ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags26o06 |
|---|---|
| Clone Library Name | barley_pub |
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 125 bits (315), Expect = 6e-29 Identities = 72/185 (38%), Positives = 97/185 (52%), Gaps = 16/185 (8%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y S K AK++TD T S+GYGFV+F D +Q A+ EM G C RP+R+G A + Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269 Query: 183 GVQERVPIPNTN---------TQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 V V + + Q D N+T+FVGGL V+E+ LK +F +GE+ Sbjct: 270 HVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEI 329 Query: 336 VHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS-------NKQTQ 494 V+VKIP GK CGFVQ+ NR SAE +RLSWGR+ + N Q+Q Sbjct: 330 VYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAPALNYQSQ 389 Query: 495 PQEAT 509 + T Sbjct: 390 VSQTT 394 Score = 36.6 bits (83), Expect = 0.051 Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG-MPCSSRPMRIGPAANRKTTGVQERV 200 K++ ++ T + GY FV+F P E + AM+ N +P ++ ++ A+ G++E+ Sbjct: 123 KLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWASGG---GLREK- 178 Query: 201 PIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAP-YGEVVHVKI------PVG 359 S + + +IFVG L PNV E + +FA Y KI V Sbjct: 179 -----------SISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVS 227 Query: 360 KRCGFVQYAN 389 + GFV++ + Sbjct: 228 RGYGFVRFTD 237 Score = 35.4 bits (80), Expect = 0.11 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 7/67 (10%) Frame = +3 Query: 210 NTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG----- 371 NT+ G+ D N TT+++G L+P VTE ++QV+ G+ V VK+ + G Sbjct: 77 NTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136 Query: 372 -FVQYAN 389 FV++A+ Sbjct: 137 CFVEFAS 143
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 123 bits (308), Expect = 4e-28 Identities = 79/210 (37%), Positives = 101/210 (48%), Gaps = 47/210 (22%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y S AK+V D++T SKGYGFVKF + EQ A++EM G+ + R +++GP T+ Sbjct: 187 YASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGP-----TS 241 Query: 183 GVQERVPIPNTNTQGAQSDN---------------------------------------- 242 G Q+ V N + + S N Sbjct: 242 GQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQ 301 Query: 243 -------DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 401 DPNNTT+F+GGL VTED L+ F P+G +V+VKIPVGK CGFVQY +R SA Sbjct: 302 PSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSA 361 Query: 402 EXXXXXXXXXXXXXXNVRLSWGRSPSNKQT 491 E VRLSWGRS KQT Sbjct: 362 EAAIAGMQGFPIANSRVRLSWGRSA--KQT 389 Score = 43.5 bits (101), Expect = 4e-04 Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Frame = +3 Query: 54 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQ 233 ++GY FV F T A A+ + NGM + P N+K N+N Sbjct: 105 NQGYCFVDFPSSTHAANALLK-NGMLIPNFP-------NKKLKLNWATSSYSNSNNS-LN 155 Query: 234 SDNDPNNTTIFVGGLDPNVTEDALKQVFA-PYGEVVHVKI------PVGKRCGFVQYAN 389 + NN +IFVG L PNVTE L ++F Y H KI + K GFV++ N Sbjct: 156 NVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTN 214
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 121 bits (304), Expect = 1e-27 Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 7/164 (4%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAA--NRK 176 YPS AK++ D +T S+ YGFV+F EQ A+ M G C RP+RI A+ +R Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRA 265 Query: 177 TTGVQERVPIPNTNTQGAQSDND-----PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVH 341 + + I T+T Q + D P NTT+FVGGL N++E L+ F P+G +++ Sbjct: 266 SIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILN 325 Query: 342 VKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRS 473 +KIP GK CGFVQY+ + +AE ++RL+WG + Sbjct: 326 IKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 85.5 bits (210), Expect = 1e-16 Identities = 64/224 (28%), Positives = 93/224 (41%), Gaps = 61/224 (27%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTE-------------QARAMTEMNGMPCSSR 143 + SVK +V+TD +T S+ +GFV+FGD E Q RA+ P ++ Sbjct: 216 FKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNM 275 Query: 144 PMRI-----------------------GPA------------ANRKTTGVQERVPIPNTN 218 +++ GP +N P + N Sbjct: 276 MLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPPMHLN 335 Query: 219 TQGAQS------------DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 G + + DP NTT+FVGGL P TE L+ +F P+G +++V+IP GK Sbjct: 336 EGGISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGK 395 Query: 363 RCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGR-SPSNKQT 491 CGFV++ R AE +RLSWGR S SN +T Sbjct: 396 NCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKT 439
