggtcgtcaccgccg 109504
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 226 bits (114), Expect = 6e-56 Identities = 171/190 (90%) Strand = Plus / Minus Query: 255 ggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgcggcgagggg 314 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 28309958 ggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgcgccgagggg 28309899 Query: 315 cagcaggacgtacaactccggcagtgaccgcgtcacgctctcccgcggcaccaactactt 374 || | |||||| || ||||| ||||||||||| || | ||||||||||||||||| Sbjct: 28309898 tgccaaggtgtacaagtcgggcagcgaccgcgtcaccctggcgcgcggcaccaactactt 28309839 Query: 375 catctgcagcgtccccggtcactgccaggccggcatgaagatggccgtcaccgccgcatg 434 |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 28309838 catctgcagcttccccggccactgccaggccggcatgaagatcgccgtcaccgccgcctg 28309779 Query: 435 atccgccggc 444 ||| |||||| Sbjct: 28309778 atcggccggc 28309769 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 324 gtacaactccggcagtgaccgcgtcacgctctcccgcggcaccaactacttcatctgcag 383 |||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 35517234 gtacaagtccggcaacgaccgcgtcaccctcgcccgcggcaccaactacttcatctgcaa 35517293 Query: 384 cgtccccggtcactgccaggccggcatgaagatggccgtcaccgccgc 431 | ||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 35517294 cttccccggccactgccaggccggcatgaagatcgccgtcaccgccgc 35517341 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 98 ccgccgtgctggcgctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcga 157 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28311244 ccgccgtgctggcgatggtcctcctctgcgtgctcctccacggcgagctcgccgagtcgg 28311185 Query: 158 aggtgtacactgtcggc 174 |||||||| |||||| Sbjct: 28311184 ccgtgtacaccgtcggc 28311168 Score = 79.8 bits (40), Expect = 8e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 186 ctccggcggctggccaaggggcaagcgcttccgcgccggcgacgtgct 233 |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 28311144 ctccggcggctggctcaggggcaagcgcttccgcgccggcgacgtgct 28311097 Score = 71.9 bits (36), Expect = 2e-09 Identities = 68/76 (89%), Gaps = 2/76 (2%) Strand = Plus / Plus Query: 220 gccggcgacgtgctgctgttcaagtacggg-cgtggggcgcacaacgtggtggcggtgaa 278 ||||||||||||||| |||||||||||| ||| || |||||||||||||||||||||| Sbjct: 35517127 gccggcgacgtgctggtgttcaagtacgactcgtcgg-cgcacaacgtggtggcggtgaa 35517185 Query: 279 cgcggcggggtacaag 294 ||| || ||||||||| Sbjct: 35517186 cgccgccgggtacaag 35517201 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 111 gctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcgaaggtgtacactgt 170 |||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||| || Sbjct: 35517006 gctggtgctcctctgcgtgctcctccacggcgagatggccgagtcggcggtgttcaccgt 35517065 Query: 171 cggc 174 |||| Sbjct: 35517066 cggc 35517069 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Plus Query: 340 gaccgcgtcacgctctcccgcggcaccaactacttcatctgcagcgtccccggtcactgc 399 |||||| |||||||| ||||||||| | |||||||||||||||| || |||| ||||| Sbjct: 8367960 gaccgcatcacgctcggccgcggcacgagctacttcatctgcagcttctccggccactgt 8368019 Query: 400 caggccggcatgaagatggccgtcaccgcc 429 || || ||||||||||||||||||||| Sbjct: 8368020 ggcgcagggatgaagatggccgtcaccgcc 8368049 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Plus Query: 372 cttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtc 423 ||||||||||||| || ||| ||||||||| ||||||||||| | |||||| Sbjct: 32599410 cttcatctgcagcttcgacggacactgccagtccggcatgaagctcgccgtc 32599461 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 405 cggcatgaagatggccgtcaccgccg 430 |||||||||||||| ||||||||||| Sbjct: 28303563 cggcatgaagatggtcgtcaccgccg 28303538 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 gcacaacgtggtggcggtgaacgc 281 ||||||||||||||||||| |||| Sbjct: 8367884 gcacaacgtggtggcggtggacgc 8367907
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 226 bits (114), Expect = 6e-56 Identities = 171/190 (90%) Strand = Plus / Minus Query: 255 ggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgcggcgagggg 314 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 28401282 ggcgcacaacgtggtggcggtgaacgcggcggggtacaagtcgtgcagcgcgccgagggg 28401223 Query: 315 cagcaggacgtacaactccggcagtgaccgcgtcacgctctcccgcggcaccaactactt 374 || | |||||| || ||||| ||||||||||| || | ||||||||||||||||| Sbjct: 28401222 tgccaaggtgtacaagtcgggcagcgaccgcgtcaccctggcgcgcggcaccaactactt 28401163 Query: 375 catctgcagcgtccccggtcactgccaggccggcatgaagatggccgtcaccgccgcatg 434 |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 28401162 catctgcagcttccccggccactgccaggccggcatgaagatcgccgtcaccgccgcctg 28401103 Query: 435 atccgccggc 444 ||| |||||| Sbjct: 28401102 atcggccggc 28401093 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 324 gtacaactccggcagtgaccgcgtcacgctctcccgcggcaccaactacttcatctgcag 383 |||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 35607306 gtacaagtccggcaacgaccgcgtcaccctcgcccgcggcaccaactacttcatctgcaa 35607365 Query: 384 cgtccccggtcactgccaggccggcatgaagatggccgtcaccgccgc 431 | ||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 35607366 cttccccggccactgccaggccggcatgaagatcgccgtcaccgccgc 35607413 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 98 ccgccgtgctggcgctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcga 157 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28402568 ccgccgtgctggcgatggtcctcctctgcgtgctcctccacggcgagctcgccgagtcgg 28402509 Query: 158 aggtgtacactgtcggc 174 |||||||| |||||| Sbjct: 28402508 ccgtgtacaccgtcggc 28402492 Score = 79.8 bits (40), Expect = 8e-12 Identities = 46/48 (95%) Strand = Plus / Minus Query: 186 ctccggcggctggccaaggggcaagcgcttccgcgccggcgacgtgct 233 |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 28402468 ctccggcggctggctcaggggcaagcgcttccgcgccggcgacgtgct 28402421 Score = 71.9 bits (36), Expect = 2e-09 Identities = 68/76 (89%), Gaps = 2/76 (2%) Strand = Plus / Plus Query: 220 gccggcgacgtgctgctgttcaagtacggg-cgtggggcgcacaacgtggtggcggtgaa 278 ||||||||||||||| |||||||||||| ||| || |||||||||||||||||||||| Sbjct: 35607199 gccggcgacgtgctggtgttcaagtacgactcgtcgg-cgcacaacgtggtggcggtgaa 35607257 Query: 279 cgcggcggggtacaag 294 ||| || ||||||||| Sbjct: 35607258 cgccgccgggtacaag 35607273 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 111 gctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcgaaggtgtacactgt 170 |||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||| || Sbjct: 35607078 gctggtgctcctctgcgtgctcctccacggcgagatggccgagtcggcggtgttcaccgt 35607137 Query: 171 cggc 174 |||| Sbjct: 35607138 cggc 35607141 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Plus Query: 340 gaccgcgtcacgctctcccgcggcaccaactacttcatctgcagcgtccccggtcactgc 399 |||||| |||||||| ||||||||| | |||||||||||||||| || |||| ||||| Sbjct: 8365795 gaccgcatcacgctcggccgcggcacgagctacttcatctgcagcttctccggccactgt 8365854 Query: 400 caggccggcatgaagatggccgtcaccgcc 429 || || ||||||||||||||||||||| Sbjct: 8365855 ggcgcagggatgaagatggccgtcaccgcc 8365884 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Plus Query: 372 cttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtc 423 ||||||||||||| || ||| ||||||||| ||||||||||| | |||||| Sbjct: 32689920 cttcatctgcagcttcgacggacactgccagtccggcatgaagctcgccgtc 32689971 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 405 cggcatgaagatggccgtcaccgccg 430 |||||||||||||| ||||||||||| Sbjct: 28394887 cggcatgaagatggtcgtcaccgccg 28394862 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 gcacaacgtggtggcggtgaacgc 281 ||||||||||||||||||| |||| Sbjct: 8365719 gcacaacgtggtggcggtggacgc 8365742
>ref|XM_470415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 378 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 324 gtacaactccggcagtgaccgcgtcacgctctcccgcggcaccaactacttcatctgcag 383 |||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 267 gtacaagtccggcaacgaccgcgtcaccctcgcccgcggcaccaactacttcatctgcaa 326 Query: 384 cgtccccggtcactgccaggccggcatgaagatggccgtcaccgccgc 431 | ||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 327 cttccccggccactgccaggccggcatgaagatcgccgtcaccgccgc 374 Score = 71.9 bits (36), Expect = 2e-09 Identities = 68/76 (89%), Gaps = 2/76 (2%) Strand = Plus / Plus Query: 220 gccggcgacgtgctgctgttcaagtacggg-cgtggggcgcacaacgtggtggcggtgaa 278 ||||||||||||||| |||||||||||| ||| || |||||||||||||||||||||| Sbjct: 160 gccggcgacgtgctggtgttcaagtacgactcgtcgg-cgcacaacgtggtggcggtgaa 218 Query: 279 cgcggcggggtacaag 294 ||| || ||||||||| Sbjct: 219 cgccgccgggtacaag 234 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 111 gctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcgaaggtgtacactgt 170 |||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||| || Sbjct: 39 gctggtgctcctctgcgtgctcctccacggcgagatggccgagtcggcggtgttcaccgt 98 Query: 171 cggc 174 |||| Sbjct: 99 cggc 102
