ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags27d12 |
|---|---|
| Clone Library Name | barley_pub |
>RIHA_SALTI (Q8Z8H0) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 53.5 bits (127), Expect = 4e-07 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Frame = +1 Query: 4 HQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLAAVDPS 180 H+ + D ++ + + ++++L +++YH D + G LHDP T+ + P Sbjct: 193 HKAQIHAADIERFRDIGNPISTIVAELLDFFFEYHKDEKWGFVGAPLHDPCTIAWLLKPE 252 Query: 181 LMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVVELIMQ 357 + T E V V+T G T+G+TV D Y +T KP V V VD V+L+ + Sbjct: 253 IFTTVERWVGVETQGKYTQGMTVVD-----YYFLTG--NKPNATVMVDVDRQGFVDLLAE 305 Query: 358 RL 363 RL Sbjct: 306 RL 307
>RIHA_SALCH (Q57RR6) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 311 Score = 50.1 bits (118), Expect = 5e-06 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Frame = +1 Query: 4 HQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLAAVDPS 180 H+ + D ++ + + ++++L +++YH D + G LH P T+ + P Sbjct: 193 HKAQIHAADIERFRDIGNPISTIVAELLDFFFEYHKDEKWGFVGAPLHAPCTIAWLLKPE 252 Query: 181 LMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDAPAVVELIMQ 357 + T E V V+T G T+G+TV D Y +T KP V V VD V+L+ + Sbjct: 253 IFTTVERWVGVETKGKYTQGMTVVD-----YYFLTG--NKPNATVMVDVDRQGFVDLLAE 305 Query: 358 RL 363 RL Sbjct: 306 RL 307
>IUNH_LEIMA (P83851) Inosine-uridine preferring nucleoside hydrolase (EC| 3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine nucleosidase) (Nonspecific nucleoside hydrolase) Length = 313 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Frame = +1 Query: 4 HQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLAAVDPSL 183 HQ + + +K++ + +K A ++ +IL Y + + T G +HDP + +DP++ Sbjct: 194 HQALATPAVQKRVREVGTKPAAFMLQILDFYTKVYEKEHDTYGK-VHDPCAVAYVIDPTV 252 Query: 184 MTYTEGVVRVQTDG-ITKGLTVFD 252 MT V ++ +G +T G+TV D Sbjct: 253 MTTERVPVDIELNGALTTGMTVVD 276
>RIHA_SHEON (Q8EIM7) Pyrimidine-specific ribonucleoside hydrolase rihA (EC| 3.2.-.-) (Cytidine/uridine-specific hydrolase) Length = 318 Score = 42.4 bits (98), Expect = 0.001 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Frame = +1 Query: 4 HQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMD-AYSTTGVYLHDPTTLLAAVDPS 180 HQ + D D +++ + A+ ++++L + YH D + G LHDP T+ + P Sbjct: 193 HQAQIMDEDIERIRAIPNPVAKCVAELLDFFMIYHRDPKWGFVGAPLHDPCTIAWLLKPE 252 Query: 181 LMTYTEGVVRVQTDG-ITKGLTVFDNTKKTYGEITEWCGKP-TVKVAVTVDAPAVVELIM 354 L + V ++T +T G+TV D + T GKP V ++ V+L++ Sbjct: 253 LFDAQDCWVGIETQSELTLGMTVVDRYQLT--------GKPANATVLFGLNRQGFVDLLV 304 Query: 355 QRL 363 L Sbjct: 305 HSL 307
>IUNH_CRIFA (Q27546) Inosine-uridine preferring nucleoside hydrolase (EC| 3.2.2.1) (IU-nucleoside hydrolase) (IU-NH) (Purine nucleosidase) (Nonspecific nucleoside hydrolase) Length = 314 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +1 Query: 4 HQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLAAVDPSL 183 HQ + + +++++ D+ AR++ +I+ Y + +HDP + +DPS+ Sbjct: 194 HQALATPPILQRVKEVDTNPARFMLEIMDYYTKIYQSNRYMAAAAVHDPCAVAYVIDPSV 253 Query: 184 MTYTEGVVRVQTDG-ITKGLTVFD 252 MT V ++ G +T G+TV D Sbjct: 254 MTTERVPVDIELTGKLTLGMTVAD 277