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 76.6 bits (187), Expect = 4e-14 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 18/186 (9%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + A+VV D T +SKGYGFV F + + A+ +M G R +R T Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR--------TNWAT 183 Query: 192 ERVPIPNTNTQG---------AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV 344 + P P + + S + PNN T++ GG+ +TE ++Q F+P+G+++ + Sbjct: 184 RKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 243 Query: 345 KIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGR------SPSNKQTQ---P 497 ++ K FV++++ SA V+ WG+ +P +Q Q P Sbjct: 244 RVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYP 303 Query: 498 QEATQW 515 QW Sbjct: 304 PTYGQW 309 Score = 55.1 bits (131), Expect = 1e-07 Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 8/174 (4%) Frame = +3 Query: 15 KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQE 194 K K++ D T + Y FV+F + A A+ MNG + +++ N TT + Sbjct: 34 KNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKV----NWATTPSSQ 87 Query: 195 RVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PV 356 + ++ Q D + +FVG L P +T + +K FAP+G + ++ Sbjct: 88 KKDTSSSTVVSTQRSQD--HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145 Query: 357 GKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWG--RSPSNKQTQPQEATQ 512 K GFV + N+ AE +R +W + P+ K T Q Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199 Score = 31.6 bits (70), Expect = 1.7 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG----FVQYANRPSAEXXXXXXX 425 T++VG L +VTE + Q+F+ G + K+ + FV++ A Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 426 XXXXXXXNVRLSWGRSPSNKQTQPQEAT 509 V+++W +PS+++ +T Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSST 95
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 75.9 bits (185), Expect = 8e-14 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 18/186 (9%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + A+VV D T +SKGYGFV F + + A+ +M G R +R T Sbjct: 132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR--------TNWAT 183 Query: 192 ERVPIPNT----NTQGAQSD-----NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV 344 + P P + NT+ D + P+N T++ GG+ +TE ++Q F+P+G+++ + Sbjct: 184 RKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEI 243 Query: 345 KIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGR------SPSNKQTQ---P 497 ++ K FV++ + SA V+ WG+ +P +Q Q P Sbjct: 244 RVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYP 303 Query: 498 QEATQW 515 Q QW Sbjct: 304 QPYGQW 309 Score = 56.2 bits (134), Expect = 6e-08 Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 12/178 (6%) Frame = +3 Query: 15 KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIG----PAANRKTT 182 K K++ D T + Y FV+F + A A+ MNG + +++ P++ +K T Sbjct: 34 KNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDT 91 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---- 350 V +TQ +Q N+ +FVG L P +T + +K FAP+G + ++ Sbjct: 92 SSSTVV-----STQRSQ-----NHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDM 141 Query: 351 --PVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWG--RSPSNKQTQPQEATQ 512 K GFV + N+ AE +R +W + P+ K T Q Sbjct: 142 ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199 Score = 31.6 bits (70), Expect = 1.7 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG----FVQYANRPSAEXXXXXXX 425 T++VG L +VTE + Q+F+ G + K+ + FV++ A Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67 Query: 426 XXXXXXXNVRLSWGRSPSNKQTQPQEAT 509 V+++W +PS+++ +T Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSST 95
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 75.9 bits (185), Expect = 8e-14 Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 11/182 (6%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + + A+VV D T +SKGYGFV F + + A+ M G R +R T Sbjct: 137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR--------TN 188 Query: 183 GVQERVPIPN----TNTQGAQ-----SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 + P P TNT+ + + + P N T++ GG+ +T+ ++Q F+P+G++ Sbjct: 189 WATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 248 Query: 336 VHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGR-SPS-NKQTQPQEAT 509 + +++ K FV+++ SA V+ WG+ SP K Q + + Sbjct: 249 MEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYS 308 Query: 510 QW 515 QW Sbjct: 309 QW 310 Score = 55.5 bits (132), Expect = 1e-07 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 8/158 (5%) Frame = +3 Query: 63 YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDN 242 Y FV+F + + A A+ MNG RK G + V + T +Q + Sbjct: 67 YCFVEFYEHRDAAAALAAMNG---------------RKILG--KEVKVNWATTPSSQKKD 109 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAE 404 N+ +FVG L P +T + +K FAP+G++ ++ K GFV + N+ AE Sbjct: 110 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169 Query: 405 XXXXXXXXXXXXXXNVRLSWG--RSPSNKQTQPQEATQ 512 +R +W + P+ K TQ Q Sbjct: 170 NAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQ 207
