>UHRF2_MOUSE (Q7TMI3) Ubiquitin-like PHD and RING finger domain-containing|
           protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD
           and RING finger domains protein 2) (Np95-like ring
           finger protein) (Nuclear zinc finger protein Np97)
           (NIRF)
          Length = 803

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 129 CDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVE--WLCSDCIPKHSEAIKS 293
           C +CG+    ++ L C  C N A H YCL      +  E  W C  C    SE +K+
Sbjct: 348 CHKCGEKRDPNMQLLCDEC-NMAYHIYCLSPPLDKVPEEEYWYCPSCKTDSSEVVKA 403

>ATXR5_ARATH (Q8VZJ1) Histone-lysine N-methyltransferase ATXR5 (EC 2.1.1.43)|
           (Trithorax-related protein 5) (TRX-related protein 5)
           (Protein SET DOMAIN GROUP 15)
          Length = 352

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 75  PLVREAEDLRRRREMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWL 251
           P+V + E+       +  C++CG       LL C  C+    H  CL  I   + +  WL
Sbjct: 49  PVVEQEEEEDEDSYSNVTCEKCGSGEGDDELLLCDKCDRGF-HMKCLRPIVVRVPIGTWL 107

Query: 252 CSDC 263
           C DC
Sbjct: 108 CVDC 111

>EGFR_DROME (P04412) Epidermal growth factor receptor precursor (EC 2.7.10.1)|
           (Egfr) (Gurken receptor) (Protein torpedo) (Drosophila
           relative of ERBB)
          Length = 1426

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 111 REMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCIPKHSE--A 284
           R+   +C+ C + GY   +  CS C +  R   C  E   D   +    +C  +H E   
Sbjct: 738 RKCHPLCELCTNYGYHEQV--CSKCTHYKRREQCETECPADHYTDEEQRECFQRHPECNG 795

Query: 285 IKSPGETNCQRQLRNTQLSFFVVNE 359
              PG  +C +  RN +L  F  NE
Sbjct: 796 CTGPGADDC-KSCRNFKL--FDANE 817

>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
            (ALL1-related protein)
          Length = 5262

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 126  VCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWLCSDCIPKHSEAIKSPG 299
            VC+ CG       LL C +C + + H YCLD     +    W C  C+        SPG
Sbjct: 1154 VCEVCGQASDPSRLLLCDDC-DISYHTYCLDPPLLTVPKGGWKCKWCVSCMQCGAASPG 1211

>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)|
           (Protein GYMNOS)
          Length = 1384

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 72  DPLVREAEDLRRRREMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVE-W 248
           D    + E + R    ++ C  CG+   S  L+ C+ C  A  H  CL     D +VE W
Sbjct: 33  DRTFEQVEAIVRTDAKENACQACGE---STNLVSCNTCTYAF-HAKCLVPPLKDASVENW 88

Query: 249 LCSDCIPKHSEAIK 290
            C +C+   +E  K
Sbjct: 89  RCPECVSPLNEIDK 102

>ATXR6_ARATH (Q9FNE9) Histone-lysine N-methyltransferase ATXR6 (EC 2.1.1.43)|
           (Trithorax-related protein 6) (TRX-related protein 6)
           (Protein SET DOMAIN GROUP 34)
          Length = 349

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = +3

Query: 114 EMDDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWLCSDC----IPKHS 278
           + D VC+EC        LL C  C+    H +CL  I   +    W C  C    IPK  
Sbjct: 30  DWDTVCEECSSGKQPAKLLLCDKCDKGF-HLFCLRPILVSVPKGSWFCPSCSKHQIPKSF 88

Query: 279 EAIKS 293
             I++
Sbjct: 89  PLIQT 93

>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding|
           protein 19)
          Length = 1895

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +3

Query: 378 KATKAQGLYRSRLCRKREETLDSGEH---VPSGDTSNRGRCVEETLDSCEIFVSDIPNHI 548
           K  K   ++      KR  T+D G +   V +GD  N  + V++  +  E + + +    
Sbjct: 275 KGAKGSKMFCKACITKRPLTIDGGGNMGGVTTGDALNYLKAVKDKFEDSEKYDTFLEVLN 334