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 324 gtacaactccggcagtgaccgcgtcacgctctcccgcggcaccaactacttcatctgcag 383 |||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 50197 gtacaagtccggcaacgaccgcgtcaccctcgcccgcggcaccaactacttcatctgcaa 50256 Query: 384 cgtccccggtcactgccaggccggcatgaagatggccgtcaccgccgc 431 | ||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 50257 cttccccggccactgccaggccggcatgaagatcgccgtcaccgccgc 50304 Score = 71.9 bits (36), Expect = 2e-09 Identities = 68/76 (89%), Gaps = 2/76 (2%) Strand = Plus / Plus Query: 220 gccggcgacgtgctgctgttcaagtacggg-cgtggggcgcacaacgtggtggcggtgaa 278 ||||||||||||||| |||||||||||| ||| || |||||||||||||||||||||| Sbjct: 50090 gccggcgacgtgctggtgttcaagtacgactcgtcgg-cgcacaacgtggtggcggtgaa 50148 Query: 279 cgcggcggggtacaag 294 ||| || ||||||||| Sbjct: 50149 cgccgccgggtacaag 50164 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 111 gctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcgaaggtgtacactgt 170 |||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||| || Sbjct: 49969 gctggtgctcctctgcgtgctcctccacggcgagatggccgagtcggcggtgttcaccgt 50028 Query: 171 cggc 174 |||| Sbjct: 50029 cggc 50032
>dbj|AK062526.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D10, full insert sequence Length = 759 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 324 gtacaactccggcagtgaccgcgtcacgctctcccgcggcaccaactacttcatctgcag 383 |||||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 363 gtacaagtccggcaacgaccgcgtcaccctcgcccgcggcaccaactacttcatctgcaa 422 Query: 384 cgtccccggtcactgccaggccggcatgaagatggccgtcaccgccgc 431 | ||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 423 cttccccggccactgccaggccggcatgaagatcgccgtcaccgccgc 470 Score = 71.9 bits (36), Expect = 2e-09 Identities = 68/76 (89%), Gaps = 2/76 (2%) Strand = Plus / Plus Query: 220 gccggcgacgtgctgctgttcaagtacggg-cgtggggcgcacaacgtggtggcggtgaa 278 ||||||||||||||| |||||||||||| ||| || |||||||||||||||||||||| Sbjct: 256 gccggcgacgtgctggtgttcaagtacgactcgtcgg-cgcacaacgtggtggcggtgaa 314 Query: 279 cgcggcggggtacaag 294 ||| || ||||||||| Sbjct: 315 cgccgccgggtacaag 330 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 111 gctggtcctcctctgcgtgctcctccacggcgagttcgccgagtcgaaggtgtacactgt 170 |||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||| || Sbjct: 135 gctggtgctcctctgcgtgctcctccacggcgagatggccgagtcggcggtgttcaccgt 194 Query: 171 cggc 174 |||| Sbjct: 195 cggc 198
>gb|AY106946.1| Zea mays PCO103853 mRNA sequence Length = 664 Score = 137 bits (69), Expect = 4e-29 Identities = 93/101 (92%) Strand = Plus / Plus Query: 331 tccggcagtgaccgcgtcacgctctcccgcggcaccaactacttcatctgcagcgtcccc 390 ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct: 388 tccggcaacgaccgcgtcacgctggcccgcggcaccaactacttcatctgcagcatcccc 447 Query: 391 ggtcactgccaggccggcatgaagatggccgtcaccgccgc 431 || ||||||||| ||||||||||||| |||||||||||||| Sbjct: 448 ggccactgccagtccggcatgaagatcgccgtcaccgccgc 488 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 255 ggcgcacaacgtggtggcggtgaacgcggcggggtacaa 293 ||||||||||||||||| |||||||||||| || ||||| Sbjct: 312 ggcgcacaacgtggtggtggtgaacgcggccggctacaa 350
>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11, complete sequence Length = 126040 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Plus Query: 340 gaccgcgtcacgctctcccgcggcaccaactacttcatctgcagcgtccccggtcactgc 399 |||||| |||||||| ||||||||| | |||||||||||||||| || |||| ||||| Sbjct: 105216 gaccgcatcacgctcggccgcggcacgagctacttcatctgcagcttctccggccactgt 105275 Query: 400 caggccggcatgaagatggccgtcaccgcc 429 || || ||||||||||||||||||||| Sbjct: 105276 ggcgcagggatgaagatggccgtcaccgcc 105305 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 gcacaacgtggtggcggtgaacgc 281 ||||||||||||||||||| |||| Sbjct: 105140 gcacaacgtggtggcggtggacgc 105163
>dbj|AK107381.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C02, full insert sequence Length = 733 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Plus Query: 340 gaccgcgtcacgctctcccgcggcaccaactacttcatctgcagcgtccccggtcactgc 399 |||||| |||||||| ||||||||| | |||||||||||||||| || |||| ||||| Sbjct: 348 gaccgcatcacgctcggccgcggcacgagctacttcatctgcagcttctccggccactgt 407 Query: 400 caggccggcatgaagatggccgtcaccgcc 429 || || ||||||||||||||||||||| Sbjct: 408 ggcgcagggatgaagatggccgtcaccgcc 437 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 258 gcacaacgtggtggcggtgaacgc 281 ||||||||||||||||||| |||| Sbjct: 272 gcacaacgtggtggcggtggacgc 295
>gb|AY425323.1| Lilium longiflorum chemocyanin mRNA, complete cds Length = 381 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 367 aactacttcatctgcagcgtccccggtcactgccagg 403 |||||||| ||||||||||||||||| |||||||||| Sbjct: 313 aactactttatctgcagcgtccccggccactgccagg 349
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 214 ttccgcgccggcgacgtgctgctgttc 240 ||||||||||||||||||||||||||| Sbjct: 3969483 ttccgcgccggcgacgtgctgctgttc 3969457
