| Clone Name | bags26p18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 613 bits (309), Expect = e-172 Identities = 525/597 (87%) Strand = Plus / Plus Query: 19 cgtaatcggtcaagcattgacaggtcatccgcatcagtaacctcttctagttccagctct 78 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 170868 cgtaatcggtcaagcattgacaggtcatccgccgcagtaacctcttcttgttccggctct 170927 Query: 79 gctagttccggctcaggggtgaagtcggattcattgtcgctatctacttccatgttctgg 138 || ||||| ||| ||||||| |||||||||||||||||| |||||||| ||||| ||| Sbjct: 170928 tcttgttcctcctctggggtgatgtcggattcattgtcgctgtctacttcaatgttttgg 170987 Query: 139 ggtgaagcacggcggttcttgaaacatttcttggaaagacgtgtttcttggaagaattct 198 ||||||| | | |||||||||||| || |||||||||||||| ||||||||||||||| Sbjct: 170988 ggtgaagtatagtggttcttgaaacgctttttggaaagacgtgtctcttggaagaattct 171047 Query: 199 ccatcatatgtgtctgggttaatgtggggttcataatcctgttcatttgggagaggtggt 258 || ||||||||||||||||||||||| ||||||||||||| ||| |||||| ||| || Sbjct: 171048 ccttcatatgtgtctgggttaatgtgaggttcataatcctcttcctttgggggagaaagt 171107 Query: 259 ctaacacgtggcgacacttcataaacaacataccaaccttccagattctgatcagtttgg 318 ||| ||||||||| |||||||||||| |||| |||||||| |||||| ||| ||||||| Sbjct: 171108 ctagcacgtggcggcacttcataaacgacatcccaacctttcagatttggattagtttgg 171167 Query: 319 catgcccacagtagatagaaaacttgggtcgcctgttgagccgtaatatagacatcatga 378 || |||||| |||||||||| ||||||||||||||||||||| |||||||||||||| || Sbjct: 171168 caggcccacggtagatagaatacttgggtcgcctgttgagccataatatagacatcagga 171227 Query: 379 acatctaaatgggtgtttggattgatttcgactagtcctatatgttcatgagtccttcca 438 ||||||||||| ||| || | |||||||| ||||| |||| ||||||||||||||||| | Sbjct: 171228 acatctaaatgagtgctttggttgatttcaactagccctacatgttcatgagtccttcta 171287 Query: 439 gtctccttcggctggaaccaataacatttgaagactacgacgttcggtgggttttcacca 498 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 171288 gtctccttcggctgaaaccaataacatttgaagactacgacattcggtgggttttcacca 171347 Query: 499 tagaattgaagttcataaattgcttcaactcttccataatactcgataacaccttcgtcg 558 ||||| ||||||||||||||||||||||| | |||||||||||| || | ||||| || Sbjct: 171348 tagaacagaagttcataaattgcttcaactttcccataatactcggtacctccttcaccg 171407 Query: 559 gtagcagagacaccacaatttgtagatttccggtcgggcatagatagctctttgcca 615 ||||||| |||| | ||||||| || || ||||| ||| ||||||||||||||| Sbjct: 171408 atagcagatacacaaaaatttgttgactttcggtccaccatcgatagctctttgcca 171464
>gb|AY078063.2| Zea mays B transcriptional activator (b1) gene, b1-B' allele, exons 1 through 3 and partial cds Length = 107840 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 183 ttcttggaagaattctccatcatatgtgtctgggt 217 |||||||||||| ||||||||||||||||| |||| Sbjct: 15420 ttcttggaagaactctccatcatatgtgtccgggt 15386
>gb|AC165171.2| Zea mays clone CH201-145P10, complete sequence Length = 233369 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 183 ttcttggaagaattctccatcatatgtgtctgggt 217 |||||||||||| ||||||||||||||||| |||| Sbjct: 119033 ttcttggaagaactctccatcatatgtgtccgggt 118999 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 190 aagaattctccatcatatgtgtctgg 215 ||||| |||||||||||||||||||| Sbjct: 98474 aagaactctccatcatatgtgtctgg 98449
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence Length = 366120 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 183 ttcttggaagaattctccatcatatgtgtctgggt 217 |||||||||||| ||||||||||||||||| |||| Sbjct: 64768 ttcttggaagaactctccatcatatgtgtccgggt 64802
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 183 ttcttggaagaattctccatcatatgtgtctgggt 217 |||||||||||| |||| |||||||||||||||| Sbjct: 60451 ttcttggaagaactctctgtcatatgtgtctgggt 60417
>gb|AY618998.1| HIV-1 clone pCMO2.3 from Cameroon, complete genome Length = 9868 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 ctcttctagttccagctctgct 81 |||||||||||||||||||||| Sbjct: 3516 ctcttctagttccagctctgct 3495
>gb|AC022161.8| Homo sapiens chromosome 16 clone RP11-273P11, complete sequence Length = 181541 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 gtgggttttcaccatagaatt 505 ||||||||||||||||||||| Sbjct: 4164 gtgggttttcaccatagaatt 4184
>gb|AC079411.6| Homo sapiens chromosome 16 clone CTD-2050B12, complete sequence Length = 114356 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 gtgggttttcaccatagaatt 505 ||||||||||||||||||||| Sbjct: 66703 gtgggttttcaccatagaatt 66683