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 74.3 bits (181), Expect = 2e-13 Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 7/178 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + + A+VV D T +SKGYGFV F + + A+ M G R +R A + Sbjct: 120 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA 179 Query: 183 --GVQERVPIPNTNT---QGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 QE NT + + + P N T++ GG+ +T+ ++Q F+P+G+++ ++ Sbjct: 180 PKSTQEN----NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR 235 Query: 348 IPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGR-SPS-NKQTQPQEATQW 515 + K FV+++ SA V+ WG+ SP K Q + +QW Sbjct: 236 VFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQW 293 Score = 57.8 bits (138), Expect = 2e-08 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 8/174 (4%) Frame = +3 Query: 15 KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQE 194 K K++T+ + + Y FV+F + + A A+ MNG RK G + Sbjct: 36 KSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNG---------------RKILG--K 76 Query: 195 RVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PV 356 V + T +Q + N+ +FVG L P +T + +K FAP+G++ ++ Sbjct: 77 EVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGK 136 Query: 357 GKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWG--RSPSNKQTQPQEATQ 512 K GFV + N+ AE +R +W + P+ K TQ Q Sbjct: 137 SKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ 190 Score = 30.8 bits (68), Expect = 2.8 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%) Frame = +3 Query: 237 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG----FVQYANRPSAE 404 ++D T++VG L +VTE + Q+F+ G K+ FV++ A Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62 Query: 405 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 488 V+++W +PS+++ Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQK 90
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 68.9 bits (167), Expect = 9e-12 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V GA+V+ ++ T RS+GYG+V F + + +A+ EM G RP+ + + K G Sbjct: 194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTS-KPAGNN 252 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----- 356 +R + + ++P++ T+F+G L N DA+ ++FA +GEVV V+IP Sbjct: 253 DRA------KKFGDTPSEPSD-TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETE 305 Query: 357 -GKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPSN 482 K G+VQ++N A+ VRL + N Sbjct: 306 QPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPN 348
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 67.4 bits (163), Expect = 3e-11 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 5/137 (3%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGV 188 +V +V D +T RS GYG+V F +P + ARA+ E+N +P +P+R+ + Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRD----- 115 Query: 189 QERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV---- 356 P+ GA + IF+ LD ++ AL F+ +G +V K+ V Sbjct: 116 ------PSVRRSGAGN--------IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSG 161 Query: 357 -GKRCGFVQYANRPSAE 404 K GFVQYAN SA+ Sbjct: 162 QSKGYGFVQYANEESAQ 178 Score = 61.6 bits (148), Expect = 1e-09 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 5/138 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + A V+ D +SKG+GFV F + + ARA+ +NG + +G A + Sbjct: 238 YGKITSAVVMKDGEG-KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSER 296 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---P 353 + RV + A N ++V LDP+++++ LK++F+P+G V K+ P Sbjct: 297 ETELRVRYEQNLKEAADKFQSSN---LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP 353 Query: 354 VG--KRCGFVQYANRPSA 401 G K GFV +A A Sbjct: 354 NGTSKGSGFVAFATPEEA 371 Score = 52.8 bits (125), Expect = 7e-07 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 5/138 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KV D + +SKGYGFV++ + +A+ ++NGM + + + +GP R Sbjct: 147 FGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRR--- 202 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---- 350 QER + N T ++V L + T+D LK F YG++ + Sbjct: 203 --QER----------DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG 250 Query: 351 -PVGKRCGFVQYANRPSA 401 K GFV + N A Sbjct: 251 EGKSKGFGFVNFENADDA 268 Score = 39.3 bits (90), Expect = 0.008 Identities = 33/126 (26%), Positives = 53/126 (42%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + +V +KV+ D SKG GFV F P E AM++++G S+P+ + A ++ Sbjct: 341 FGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 V+ + Q P GG P + + Q+F YG+ IP Sbjct: 400 RVRLQAQFSQVRPVAMQPSVGPRMPVYPPGG--PGIGQ----QMF--YGQAPPAMIPPQP 451 Query: 363 RCGFVQ 380 G+ Q Sbjct: 452 GYGYQQ 457 Score = 34.7 bits (78), Expect = 0.20 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +3 Query: 219 TQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 T G + NT+++VG LD NVT+ L F G VV V++ Sbjct: 24 TSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRV 67