>gb|AY108638.1| Zea mays PCO144854 mRNA sequence Length = 761 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 330 ctccggcagtgaccgcgtcacgctctcccgcggcaccaactacttcatctgcagc 384 |||||| || |||||| |||||||| || |||||||| |||||||||||||||| Sbjct: 360 ctccgggagcgaccgcatcacgctcggccccggcaccagctacttcatctgcagc 414
>ref|XM_471828.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 6462 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 366 caactacttcatctgcagcgtccccggtcactgc 399 |||||||||||||||| |||||||||| |||||| Sbjct: 6369 caactacttcatctgcggcgtccccggccactgc 6402 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 258 gcacaacgtggtggcggtgaacgcggcggggtac 291 ||||||||||||||||| || |||||||| |||| Sbjct: 6255 gcacaacgtggtggcggcgagcgcggcggagtac 6288
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 366 caactacttcatctgcagcgtccccggtcactgc 399 |||||||||||||||| |||||||||| |||||| Sbjct: 14790175 caactacttcatctgcggcgtccccggccactgc 14790142 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Minus Query: 258 gcacaacgtggtggcggtgaacgcggcggggtac 291 ||||||||||||||||| || |||||||| |||| Sbjct: 14790289 gcacaacgtggtggcggcgagcgcggcggagtac 14790256
>emb|AL663021.4|OSJN00218 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041M06, complete sequence Length = 107014 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 366 caactacttcatctgcagcgtccccggtcactgc 399 |||||||||||||||| |||||||||| |||||| Sbjct: 44113 caactacttcatctgcggcgtccccggccactgc 44080 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Minus Query: 258 gcacaacgtggtggcggtgaacgcggcggggtac 291 ||||||||||||||||| || |||||||| |||| Sbjct: 44227 gcacaacgtggtggcggcgagcgcggcggagtac 44194
>ref|XM_467622.1| Oryza sativa (japonica cultivar-group), mRNA Length = 519 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtca 424 ||||||||||||||| || || || |||||| |||||||||||||| | ||||||| Sbjct: 452 actacttcatctgcaccgagccggggcactgcaaggccggcatgaagctcgccgtca 508
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtca 424 ||||||||||||||| || || || |||||| |||||||||||||| | ||||||| Sbjct: 30486608 actacttcatctgcaccgagccggggcactgcaaggccggcatgaagctcgccgtca 30486664 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Minus Query: 236 tgttcaagtacgggcgtggggcgcacaacgtggtggcggtgaacgcggcggggtac 291 |||||||||||| | | || ||||||| ||||||| ||||| ||||||||||||| Sbjct: 31971126 tgttcaagtacgcgagcggagcgcacacggtggtggaggtgagcgcggcggggtac 31971071
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtca 424 ||||||||||||||| || || || |||||| |||||||||||||| | ||||||| Sbjct: 92656 actacttcatctgcaccgagccggggcactgcaaggccggcatgaagctcgccgtca 92712
>ref|XM_469939.1| Oryza sativa (japonica cultivar-group), mRNA Length = 408 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Plus Query: 372 cttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtc 423 ||||||||||||| || ||| ||||||||| ||||||||||| | |||||| Sbjct: 342 cttcatctgcagcttcgacggacactgccagtccggcatgaagctcgccgtc 393
>ref|XM_467895.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1055 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Plus Query: 236 tgttcaagtacgggcgtggggcgcacaacgtggtggcggtgaacgcggcggggtac 291 |||||||||||| | | || ||||||| ||||||| ||||| ||||||||||||| Sbjct: 353 tgttcaagtacgcgagcggagcgcacacggtggtggaggtgagcgcggcggggtac 408
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Minus Query: 372 cttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtc 423 ||||||||||||| || ||| ||||||||| ||||||||||| | |||||| Sbjct: 144497 cttcatctgcagcttcgacggacactgccagtccggcatgaagctcgccgtc 144446
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Minus Query: 236 tgttcaagtacgggcgtggggcgcacaacgtggtggcggtgaacgcggcggggtac 291 |||||||||||| | | || ||||||| ||||||| ||||| ||||||||||||| Sbjct: 132127 tgttcaagtacgcgagcggagcgcacacggtggtggaggtgagcgcggcggggtac 132072
>dbj|AK071537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100A12, full insert sequence Length = 1055 Score = 48.1 bits (24), Expect = 0.030 Identities = 48/56 (85%) Strand = Plus / Plus Query: 236 tgttcaagtacgggcgtggggcgcacaacgtggtggcggtgaacgcggcggggtac 291 |||||||||||| | | || ||||||| ||||||| ||||| ||||||||||||| Sbjct: 353 tgttcaagtacgcgagcggagcgcacacggtggtggaggtgagcgcggcggggtac 408
>ref|XM_476370.1| Oryza sativa (japonica cultivar-group), mRNA Length = 588 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgccaggccggcatgaag 414 |||||||||||||| |||| ||||| |||||| |||||||||||| Sbjct: 305 actacttcatctgcggcgtgcccggccactgcgccgccggcatgaag 351
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgccaggccggcatgaag 414 |||||||||||||| |||| ||||| |||||| |||||||||||| Sbjct: 290510 actacttcatctgcggcgtgcccggccactgcgccgccggcatgaag 290556 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 tcctctcctgcacctccattcc 39 |||||||||||||||||||||| Sbjct: 2829897 tcctctcctgcacctccattcc 2829876