>gb|AF546188.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family from Zea mays, complete sequence Length = 203363 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 183 ttcttggaagaattctccatcatatgtgt 211 ||||| |||||| |||||||||||||||| Sbjct: 144512 ttcttagaagaactctccatcatatgtgt 144540
>gb|AY691650.1| Bacillus cereus cereulide peptide synthetase (cesB) gene, partial cds Length = 5190 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gcggttcttgaaacatttct 169 |||||||||||||||||||| Sbjct: 985 gcggttcttgaaacatttct 966
>gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, complete sequence Length = 162813 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 atatagacatcatgaacatc 383 |||||||||||||||||||| Sbjct: 29569 atatagacatcatgaacatc 29550
>ref|XM_511906.1| PREDICTED: Pan troglodytes similar to KIAA0612 protein (LOC455154), mRNA Length = 7102 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 6994 ccggctcaggggtgaagtcg 6975
>ref|NM_000250.1| Homo sapiens myeloperoxidase (MPO), nuclear gene encoding mitochondrial protein, mRNA Length = 3215 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 985 ccggctcaggggtgaagtcg 966
>gb|AC132602.2| Mus musculus BAC clone RP23-477C13 from chromosome 14, complete sequence Length = 194038 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tcatttgggagaggtggtct 260 |||||||||||||||||||| Sbjct: 47680 tcatttgggagaggtggtct 47699
>gb|DQ470915.1| Diatrype disciformis isolate AFTOL-ID 927 RNA polymerase II subunit 2 (RPB2) gene, partial sequence Length = 1327 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 atactcgataacaccttcgt 556 |||||||||||||||||||| Sbjct: 621 atactcgataacaccttcgt 602
>gb|AC138056.33| Medicago truncatula clone mth2-13i6, complete sequence Length = 157258 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttcataaattgcttcaactc 529 |||||||||||||||||||| Sbjct: 145506 ttcataaattgcttcaactc 145525
>gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's Hospital Oakland Research Institute) complete sequence Length = 143705 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ttcatttgggagaggtggtc 259 |||||||||||||||||||| Sbjct: 30438 ttcatttgggagaggtggtc 30457
>emb|AL591804.5| Human DNA sequence from clone RP11-457O1 on chromosome X, complete sequence Length = 112366 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tcttgaaacatttcttggaa 174 |||||||||||||||||||| Sbjct: 35274 tcttgaaacatttcttggaa 35255
>emb|X15377.1|HSMPOG Human gene for the light and heavy chains of myeloperoxidase Length = 14638 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 4367 ccggctcaggggtgaagtcg 4348
>gb|AC108519.4| Homo sapiens BAC clone RP11-1286E23 from 4, complete sequence Length = 172366 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 tgcttcaactcttccataat 538 |||||||||||||||||||| Sbjct: 107280 tgcttcaactcttccataat 107299
>gb|DQ360825.1| Bacillus cereus plasmid pBCE4810 hypothetical protein, CAAX amino terminal protease, and pXO-14-like conserved protein genes, complete cds; cereulide synthetase gene cluster, complete sequence; pXO-11-like hypothetical protein, reverse transcriptase, and pXO1-10-like hypothetical protein genes, complete cds; and pXO1-8-like hypothetical protein gene, partial cds Length = 35864 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gcggttcttgaaacatttct 169 |||||||||||||||||||| Sbjct: 20874 gcggttcttgaaacatttct 20855
>gb|AC007200.1| Homo sapiens chromosome 5 Bac clone CTB-54K3, complete sequence Length = 99670 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ctcttctagttccagctctg 79 |||||||||||||||||||| Sbjct: 50694 ctcttctagttccagctctg 50713
>gb|AC157786.7| Mus musculus chromosome 1, clone RP23-280O23, complete sequence Length = 205264 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 atatagacatcatgaacatc 383 |||||||||||||||||||| Sbjct: 93542 atatagacatcatgaacatc 93561
>gb|AC108172.1| Homo sapiens chromosome 5 clone RP11-171P23, complete sequence Length = 190619 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gttccagctctgctagttcc 87 |||||||||||||||||||| Sbjct: 44362 gttccagctctgctagttcc 44343