>YBKC_SCHPO (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II| Length = 352 Score = 59.3 bits (142), Expect = 7e-09 Identities = 39/154 (25%), Positives = 63/154 (40%) Frame = +3 Query: 54 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQ 233 S F+ + ++ A EM G C R + + + K T + P Q Sbjct: 111 STSIAFIWLANESDIQNAQVEMQGAFCLKRSILVHSVKSDKNTYLSS--PGFYGTPQPLN 168 Query: 234 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXX 413 DPNNT ++V L N+T L+ F +GE+++ + V G + +A R AE Sbjct: 169 QFTDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQ--VNNNSGRIVFAQRYFAEQAI 226 Query: 414 XXXXXXXXXXXNVRLSWGRSPSNKQTQPQEATQW 515 ++LSW R PS +++T W Sbjct: 227 NEMNNFPLHGVRIQLSWARPPSMALLPSKQSTYW 260
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 58.5 bits (140), Expect = 1e-08 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 ++ K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ +++ A Sbjct: 72 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------- 122 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------P 353 + S D N ++V GL +T+ L+Q+F+ YG ++ +I Sbjct: 123 ---------RPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 170 Query: 354 VGKRCGFVQYANRPSAEXXXXXXXXX--XXXXXNVRLSWGRSPSNKQTQ 494 V + GF+++ R AE + + + +PS K +Q Sbjct: 171 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 219 Score = 35.4 bits (80), Expect = 0.11 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V KV+ D T + KG+GFV + E A A+ +NG R +++ N+ Sbjct: 320 FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376 Score = 35.0 bits (79), Expect = 0.15 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 6/114 (5%) Frame = +3 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 GP +N P+ GA +D+ + T + V L N+T++ + +F GE+ Sbjct: 15 GPTSNTSNGPSSNNRNCPSPMQTGATTDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEI 72 Query: 336 VHVKIPVGK------RCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS 479 K+ K GFV Y + AE +++S+ R S Sbjct: 73 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKV 328 Score = 29.3 bits (64), Expect = 8.2 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 125 Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 155 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 58.5 bits (140), Expect = 1e-08 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 ++ K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ +++ A Sbjct: 77 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------- 127 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------P 353 + S D N ++V GL +T+ L+Q+F+ YG ++ +I Sbjct: 128 ---------RPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 175 Query: 354 VGKRCGFVQYANRPSAEXXXXXXXXX--XXXXXNVRLSWGRSPSNKQTQ 494 V + GF+++ R AE + + + +PS K +Q Sbjct: 176 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 224 Score = 35.4 bits (80), Expect = 0.11 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V KV+ D T + KG+GFV + E A A+ +NG R +++ N+ Sbjct: 325 FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381 Score = 35.0 bits (79), Expect = 0.15 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 6/114 (5%) Frame = +3 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 GP +N P+ GA +D+ + T + V L N+T++ + +F GE+ Sbjct: 20 GPTSNTSNGPSSNNRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEI 77 Query: 336 VHVKIPVGK------RCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS 479 K+ K GFV Y + AE +++S+ R S Sbjct: 78 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 131 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKV 333 Score = 29.3 bits (64), Expect = 8.2 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 125 Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 160 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 58.5 bits (140), Expect = 1e-08 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 8/169 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 ++ K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ +++ A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------- 115 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------P 353 + S D N ++V GL +T+ L+Q+F+ YG ++ +I Sbjct: 116 ---------RPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 354 VGKRCGFVQYANRPSAEXXXXXXXXX--XXXXXNVRLSWGRSPSNKQTQ 494 V + GF+++ R AE + + + +PS K +Q Sbjct: 164 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212 Score = 35.4 bits (80), Expect = 0.11 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V KV+ D T + KG+GFV + E A A+ +NG R +++ N+ Sbjct: 313 FGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369 