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 366 caactacttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtca 424 |||||||||||||||| || | || || |||||| | |||||||||||| | ||||||| Sbjct: 8847897 caactacttcatctgcggcatgccgggccactgcgacgccggcatgaagctcgccgtca 8847839
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 264 cgtggtggcggtgaacgcggcgg 286 ||||||||||||||||||||||| Sbjct: 2245607 cgtggtggcggtgaacgcggcgg 2245585 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 gcgcttccgcgccggcgacgtgct 233 |||| ||||||||||||||||||| Sbjct: 4451851 gcgcgtccgcgccggcgacgtgct 4451828
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1001_B06 Length = 134810 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 366 caactacttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtca 424 |||||||||||||||| || | || || |||||| | |||||||||||| | ||||||| Sbjct: 118218 caactacttcatctgcggcatgccgggccactgcgacgccggcatgaagctcgccgtca 118160
>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0528B02 Length = 144495 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Minus Query: 366 caactacttcatctgcagcgtccccggtcactgccaggccggcatgaagatggccgtca 424 |||||||||||||||| || | || || |||||| | |||||||||||| | ||||||| Sbjct: 13526 caactacttcatctgcggcatgccgggccactgcgacgccggcatgaagctcgccgtca 13468
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgccaggccggcatgaag 414 |||||||||||||| |||| ||||| |||||| |||||||||||| Sbjct: 125374 actacttcatctgcggcgtgcccggccactgcgccgccggcatgaag 125420
>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1317D11 Length = 135043 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgccaggccggcatgaag 414 |||||||||||||| |||| ||||| |||||| |||||||||||| Sbjct: 14748 actacttcatctgcggcgtgcccggccactgcgccgccggcatgaag 14794
>dbj|AP004673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0617C02 Length = 135605 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgccaggccggcatgaag 414 |||||||||||||| |||| ||||| |||||| |||||||||||| Sbjct: 42509 actacttcatctgcggcgtgcccggccactgcgccgccggcatgaag 42555
>ref|XM_480000.1| Oryza sativa (japonica cultivar-group), mRNA Length = 573 Score = 44.1 bits (22), Expect = 0.46 Identities = 40/46 (86%) Strand = Plus / Plus Query: 369 ctacttcatctgcagcgtccccggtcactgccaggccggcatgaag 414 ||||||||||||| |||| || || |||||| | |||||||||||| Sbjct: 294 ctacttcatctgcggcgtgccggggcactgcgacgccggcatgaag 339
>ref|XM_469493.1| Oryza sativa (japonica cultivar-group), mRNA Length = 396 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 cggcatgaagatggccgtcaccgccg 430 |||||||||||||| ||||||||||| Sbjct: 366 cggcatgaagatggtcgtcaccgccg 391
>gb|AC145327.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0095J10 map near S6115, complete sequence Length = 123717 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 366 caactacttcatctgcagcgtccccggtcactgc 399 |||||||||||||||| ||||||| || |||||| Sbjct: 53567 caactacttcatctgcggcgtcccaggccactgc 53600
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 219 cgccggcgacgtgctgctgttc 240 |||||||||||||||||||||| Sbjct: 345160 cgccggcgacgtgctgctgttc 345139
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 366 caactacttcatctgcagcgtccccggtcactgc 399 |||||||||||||||| ||||||| || |||||| Sbjct: 12981670 caactacttcatctgcggcgtcccaggccactgc 12981703
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.46 Identities = 40/46 (86%) Strand = Plus / Plus Query: 369 ctacttcatctgcagcgtccccggtcactgccaggccggcatgaag 414 ||||||||||||| |||| || || |||||| | |||||||||||| Sbjct: 2142169 ctacttcatctgcggcgtgccggggcactgcgacgccggcatgaag 2142214
>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_D01 Length = 97862 Score = 44.1 bits (22), Expect = 0.46 Identities = 40/46 (86%) Strand = Plus / Plus Query: 369 ctacttcatctgcagcgtccccggtcactgccaggccggcatgaag 414 ||||||||||||| |||| || || |||||| | |||||||||||| Sbjct: 20431 ctacttcatctgcggcgtgccggggcactgcgacgccggcatgaag 20476
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1364A02 Length = 137933 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 tcctctcctgcacctccattcc 39 |||||||||||||||||||||| Sbjct: 133458 tcctctcctgcacctccattcc 133437
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 tcctctcctgcacctccattcc 39 |||||||||||||||||||||| Sbjct: 184 tcctctcctgcacctccattcc 163
>dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full insert sequence Length = 1738 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 tcctctcctgcacctccattcc 39 |||||||||||||||||||||| Sbjct: 56 tcctctcctgcacctccattcc 35
