>ref|NM_001024889.1| Rattus norvegicus reproductive homeobox on X chromosome 4
           (LOC313451), mRNA
          Length = 829

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 23  ctccttccccatctgctgctgc 44
           ||||||||||||||||||||||
Sbjct: 175 ctccttccccatctgctgctgc 154

>gb|DQ058652.1| Rattus norvegicus reproductive homeobox on X chromosome 4 mRNA,
           complete cds
          Length = 829

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 23  ctccttccccatctgctgctgc 44
           ||||||||||||||||||||||
Sbjct: 175 ctccttccccatctgctgctgc 154

>gb|AC140294.3| Mus musculus BAC clone RP23-359G16 from chromosome 19, complete sequence
          Length = 190551

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 555    aagaaggaaggggaggatata 575
              |||||||||||||||||||||
Sbjct: 135697 aagaaggaaggggaggatata 135677

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 506      agattcatgtgaaatctttgt 526
                |||||||||||||||||||||
Sbjct: 19194046 agattcatgtgaaatctttgt 19194026

>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 506    agattcatgtgaaatctttgt 526
              |||||||||||||||||||||
Sbjct: 127568 agattcatgtgaaatctttgt 127548

>ref|NM_129417.1| Arabidopsis thaliana acid phosphatase AT2G38600 mRNA, complete cds
          Length = 756

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tgagataaactttgatttgg 237
           ||||||||||||||||||||
Sbjct: 265 tgagataaactttgatttgg 246

>ref|XM_587937.2| PREDICTED: Bos taurus similar to Protein C14orf114 (LOC539532),
           mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 161 ccttctgctgcgctgcagcaactg 184
           ||||||||| ||||||||||||||
Sbjct: 687 ccttctgcttcgctgcagcaactg 710

>gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, complete sequence
          Length = 172683

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    gctgcagcaactgcaacaac 191
              ||||||||||||||||||||
Sbjct: 160048 gctgcagcaactgcaacaac 160029

>ref|XM_547872.2| PREDICTED: Canis familiaris similar to Protein C14orf114,
           transcript variant 1 (LOC490750), mRNA
          Length = 1986

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 161 ccttctgctgcgctgcagcaactg 184
           ||||||||| ||||||||||||||
Sbjct: 672 ccttctgcttcgctgcagcaactg 695

>ref|XM_861916.1| PREDICTED: Canis familiaris similar to Protein C14orf114,
           transcript variant 2 (LOC490750), mRNA
          Length = 1683

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 161 ccttctgctgcgctgcagcaactg 184
           ||||||||| ||||||||||||||
Sbjct: 291 ccttctgcttcgctgcagcaactg 314

>gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complete sequence
          Length = 116557

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 554    taagaaggaaggggaggata 573
              ||||||||||||||||||||
Sbjct: 105192 taagaaggaaggggaggata 105211

>emb|AL161742.7| Human DNA sequence from clone RP4-597J3 on chromosome 1p32.1-32.3
             Contains the 5' end of the ROR1 gene for receptor tyrosine
             kinase-like orphan receptor 1, a ribosomal protein L19
             (RPL19) pseudogene, a cofilin 1 (non-muscle) (CFL1)
             pseudogene and a CpG island, complete sequence
          Length = 114409

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   tggagtggttgtgtagtgat 260
             ||||||||||||||||||||
Sbjct: 71949 tggagtggttgtgtagtgat 71968

>gb|AC005499.3| Arabidopsis thaliana chromosome 2 clone T6A23 map ve018, complete
             sequence
          Length = 107541

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tgagataaactttgatttgg 237
             ||||||||||||||||||||
Sbjct: 70969 tgagataaactttgatttgg 70988

>gb|AC097469.2| Homo sapiens BAC clone RP11-55N4 from 4, complete sequence
          Length = 191883

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 305  aaattgtcaaaggcaactaa 324
            ||||||||||||||||||||
Sbjct: 6159 aaattgtcaaaggcaactaa 6178

>gb|AC022096.7| Homo sapiens chromosome 5 clone CTB-43D14, complete sequence
          Length = 170624

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   gctctctccttccccatctg 37
            ||||||||||||||||||||
Sbjct: 3542 gctctctccttccccatctg 3561

>gb|AY609905.1| Sus scrofa clone Clu_41847.scr.msk.p1.Contig1, mRNA sequence
          Length = 1303

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 46  tcgtctggtggtgctgg-gtttgggatg 72
           ||||||||||||||||| ||||||||||
Sbjct: 122 tcgtctggtggtgctggtgtttgggatg 149

>gb|AC110196.9| Mus musculus chromosome 15, clone RP24-343E7, complete sequence
          Length = 154367

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   gctgcagcaactgcaacaac 191
             ||||||||||||||||||||
Sbjct: 96941 gctgcagcaactgcaacaac 96922

>gb|AC008659.5| Homo sapiens chromosome 5 clone CTB-26E19, complete sequence
          Length = 184981

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     gctctctccttccccatctg 37
              ||||||||||||||||||||
Sbjct: 162177 gctctctccttccccatctg 162196


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,630,684
Number of Sequences: 3902068
Number of extensions: 5630684
Number of successful extensions: 113719
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 113657
Number of HSP's gapped (non-prelim): 63
length of query: 585
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 562
effective length of database: 17,143,297,704
effective search space: 9634533309648
effective search space used: 9634533309648
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)