Score = 35.0 bits (79), Expect = 0.15 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 6/114 (5%) Frame = +3 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 GP +N P+ GA +D+ + T + V L N+T++ + +F GE+ Sbjct: 8 GPTSNTSNGPSSNNRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEI 65 Query: 336 VHVKIPVGK------RCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS 479 K+ K GFV Y + AE +++S+ R S Sbjct: 66 ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IFV L P+ E L Q+F P+G V +VK+ Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKV 321 Score = 29.3 bits (64), Expect = 8.2 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 125 Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 58.5 bits (140), Expect = 1e-08 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 5/131 (3%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 KV+ D + RS+G+GFV +G+ E +A+TEMNG + R + +G A R ++ + Sbjct: 221 KVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR----IERQGE 275 Query: 204 IPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRC 368 + Q Q N ++V LD + +D L++ F+PYG + K+ K Sbjct: 276 LKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGF 335 Query: 369 GFVQYANRPSA 401 GFV +++ A Sbjct: 336 GFVCFSSPEEA 346 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + + KVV D+ S+GYGFV F RA+ MNGM + R + +G +R+ Sbjct: 122 FGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 ++ + T +++ ++ + LK++F+ +G + VK+ + Sbjct: 180 ELEYGAKVMEF-------------TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN 226 Query: 357 ---GKRCGFVQYANRPSAE 404 + GFV Y N A+ Sbjct: 227 SGRSRGFGFVNYGNHEEAQ 245 Score = 44.3 bits (103), Expect = 2e-04 Identities = 22/58 (37%), Positives = 35/58 (60%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 Y ++ KV+T+ SKG+GFV F P E +A+TEMNG S++P+ + A ++ Sbjct: 317 YGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372 Score = 43.5 bits (101), Expect = 4e-04 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + +V D T RS GY ++ F P + RA+ MN RP+RI Sbjct: 37 IMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRI------------ 84 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGK 362 + + G + N +F+ LD ++ AL F+ +G+++ K+ G Sbjct: 85 ----MWSQRDPGLRKSGVGN---VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS 137 Query: 363 R-CGFVQYANRPSA 401 R GFV + + +A Sbjct: 138 RGYGFVHFETQEAA 151 Score = 30.0 bits (66), Expect = 4.8 Identities = 10/31 (32%), Positives = 22/31 (70%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 ++++G L P+VTE L + F+P G ++ +++ Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRV 42
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 58.2 bits (139), Expect = 2e-08 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 9/136 (6%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIG---PAANRKT 179 +V+ +V+ DK+T RS+G+GFV E A + NG R +R+ P R+ Sbjct: 112 NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN 171 Query: 180 TGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV- 356 + +E + G D ++ ++VG L V +DAL+ +F+ G+VV K+ Sbjct: 172 SSFRENSSFRGGSRGGGSFD---SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYD 228 Query: 357 -----GKRCGFVQYAN 389 + GFV Y++ Sbjct: 229 RDSGRSRGFGFVTYSS 244 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 V AKVV D+ + RS+G+GFV + E A+ ++G+ + R +R+ PA R Sbjct: 220 VVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 5/131 (3%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 KV+ D T RS+G+GFV +G+ E +A++EMNG + R + +G A R ++ + Sbjct: 221 KVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR----IERQGE 275 Query: 204 IPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRC 368 + Q Q N ++V LD + +D L++ F+PYG + K+ K Sbjct: 276 LKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGF 335 Query: 369 GFVQYANRPSA 401 GFV +++ A Sbjct: 336 GFVCFSSPEEA 346 Score = 47.0 bits (110), Expect = 4e-05 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D+ S+GYGFV F RA+ MNGM + R + +G +R+ Sbjct: 122 FGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 ++ + T +++ ++ + L+++F+ +G + VK+ + Sbjct: 180 ELEYGAKVMEF-------------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD 226 Query: 357 ---GKRCGFVQYANRPSAE 404 + GFV Y N A+ Sbjct: 227 TGRSRGFGFVNYGNHEEAQ 245 Score = 45.8 bits (107), Expect = 8e-05 Identities = 23/58 (39%), Positives = 36/58 (62%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 Y ++ AKV+T+ SKG+GFV F P E +A+TEMNG S++P+ + A ++ Sbjct: 317 YGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 4/134 (2%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + +V D T RS GY ++ F P + RA+ MN RP+RI Sbjct: 37 IMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRI------------ 84 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----G 359 + + G + N +F+ LD ++ AL F+ +G ++ K+ Sbjct: 85 ----MWSQRDPGLRKSGVGN---VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS 137 Query: 360 KRCGFVQYANRPSA 401 + GFV + + +A Sbjct: 138 RGYGFVHFETQEAA 151 Score = 30.4 bits (67), Expect = 3.7 Identities = 11/31 (35%), Positives = 22/31 (70%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 +++VG L P+VTE L + F+P G ++ +++ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRV 42