Query: 549 DCKKEGEDING 581
           DCK +G D +G
Sbjct: 335 DCKHQGVDTSG 345

>PRH_PETCR (P48786) Pathogenesis-related homeodomain protein (PRHP)|
          Length = 1088

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
 Frame = +3

Query: 96  DLRRRREMDDV-CDECG--DVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCI 266
           D R   + +D+ C +CG  DV  S+ ++ C    +   H++CLD          L  + I
Sbjct: 569 DSRGEIDSEDIFCAKCGSKDVTLSNDIILCDGACDRGFHQFCLDPP--------LLKEYI 620

Query: 267 PKHSEAIKSPG---ETNCQRQLRNTQLSFFVVN---EPNVEHEKATKAQGLYRSRLCRKR 428
           P   E    PG   + +C + L ++Q +  ++    E     E A  A G          
Sbjct: 621 PPDDEGWLCPGCECKIDCIKLLNDSQETNILLGDSWEKVFAEEAAAAASG---------- 670

Query: 429 EETLDSGEHVPSGDTSN 479
            + LD    +PS D+ +
Sbjct: 671 -KNLDDNSGLPSDDSED 686

>LIN49_CAEEL (Q20318) Protein lin-49 (Abnormal cell lineage protein 49)|
          Length = 1042

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
 Frame = +3

Query: 114 EMDDVCDEC--GDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAVEWLCSDCIPKHSEAI 287
           E+DDVC+ C  GD    + ++ C  CN +  H+ C         + ++   C+      I
Sbjct: 193 ELDDVCNICLDGDTSNCNQIVYCDRCNLSV-HQDC-------YGIPFIPEGCLECRRCGI 244

Query: 288 KSPGETNC 311
              G  NC
Sbjct: 245 SPAGRVNC 252

>EME1_CANGA (Q6FM02) Crossover junction endonuclease EME1 (EC 3.1.22.-)|
          Length = 580

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
 Frame = +3

Query: 192 AARHRYCLDEINFD---LAVEWLCSDCIPKHSEAIKSPGETNCQRQLRNTQLSFFVVNEP 362
           A++ +  LDEI  D   ++ +    D IPK +       + N      ++Q    + + P
Sbjct: 76  ASQRKRILDEILSDDLSISTDDFSLDAIPKQTSGRTRDSQKNDSALYESSQEKASIASSP 135

Query: 363 NVEHEKATKAQGLYRSRLCRKREETLDSGEHVPSGDTSNRGRCVEETLDSCEIFVSDIPN 542
           N   +K++  +         K+ +++DS +      T      V E++ +  +F  +  N
Sbjct: 136 NRLIKKSSSER--------HKKSQSIDSKDICIKSPTRKINLGVTESMQTDVLFEDNNFN 187

Query: 543 HIDCKKE 563
           +I+C +E
Sbjct: 188 NIECTQE 194

>TENA_CHICK (P10039) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)|
           (Neuronectin) (GMEM) (JI) (Miotendinous antigen)
           (Glioma-associated-extracellular matrix antigen) (GP
           150-225)
          Length = 1808

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = +3

Query: 441 DSGEHVPSGDTSNRGRCVEETLDSCEIFVSD------IPNHIDCKKEGEDING 581
           D GE     D  NRGRCV    +  E F+ +       PN  DC   G  +NG
Sbjct: 434 DCGELRCPNDCHNRGRCVNGQCECHEGFIGEDCGELRCPN--DCNSHGRCVNG 484

>YAJ8_SCHPO (Q09908) Hypothetical protein C30D11.08c in chromosome I|
          Length = 538

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
 Frame = +3

Query: 174 CSNCNNA----ARHRYCLDEINFDLAVEWLCSDCIPKHSEAIKSPGETNCQRQLRNTQLS 341
           C  CN          Y  DE+      EW C DCI +  +A    G T  +  L + +  
Sbjct: 252 CDGCNTPFHQLCHEPYISDELLDSPNGEWFCDDCIRRKKQAPLVTGTTARELNLSSEEKK 311

Query: 342 FFVVNEP 362
            ++++ P
Sbjct: 312 SYLLSLP 318

>BAZ1A_XENLA (Q8UVR5) Bromodomain adjacent to zinc finger domain 1A|
           (ATP-utilizing chromatin assembly and remodely factor 1)
           (xACF1) (Fragment)
          Length = 627