>YD62_SCHPO (Q10314) Hypothetical protein C17G8.02 in chromosome I| Length = 330 Score = 36.2 bits (82), Expect = 0.074 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = +1 Query: 4 HQVILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYST-TGVYLHDPTTLLAAVDPS 180 H+V+L + L Q + ++ L +++ ++ + + Y GV +HD + A+ PS Sbjct: 210 HKVLLDANIIQLLRQHSNPFSSTLVELMTVFQQTYENVYGIRNGVPVHDVCAVALALWPS 269 Query: 181 LMTYTEGVVRVQTDGITKGLTVFD 252 L T V V D +T G TV D Sbjct: 270 LWTSRSMYVTVSLDSLTLGRTVCD 293
>RIHC_SALPA (Q5PKI2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 79 KILGLYYDYHMDAYSTTGVYLHDPTTLLAAVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 252 K+L ++++ TGV +HD + V P L T V V+T G T G TV D Sbjct: 214 KMLHSLFNHYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGEYTAGTTVVD 272
>RIHC_SALTY (Q8ZRY7) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 79 KILGLYYDYHMDAYSTTGVYLHDPTTLLAAVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 252 K+L ++++ TGV +HD + V P L T V V+T G T G TV D Sbjct: 214 KMLHSLFNHYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGQYTAGTTVVD 272
>RIHC_SALTI (Q8Z9M9) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 79 KILGLYYDYHMDAYSTTGVYLHDPTTLLAAVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 252 K+L ++++ TGV +HD + V P L T V V+T G T G TV D Sbjct: 214 KMLHSLFNHYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGEYTAGTTVVD 272
>RIHC_SALCH (Q57TL0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 306 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 79 KILGLYYDYHMDAYSTTGVYLHDPTTLLAAVDPSLMTYTEGVVRVQTDG-ITKGLTVFD 252 K+L ++++ TGV +HD + V P L T V V+T G T G TV D Sbjct: 214 KMLHSLFNHYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGEYTAGTTVVD 272
>OXAA_HELPJ (Q9ZJG8) Inner membrane protein oxaA| Length = 549 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = +1 Query: 10 VILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLAAVDPSLMT 189 V+L + D KK+E+ + K A+ + + + +D Y TT ++ DP A +D + T Sbjct: 233 VLLENTD-KKIEKIEDKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALIDSEIGT 291
>RIBD_CHLPN (Q9Z735) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 376 Score = 29.3 bits (64), Expect = 9.1 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = +1 Query: 160 LAAVDPSLMTYTEGVVRVQTDG---ITKGLTVFDNTKKTYGEITEWCGKPTVKVAVTVDA 330 L A P M Y + +RV D + VFD T T TE C + +KV ++D Sbjct: 209 LTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDKTSPTLYVTTERCPENYIKVLDSLDV 268 Query: 331 PAVV 342 P ++ Sbjct: 269 PVLL 272
>OXAA_HELPY (O25989) Inner membrane protein oxaA| Length = 547 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/60 (28%), Positives = 31/60 (51%) Frame = +1 Query: 10 VILSDVDRKKLEQSDSKYARYLSKILGLYYDYHMDAYSTTGVYLHDPTTLLAAVDPSLMT 189 V+L + D KK+E+ + K A+ + + + +D Y TT ++ DP A +D + T Sbjct: 230 VLLENSD-KKIEKIEDKDAKEIKRFSNTLFLSSVDRYFTTLLFTKDPQGFEALIDSEIGT 288 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,846,009 Number of Sequences: 219361 Number of extensions: 1759865 Number of successful extensions: 4658 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4526 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4657 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