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 57.4 bits (137), Expect = 3e-08 Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 ++ K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ +++ A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--------- 115 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------P 353 + S D N ++V GL +++ ++Q+F+ YG ++ +I Sbjct: 116 ---------RPSSASIRDAN---LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATG 163 Query: 354 VGKRCGFVQYANRPSAE 404 V + GF+++ R AE Sbjct: 164 VSRGVGFIRFDKRIEAE 180 Score = 37.0 bits (84), Expect = 0.039 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 6/98 (6%) Frame = +3 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------R 365 +PN G D + T + V L N+T+D K +F G++ K+ K Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLG 81 Query: 366 CGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS 479 GFV Y++ A+ +++S+ R S Sbjct: 82 YGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119 Score = 34.3 bits (77), Expect = 0.26 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + +V KV+ D T + KG+GFV + E A A+ +NG R +++ Sbjct: 307 FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQV 357 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IFV L P E L Q+F P+G V +VK+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKV 315
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 57.4 bits (137), Expect = 3e-08 Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 ++ K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ +++ A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA--------- 115 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------P 353 + S D N ++V GL +++ ++Q+F+ YG ++ +I Sbjct: 116 ---------RPSSASIRDAN---LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTG 163 Query: 354 VGKRCGFVQYANRPSAE 404 V + GF+++ R AE Sbjct: 164 VSRGVGFIRFDKRIEAE 180 Score = 37.0 bits (84), Expect = 0.039 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 6/98 (6%) Frame = +3 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------R 365 +PN G D + T + V L N+T+D K +F G++ K+ K Sbjct: 22 LPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLG 81 Query: 366 CGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS 479 GFV Y++ A+ +++S+ R S Sbjct: 82 YGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSS 119 Score = 34.3 bits (77), Expect = 0.26 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + +V KV+ D T + KG+GFV + E A A+ +NG R +++ Sbjct: 307 FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQV 357 Score = 32.0 bits (71), Expect = 1.3 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IFV L P E L Q+F P+G V +VK+ Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKV 315 Score = 29.3 bits (64), Expect = 8.2 Identities = 12/41 (29%), Positives = 24/41 (58%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 125 Y + ++++ D++T S+G GF++F E A+ +NG Sbjct: 148 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 57.4 bits (137), Expect = 3e-08 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 ++ K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ +++ A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------- 115 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------P 353 + S D N ++V GL +T+ L+Q+F+ YG ++ +I Sbjct: 116 ---------RPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 354 VGKRCGFVQYANRPSAE 404 + + GF+++ R AE Sbjct: 164 ISRGVGFIRFDKRIEAE 180 Score = 37.7 bits (86), Expect = 0.023 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 44/160 (27%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM--PCSSRPMRI------- 155 Y + ++++ D++T S+G GF++F E A+ +NG P ++ P+ + Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 207 Query: 156 --------------------GPAANRKTT-----------GVQERVPIPNTNTQGAQSDN 242 GP A + GV+ P+ N Sbjct: 208 QKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGIN 267 Query: 243 DPNNT----TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 P + IFV L P+ E L Q+F P+G V +VK+ Sbjct: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKV 307 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V KV+ D T + KG+GFV + E A A+ +NG R +++ N+ Sbjct: 299 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355 Score = 33.1 bits (74), Expect = 0.57 Identities = 29/119 (24%), Positives = 41/119 (34%), Gaps = 11/119 (9%) Frame = +3 