>dbj|AK061596.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C04, full insert sequence Length = 694 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 cggcatgaagatggccgtcaccgccg 430 |||||||||||||| ||||||||||| Sbjct: 521 cggcatgaagatggtcgtcaccgccg 546
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.46 Identities = 31/34 (91%) Strand = Plus / Plus Query: 366 caactacttcatctgcagcgtccccggtcactgc 399 |||||||||||||||| ||||||| || |||||| Sbjct: 13061849 caactacttcatctgcggcgtcccaggccactgc 13061882
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 219 cgccggcgacgtgctgctgtt 239 ||||||||||||||||||||| Sbjct: 1973947 cgccggcgacgtgctgctgtt 1973967
>gb|AC092400.1|AC092400 Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone BACR39L06, complete sequence Length = 178953 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 472 ccttcgcgtgactgaaatttt 492 ||||||||||||||||||||| Sbjct: 144070 ccttcgcgtgactgaaatttt 144050
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 gccggcgacgtgctgctgttc 240 ||||||||||||||||||||| Sbjct: 2479299 gccggcgacgtgctgctgttc 2479279
>gb|AE003649.2| Drosophila melanogaster chromosome 2L, section 58 of 83 of the complete sequence Length = 275699 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 472 ccttcgcgtgactgaaatttt 492 ||||||||||||||||||||| Sbjct: 245439 ccttcgcgtgactgaaatttt 245459
>ref|XM_450958.1| Oryza sativa (japonica cultivar-group), mRNA Length = 966 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgc 399 ||||||||||||||| | ||||||| |||||| Sbjct: 408 actacttcatctgcaccatccccggccactgc 439
>gb|AY691816.1| Sylvisorex lunaris voucher FMNH 144229 12S ribosomal RNA gene, partial sequence; mitochondrial Length = 967 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 438 cgccggcgcttattaactttggtt 461 ||||||||||||||||||| |||| Sbjct: 295 cgccggcgcttattaacttgggtt 272
>gb|BC036318.1| Mus musculus RIKEN cDNA 2410004N11 gene, mRNA (cDNA clone IMAGE:5369569), partial cds Length = 3705 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1336 ttcacttcctctcctgcacc 1317
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 396 ctgccaggccggcatgaagatggccgtcaccg 427 ||||||||||||||||||| | ||| |||||| Sbjct: 77383 ctgccaggccggcatgaaggtcgccatcaccg 77414
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 accgccgtgctggcgctggt 116 |||||||||||||||||||| Sbjct: 224357 accgccgtgctggcgctggt 224338
>gb|AC138311.3| Mus musculus BAC clone RP23-61L14 from chromosome 7, complete sequence Length = 181340 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 90911 ttcacttcctctcctgcacc 90930
>gb|AC122385.2| Mus musculus BAC clone RP24-72B22 from chromosome 1, complete sequence Length = 178821 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 gctgggcagtcagctccggc 192 |||||||||||||||||||| Sbjct: 134207 gctgggcagtcagctccggc 134188
>emb|CR626904.15| Zebrafish DNA sequence from clone DKEY-53D10 in linkage group 8, complete sequence Length = 203689 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cacttcctctcctgcacctc 33 |||||||||||||||||||| Sbjct: 143525 cacttcctctcctgcacctc 143544
>gb|BC049250.1| Mus musculus RIKEN cDNA 2410004N11 gene, mRNA (cDNA clone MGC:54478 IMAGE:5042309), complete cds Length = 2287 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1568 ttcacttcctctcctgcacc 1549
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gcgccggcgacgtgctgctg 237 |||||||||||||||||||| Sbjct: 1205939 gcgccggcgacgtgctgctg 1205958
>emb|AL137078.20| Human DNA sequence from clone RP1-66N13 on chromosome 20 Contains a novel gene (LOC284749) and two novel genes, complete sequence Length = 80725 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 ctcacgagttactcacgagt 534 |||||||||||||||||||| Sbjct: 10746 ctcacgagttactcacgagt 10727
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 gtcagctccggcggctggcc 200 |||||||||||||||||||| Sbjct: 3534230 gtcagctccggcggctggcc 3534249
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 tcgtgcagcgcggcgagggg 314 |||||||||||||||||||| Sbjct: 3263348 tcgtgcagcgcggcgagggg 3263367
>emb|BX323820.4| Zebrafish DNA sequence from clone CH211-251K4 in linkage group 4 Contains the gene for a novel protein similar to vertebrate calcium channel voltage-dependent alpha 2/delta subunit 1 (CACNA2D1) and a CpG island, complete sequence Length = 172228 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 accaactacttcatctgcag 383 |||||||||||||||||||| Sbjct: 135517 accaactacttcatctgcag 135498