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 129 CDECGDVGYSHLLLRCSNCNNAARHRYCL-DEINFDLAVEWLCSDCIPK 272
           C  C   G    ++ C  C+    H YC+  ++ +    +W C +C PK
Sbjct: 225 CKVCRKKGDGESMVLCDGCDRG-HHIYCVRPKLKYVPEGDWFCPECHPK 272

>TIF1A_MOUSE (Q64127) Transcription intermediary factor 1-alpha (TIF1-alpha)|
           (Tripartite motif protein 24)
          Length = 1051

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 174 CSNC-NNAARHRYCLDEINFDLAVEWLCSDCIPKHSEAIKSPGETNCQRQ 320
           C++C +NA  + +C++       VEWLC  CI  H     +   T  Q++
Sbjct: 163 CTSCEDNAEANGFCVE------CVEWLCKTCIRAHQRVKFTKDHTVRQKE 206

>TIF1A_HUMAN (O15164) Transcription intermediary factor 1-alpha (TIF1-alpha)|
           (Tripartite motif protein 24) (RING finger protein 82)
          Length = 1050

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 174 CSNC-NNAARHRYCLDEINFDLAVEWLCSDCIPKHSEAIKSPGETNCQRQ 320
           C++C +NA  + +C++       VEWLC  CI  H     +   T  Q++
Sbjct: 163 CTSCEDNAEANGFCVE------CVEWLCKTCIRAHQRVKFTKDHTVRQKE 206

>RPC2_YEAST (P22276) DNA-directed RNA polymerase III 130 kDa polypeptide (EC|
            2.7.7.6) (C128) (RNA polymerase III subunit 2)
          Length = 1149

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 123  DVCDECGDVGYSHLLLRCSNCNN 191
            DVCD+CG +GYS     C +  N
Sbjct: 1093 DVCDKCGLMGYSGWCTTCKSAEN 1115

>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43)
          Length = 4903

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 126  VCDECGDVGYSHLLLRCSNCNNAARHRYCLD-EINFDLAVEWLCSDCI 266
            VC+ CG       LL C +C + + H YCLD  +       W C  C+
Sbjct: 1002 VCEACGKATDPGRLLLCDDC-DISYHTYCLDPPLQTVPKGGWKCKWCV 1048

>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 126  VCDECGDVGYSHLLLRCSNCNNAARHRYCLD-EINFDLAVEWLCSDCI 266
            VC+ CG       LL C +C + + H YCLD  +       W C  C+
Sbjct: 1009 VCEACGKATDPGRLLLCDDC-DISYHTYCLDPPLQTVPKGGWKCKWCV 1055

>CHD3_DROME (O16102) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)|
           (ATP-dependent helicase Chd3)
          Length = 892

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 120 DDVCDECGDVGYSHLLLRCSNCNNAARHRYCLDEINFDLAV-EWLCSDCIPKHSEAIK 290
           ++ C  C D G    LL C +C +   HR CL      +   +W+C  CIP   +A K
Sbjct: 35  EEYCKVCSDGGD---LLCCDSCPSVY-HRTCLSPPLKSIPKGDWICPRCIPLPGKAEK 88

>MFD_BORBU (O51568) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)|
           (ATP-dependent helicase mfd)
          Length = 1125

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 352 LMNQMWSTRRQQRHKDYIEVDYAEKEKRH*ILVNMSRVVTHRIGDD 489
           +  Q+   +     KDYIE++YAE EK   I +  + ++   IG D
Sbjct: 474 IFRQIKRIKTSSLEKDYIEIEYAEGEKLF-IPIEQTNLIQKYIGSD 518

>NOTC1_BRARE (P46530) Neurogenic locus notch homolog protein 1 precursor|
          Length = 2437

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 360  PNVEHEKATKAQGLYRSRLCRKREETLDSGE-HVPSGDTSNRGRCVEETLDSCE 518
            P+V  E A + QG+  + LCR   + +D+G  H+        G   +E +D C+
Sbjct: 1095 PSVSCEVAARQQGVSVAVLCRHAGQCVDAGNTHLCRCQAGYTGSYCQEQVDECQ 1148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,026,397
Number of Sequences: 219361
Number of extensions: 1520905
Number of successful extensions: 4360
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4359
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)