ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags26p19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MARK3_HUMAN (P27448) MAP/microtubule affinity-regulating kinase ... 31 2.4
2IQGA3_HUMAN (Q86VI3) Ras GTPase-activating-like protein IQGAP3 30 5.4
3SON_MOUSE (Q9QX47) SON protein 30 7.1

>MARK3_HUMAN (P27448) MAP/microtubule affinity-regulating kinase 3 (EC 2.7.11.1)|
           (Cdc25C-associated protein kinase 1) (cTAK1) (C-TAK1)
           (Serine/threonine protein kinase p78) (Ser/Thr protein
           kinase PAR-1) (Protein kinase STK10)
          Length = 776

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 34  TRHPSPTLNYRQNQTHSQTLNRRQNLTQRPSPTLNRRRN 150
           TR P PT+N R  + H+   + RQ +T R S +  R RN
Sbjct: 3   TRTPLPTVNERDTENHTSHGDGRQEVTSRTSRSGARCRN 41



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>IQGA3_HUMAN (Q86VI3) Ras GTPase-activating-like protein IQGAP3|
          Length = 1631

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
 Frame = +1

Query: 40   HPSPTL--------NYRQNQTHSQTLNRRQNLTQRPSPTLNRRRNLTQH 162
            HP  TL        +  Q   H Q ++RRQ  T +    L R R+LT H
Sbjct: 1380 HPGDTLKEILSLSASREQEAAHKQLMSRRQACTAQTPEPLRRHRSLTAH 1428



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>SON_MOUSE (Q9QX47) SON protein|
          Length = 2404

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
 Frame = +1

Query: 10   SLNSRRNLTRHPS-----PTLNYRQNQTHSQTLNRRQNLTQRPSPTLNRRRNLTQHXXXX 174
            S+  RR+ +  PS     P+   R     S+T +RR     R S T +RRR         
Sbjct: 1927 SVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSAVRRR 1986

Query: 175  XXXXXXXXLNRCRSPIPSPRPAQSPLR 255
                    L R R+P+   R ++SP+R
Sbjct: 1987 SFSISPVRLRRSRTPL-RRRFSRSPIR 2012


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,670,828
Number of Sequences: 219361
Number of extensions: 1111526
Number of successful extensions: 2890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2870
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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