ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags27d15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA sequence Length = 936 Score = 214 bits (108), Expect = 1e-52 Identities = 152/166 (91%), Gaps = 7/166 (4%) Strand = Plus / Minus Query: 104 cccactatgggggctcaccaactccctcgcatgggtcaggaggaggctacngggccgaca 163 |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 767 cccactatgggggctcaccaactcccacgcatgggtcaggaggaggctacaat-ccgaca 709 Query: 164 ccgacaccaacttacggtactacaccaacgccgacgccatcttacggcactacaccgacg 223 ||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 708 ccgacaccaacttacggcactacacc------gacgccatcttacggcactacaccgacg 655 Query: 224 ccatcttatggcactacaccgacgccatcttacggcactacaccga 269 ||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 654 ccaacttacggcactacaccgacgccatcttacggcactacaccga 609 Score = 200 bits (101), Expect = 2e-48 Identities = 114/119 (95%) Strand = Plus / Minus Query: 194 ccgacgccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatct 253 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 660 ccgacgccaacttacggcactacaccgacgccatcttacggcactacaccgacgccatct 601 Query: 254 tacggcactacaccgagcaccccaagtacaccttnccatgaagnccctgcaagtccaaa 312 |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| Sbjct: 600 tacggcactacaccgagcaccccaagtacaccttcccatgatgtccctgcaagtccaaa 542 Score = 149 bits (75), Expect = 6e-33 Identities = 84/87 (96%) Strand = Plus / Minus Query: 1 aaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcaggagc 60 |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 852 aaggttcttctgatcagtgccgtcttggtggggcttgtttcactgagctcgtgcaggagc 793 Query: 61 ctgggagagttgcatgagcagaagacc 87 ||||||||||||||||||||||||||| Sbjct: 792 ctgggagagttgcatgagcagaagacc 766
>ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA Length = 660 Score = 113 bits (57), Expect = 3e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 1 aaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcaggagc 60 |||||||||||||| |||| |||| |||||||||| |||| |||||||| ||||||||| Sbjct: 10 aaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcaggagc 69 Query: 61 ctgggagagttgcatgagcagaagacctactcttcttctac 101 |||||||||||| ||| |||||||||||||||||| |||| Sbjct: 70 ctgggagagttgtctgaacagaagacctactcttctactac 110 Score = 93.7 bits (47), Expect = 3e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 200 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 259 |||||||| ||||||||||| || |||||||| ||||||||||| || |||||||||||| Sbjct: 205 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 264 Query: 260 actacaccgagcaccccaagtacacct 286 || ||||| |||||||| || |||||| Sbjct: 265 acgacaccaagcacccccagcacacct 291 Score = 93.7 bits (47), Expect = 3e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 185 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 244 |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| Sbjct: 166 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 225 Query: 245 acgccatcttacggcactacacc 267 || |||||||||||||||||||| Sbjct: 226 acaccatcttacggcactacacc 248 Score = 40.1 bits (20), Expect = 4.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 161 acaccgacaccaacttacggtactacaccaac 192 ||||| |||||| ||||||| ||||||||||| Sbjct: 220 acaccaacaccatcttacggcactacaccaac 251
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 113 bits (57), Expect = 3e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 1 aaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcaggagc 60 |||||||||||||| |||| |||| |||||||||| |||| |||||||| ||||||||| Sbjct: 7324199 aaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcaggagc 7324140 Query: 61 ctgggagagttgcatgagcagaagacctactcttcttctac 101 |||||||||||| ||| |||||||||||||||||| |||| Sbjct: 7324139 ctgggagagttgtctgaacagaagacctactcttctactac 7324099 Score = 93.7 bits (47), Expect = 3e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 185 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 244 |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| Sbjct: 7323735 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 7323676 Query: 245 acgccatcttacggcactacacc 267 || |||||||||||||||||||| Sbjct: 7323675 acaccatcttacggcactacacc 7323653 Score = 93.7 bits (47), Expect = 3e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 200 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 259 |||||||| ||||||||||| || |||||||| ||||||||||| || |||||||||||| Sbjct: 7323696 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 7323637 Query: 260 actacaccgagcaccccaagtacacct 286 || ||||| |||||||| || |||||| Sbjct: 7323636 acgacaccaagcacccccagcacacct 7323610 Score = 40.1 bits (20), Expect = 4.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 161 acaccgacaccaacttacggtactacaccaac 192 ||||| |||||| ||||||| ||||||||||| Sbjct: 7323681 acaccaacaccatcttacggcactacaccaac 7323650