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 caacgtggtggcggtgaacg 280 |||||||||||||||||||| Sbjct: 143274 caacgtggtggcggtgaacg 143255
>gb|AE011901.1| Xanthomonas axonopodis pv. citri str. 306, section 279 of 469 of the complete genome Length = 10146 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cagtcagctccggcggctgg 198 |||||||||||||||||||| Sbjct: 5369 cagtcagctccggcggctgg 5350
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgacgtgctgctgttcaagt 244 |||||||||||||||||||| Sbjct: 2788223 cgacgtgctgctgttcaagt 2788204
>dbj|AK168440.1| Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:I920020B10 product:Similar to GMRP-1, full insert sequence Length = 2383 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1682 ttcacttcctctcctgcacc 1663
>dbj|AK166987.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0026N07 product:similar to GMRP-1 [Homo sapiens], full insert sequence Length = 1531 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 830 ttcacttcctctcctgcacc 811
>dbj|AK171742.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830008F03 product:2410004N11Rik protein (Similar to GMRP-1) (RIKEN cDNA 2410004N11 gene), full insert sequence Length = 3806 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1489 ttcacttcctctcctgcacc 1470
>dbj|AK010404.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410004N11 product:similar to GMRP-1 [Homo sapiens], full insert sequence Length = 2181 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1454 ttcacttcctctcctgcacc 1435
>dbj|AK088807.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430026H03 product:similar to DJ108K11.3 (SIMILAR TO YEAST SUPPRESSOR PROTEIN SRP40) [Homo sapiens], full insert sequence Length = 2161 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1459 ttcacttcctctcctgcacc 1440
>dbj|AK013254.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810436J11 product:similar to GMRP-1 [Homo sapiens], full insert sequence Length = 3142 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 821 ttcacttcctctcctgcacc 802
>dbj|AK037247.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched library, clone:A030013O19 product:RIKEN cDNA 2410004N11 gene, full insert sequence Length = 2612 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 290 ttcacttcctctcctgcacc 271
>dbj|AK030202.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933421K21 product:hypothetical K+ channel tetramerisation domain containing protein, full insert sequence Length = 2402 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1693 ttcacttcctctcctgcacc 1674
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 360 cggcaccaactacttcatctgcagcgtccccggtcactgc 399 ||||||| |||||||||||| || |||||||||||||| Sbjct: 22606950 cggcacccgctacttcatctgtggcttccccggtcactgc 22606989 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 396 ctgccaggccggcatgaagatggccgtcaccg 427 ||||||||||||||||||| | ||| |||||| Sbjct: 21871949 ctgccaggccggcatgaaggtcgccatcaccg 21871980 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgc 399 ||||||||||||||| | ||||||| |||||| Sbjct: 17789419 actacttcatctgcaccatccccggccactgc 17789450
>gb|BC052712.1| Mus musculus RIKEN cDNA 2410004N11 gene, mRNA (cDNA clone IMAGE:6835402), partial cds Length = 3834 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1477 ttcacttcctctcctgcacc 1458
>gb|BC048161.1| Mus musculus RIKEN cDNA 2410004N11 gene, mRNA (cDNA clone MGC:61348 IMAGE:6417353), complete cds Length = 3815 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1475 ttcacttcctctcctgcacc 1456
>ref|NM_025888.3| Mus musculus RIKEN cDNA 2410004N11 gene (2410004N11Rik), mRNA Length = 2402 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 1693 ttcacttcctctcctgcacc 1674
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 accgccgtgctggcgctggt 116 |||||||||||||||||||| Sbjct: 2531132 accgccgtgctggcgctggt 2531113
>dbj|AP006450.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1130E07 Length = 152245 Score = 40.1 bits (20), Expect = 7.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 360 cggcaccaactacttcatctgcagcgtccccggtcactgc 399 ||||||| |||||||||||| || |||||||||||||| Sbjct: 48870 cggcacccgctacttcatctgtggcttccccggtcactgc 48909
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 396 ctgccaggccggcatgaagatggccgtcaccg 427 ||||||||||||||||||| | ||| |||||| Sbjct: 2666 ctgccaggccggcatgaaggtcgccatcaccg 2697
>dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1331F11 Length = 132205 Score = 40.1 bits (20), Expect = 7.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 360 cggcaccaactacttcatctgcagcgtccccggtcactgc 399 ||||||| |||||||||||| || |||||||||||||| Sbjct: 122151 cggcacccgctacttcatctgtggcttccccggtcactgc 122190