>gb|AC011059.8| Homo sapiens chromosome 18, clone RP11-11F23, complete sequence Length = 143799 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 cttctagttccagctctgct 81 |||||||||||||||||||| Sbjct: 92036 cttctagttccagctctgct 92017
>gb|S56200.1| myeloperoxidase [human, monocytic leukemia cell line SKM-1, mRNA Partial, 2238 nt] Length = 2238 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 808 ccggctcaggggtgaagtcg 789
>gb|AC034226.6| Homo sapiens chromosome 5 clone CTD-2130F23, complete sequence Length = 148046 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gttccagctctgctagttcc 87 |||||||||||||||||||| Sbjct: 93748 gttccagctctgctagttcc 93729
>gb|DQ088846.1| Homo sapiens myeloperoxidase (MPO) gene, complete cds Length = 15011 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 3850 ccggctcaggggtgaagtcg 3831
>dbj|AK038539.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230029L14 product:unclassifiable, full insert sequence Length = 2043 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tcatttgggagaggtggtct 260 |||||||||||||||||||| Sbjct: 1747 tcatttgggagaggtggtct 1728
>gb|AC140770.1| Homo sapiens chromosome 5 clone RP11-78J4, complete sequence Length = 156513 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ctcttctagttccagctctg 79 |||||||||||||||||||| Sbjct: 126582 ctcttctagttccagctctg 126563
>gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome Length = 641454 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 aattgaagttcataaattgc 521 |||||||||||||||||||| Sbjct: 69610 aattgaagttcataaattgc 69591
>emb|CT573000.9| Mouse DNA sequence from clone RP24-326F11 on chromosome 16, complete sequence Length = 172709 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 597 catagatagctctttgccaa 616 |||||||||||||||||||| Sbjct: 113743 catagatagctctttgccaa 113724
>gb|AC160563.2| Ornithorhynchus anatinus BAC clone OABb-456P24 from chromosome unknown, complete sequence Length = 152763 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ttctagttccagctctgcta 82 |||||||||||||||||||| Sbjct: 60498 ttctagttccagctctgcta 60517
>gb|AC004687.1|AC004687 Homo sapiens chromosome 17, clone hRPC.1171_I_10, complete sequence Length = 175120 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 134497 ccggctcaggggtgaagtcg 134478
>emb|CR974443.6| M.truncatula DNA sequence from clone MTH2-35O18 on chromosome 3, complete sequence Length = 115456 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 ttcataaattgcttcaactc 529 |||||||||||||||||||| Sbjct: 67480 ttcataaattgcttcaactc 67499
>gb|M17170.1|HUMMPO1 Human myeloperoxidase gene, exons 1 to 6 Length = 2384 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 2147 ccggctcaggggtgaagtcg 2128
>gb|J02694.1|HUMMYP Human myeloperoxidase mRNA, complete cds Length = 2568 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 956 ccggctcaggggtgaagtcg 937
>gb|M19507.1|HUMMPO Human myeloperoxidase mRNA, complete cds Length = 3215 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 985 ccggctcaggggtgaagtcg 966
>emb|Z71187.1|HSU115G11 Human DNA sequence from clone LL0XNC01-115G11 on chromosome X, complete sequence Length = 42503 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 tcttgaaacatttcttggaa 174 |||||||||||||||||||| Sbjct: 22912 tcttgaaacatttcttggaa 22931
>emb|X04876.1|HSMPOR Human mRNA for myeloperoxidase (EC 1.11.1.7) Length = 3213 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ccggctcaggggtgaagtcg 105 |||||||||||||||||||| Sbjct: 971 ccggctcaggggtgaagtcg 952
>emb|AL672004.12| Mouse DNA sequence from clone RP23-200C21 on chromosome 11, complete sequence Length = 101730 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 512 cataaattgcttcaactctt 531 |||||||||||||||||||| Sbjct: 8815 cataaattgcttcaactctt 8834 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,035,729 Number of Sequences: 3902068 Number of extensions: 5035729 Number of successful extensions: 102644 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102559 Number of HSP's gapped (non-prelim): 85 length of query: 616 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 593 effective length of database: 17,143,297,704 effective search space: 10165975538472 effective search space used: 10165975538472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)