>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich protein mRNA, complete cds Length = 902 Score = 113 bits (57), Expect = 3e-22 Identities = 90/101 (89%) Strand = Plus / Plus Query: 1 aaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcaggagc 60 |||||||||||||| |||| |||| |||||||||| |||| |||||||| ||||||||| Sbjct: 74 aaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcaggagc 133 Query: 61 ctgggagagttgcatgagcagaagacctactcttcttctac 101 |||||||||||| ||| |||||||||||||||||| |||| Sbjct: 134 ctgggagagttgtctgaacagaagacctactcttctactac 174 Score = 93.7 bits (47), Expect = 3e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 185 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 244 |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| Sbjct: 230 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 289 Query: 245 acgccatcttacggcactacacc 267 || |||||||||||||||||||| Sbjct: 290 acaccatcttacggcactacacc 312 Score = 85.7 bits (43), Expect = 8e-14 Identities = 76/87 (87%) Strand = Plus / Plus Query: 200 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 259 |||||||| ||||||||||| || |||||||| ||||||||||| || |||||||||||| Sbjct: 269 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 328 Query: 260 actacaccgagcaccccaagtacacct 286 || ||||| ||| |||| || |||||| Sbjct: 329 acgacaccaagctcccccagcacacct 355 Score = 40.1 bits (20), Expect = 4.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 161 acaccgacaccaacttacggtactacaccaac 192 ||||| |||||| ||||||| ||||||||||| Sbjct: 284 acaccaacaccatcttacggcactacaccaac 315
>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08 Length = 136267 Score = 113 bits (57), Expect = 3e-22 Identities = 90/101 (89%) Strand = Plus / Minus Query: 1 aaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcaggagc 60 |||||||||||||| |||| |||| |||||||||| |||| |||||||| ||||||||| Sbjct: 100007 aaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcaggagc 99948 Query: 61 ctgggagagttgcatgagcagaagacctactcttcttctac 101 |||||||||||| ||| |||||||||||||||||| |||| Sbjct: 99947 ctgggagagttgtctgaacagaagacctactcttctactac 99907 Score = 93.7 bits (47), Expect = 3e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 185 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 244 |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| Sbjct: 99543 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 99484 Query: 245 acgccatcttacggcactacacc 267 || |||||||||||||||||||| Sbjct: 99483 acaccatcttacggcactacacc 99461 Score = 93.7 bits (47), Expect = 3e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 200 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 259 |||||||| ||||||||||| || |||||||| ||||||||||| || |||||||||||| Sbjct: 99504 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 99445 Query: 260 actacaccgagcaccccaagtacacct 286 || ||||| |||||||| || |||||| Sbjct: 99444 acgacaccaagcacccccagcacacct 99418 Score = 40.1 bits (20), Expect = 4.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 161 acaccgacaccaacttacggtactacaccaac 192 ||||| |||||| ||||||| ||||||||||| Sbjct: 99489 acaccaacaccatcttacggcactacaccaac 99458
>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG) mRNA, complete cds Length = 1704 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 cgagcaccccaagtacacctt 287 ||||||||||||||||||||| Sbjct: 675 cgagcaccccaagtacacctt 695
>gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, complete sequence Length = 43128 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctcctgcaggagcctgggag 67 |||||||||||||||||||| Sbjct: 42852 ctcctgcaggagcctgggag 42833
>gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, complete sequence Length = 5054 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctcctgcaggagcctgggag 67 |||||||||||||||||||| Sbjct: 1337 ctcctgcaggagcctgggag 1318
>emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JG2R Length = 788 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 ctcctgcaggagcctgggag 67 |||||||||||||||||||| Sbjct: 467 ctcctgcaggagcctgggag 448 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,812,379 Number of Sequences: 3902068 Number of extensions: 1812379 Number of successful extensions: 31882 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31831 Number of HSP's gapped (non-prelim): 35 length of query: 312 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 290 effective length of database: 17,147,199,772 effective search space: 4972687933880 effective search space used: 4972687933880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