>gb|AY569612.1| Oryza sativa (japonica cultivar-group) blue copper-binding protein mRNA, complete cds Length = 800 Score = 40.1 bits (20), Expect = 7.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 360 cggcaccaactacttcatctgcagcgtccccggtcactgc 399 ||||||| |||||||||||| || |||||||||||||| Sbjct: 393 cggcacccgctacttcatctgtggcttccccggtcactgc 432
>dbj|AP005574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1595_D08 Length = 116351 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgc 399 ||||||||||||||| | ||||||| |||||| Sbjct: 30063 actacttcatctgcaccatccccggccactgc 30094
>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0676H02 Length = 144252 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgc 399 ||||||||||||||| | ||||||| |||||| Sbjct: 98053 actacttcatctgcaccatccccggccactgc 98084
>dbj|AK108807.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D03, full insert sequence Length = 1465 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 396 ctgccaggccggcatgaagatggccgtcaccg 427 ||||||||||||||||||| | ||| |||||| Sbjct: 405 ctgccaggccggcatgaaggtcgccatcaccg 436
>dbj|AK107999.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-135-G04, full insert sequence Length = 694 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 396 ctgccaggccggcatgaagatggccgtcaccg 427 ||||||||||||||||||| | ||| |||||| Sbjct: 376 ctgccaggccggcatgaaggtcgccatcaccg 407
>emb|CT025867.20| Mouse DNA sequence from clone RP24-318I24 on chromosome 17, complete sequence Length = 92816 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 76360 ttcacttcctctcctgcacc 76341
>gb|AC154616.2| Mus musculus BAC clone RP23-319O9 from 14, complete sequence Length = 179927 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ggctggccaaggggcaagcg 212 |||||||||||||||||||| Sbjct: 52578 ggctggccaaggggcaagcg 52597
>dbj|AK063784.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D10, full insert sequence Length = 850 Score = 40.1 bits (20), Expect = 7.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 360 cggcaccaactacttcatctgcagcgtccccggtcactgc 399 ||||||| |||||||||||| || |||||||||||||| Sbjct: 402 cggcacccgctacttcatctgtggcttccccggtcactgc 441
>dbj|AK059930.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B02, full insert sequence Length = 966 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 368 actacttcatctgcagcgtccccggtcactgc 399 ||||||||||||||| | ||||||| |||||| Sbjct: 408 actacttcatctgcaccatccccggccactgc 439
>gb|AF055904.1|AF055904 Myxococcus xanthus acetylornithine deacetylase (argE) gene, complete cds; and unknown gene Length = 2833 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 acgtggtggcggtgaacgcggcgg 286 |||||| ||||||||||||||||| Sbjct: 1441 acgtgggggcggtgaacgcggcgg 1464
>gb|AC104898.9| Mus musculus chromosome 8, clone RP23-300I4, complete sequence Length = 181370 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 cgagcatcagctagccatgg 73 |||||||||||||||||||| Sbjct: 126648 cgagcatcagctagccatgg 126629
>emb|AL954677.8| Zebrafish DNA sequence from clone DKEY-13J14 in linkage group 8, complete sequence Length = 186836 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cacttcctctcctgcacctc 33 |||||||||||||||||||| Sbjct: 160231 cacttcctctcctgcacctc 160212
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gcgaccgccgtgctggcgctggtc 117 |||||||||||| ||||||||||| Sbjct: 3282707 gcgaccgccgtggtggcgctggtc 3282730
>emb|CT009579.20| Mouse DNA sequence from clone CH29-133M20 on chromosome 17, complete sequence Length = 219682 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttcacttcctctcctgcacc 31 |||||||||||||||||||| Sbjct: 207257 ttcacttcctctcctgcacc 207238
>emb|AL671117.6| Mouse DNA sequence from clone RP23-278L4 on chromosome X, complete sequence Length = 209799 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tggtttactttccttccttc 476 |||||||||||||||||||| Sbjct: 89152 tggtttactttccttccttc 89171 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,287,680 Number of Sequences: 3902068 Number of extensions: 4287680 Number of successful extensions: 74938 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72356 Number of HSP's gapped (non-prelim): 2573 length of query: 535 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 512 effective length of database: 17,143,297,704 effective search space: 8777368424448 effective search space used: 8777368424448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)