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNT-----TIFVGGLDPNVTEDALKQVFA 320 GP N G P T S D NT + L N+T++ LK +F Sbjct: 8 GPTCNNTANG-------PTTVNNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFG 60 Query: 321 PYGEVVHVKIPVGK------RCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS 479 GE+ K+ K GFV Y + AE +++S+ R S Sbjct: 61 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 57.4 bits (137), Expect = 3e-08 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 ++ K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ +++ A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------- 115 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------P 353 + S D N ++V GL +T+ L+Q+F+ YG ++ +I Sbjct: 116 ---------RPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 354 VGKRCGFVQYANRPSAE 404 + + GF+++ R AE Sbjct: 164 ISRGVGFIRFDKRIEAE 180 Score = 37.7 bits (86), Expect = 0.023 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 44/160 (27%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM--PCSSRPMRI------- 155 Y + ++++ D++T S+G GF++F E A+ +NG P ++ P+ + Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 207 Query: 156 --------------------GPAANRKTT-----------GVQERVPIPNTNTQGAQSDN 242 GP A + GV+ P+ N Sbjct: 208 QKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGIN 267 Query: 243 DPNNT----TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 P + IFV L P+ E L Q+F P+G V +VK+ Sbjct: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKV 307 Score = 35.8 bits (81), Expect = 0.088 Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 7/115 (6%) Frame = +3 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDN-DPNNTTIFVGGLDPNVTEDALKQVFAPYGE 332 GP N G I N + S N + + T + V L N+T++ LK +F GE Sbjct: 8 GPTCNNTANGP---TTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE 64 Query: 333 VVHVKIPVGK------RCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS 479 + K+ K GFV Y + AE +++S+ R S Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V KV+ D T + KG+GFV + E A A+ +NG R +++ N+ Sbjct: 299 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 57.4 bits (137), Expect = 3e-08 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 ++ K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ +++ A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------- 115 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------P 353 + S D N ++V GL +T+ L+Q+F+ YG ++ +I Sbjct: 116 ---------RPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 354 VGKRCGFVQYANRPSAE 404 + + GF+++ R AE Sbjct: 164 ISRGVGFIRFDKRIEAE 180 Score = 37.7 bits (86), Expect = 0.023 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 44/160 (27%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM--PCSSRPMRI------- 155 Y + ++++ D++T S+G GF++F E A+ +NG P ++ P+ + Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 207 Query: 156 --------------------GPAANRKTT-----------GVQERVPIPNTNTQGAQSDN 242 GP A + GV+ P+ N Sbjct: 208 QKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGIN 267 Query: 243 DPNNT----TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 P + IFV L P+ E L Q+F P+G V +VK+ Sbjct: 268 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKV 307 Score = 35.8 bits (81), Expect = 0.088 Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 7/115 (6%) Frame = +3 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDN-DPNNTTIFVGGLDPNVTEDALKQVFAPYGE 332 GP N G I N + S N + + T + V L N+T++ LK +F GE Sbjct: 8 GPTCNNTANGP---TTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGE 64 Query: 333 VVHVKIPVGK------RCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS 479 + K+ K GFV Y + AE +++S+ R S Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V KV+ D T + KG+GFV + E A A+ +NG R +++ N+ Sbjct: 299 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 57.4 bits (137), Expect = 3e-08 Identities = 38/168 (22%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 +K + D +T + KG+ FV++ P A+ +MNG R +++G +N + Sbjct: 156 IKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSN-----MP 210 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG---- 359 + + + + A+S N I+V + P+++E+ +K VF +G +++ K+ G Sbjct: 211 QAQQVIDEVQEEAKSFN-----RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLH 265 Query: 360 --KRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQTQP 497 K GF++YAN+ + + +R+ +P N P Sbjct: 266 THKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALACP 313
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 57.4 bits (137), Expect = 3e-08 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 ++ K+V DK+T +S GYGFV + DP + +A+ +NG+ ++ +++ A Sbjct: 65 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--------- 115 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------P 353 + S D N ++V GL +T+ L+Q+F+ YG ++ +I Sbjct: 116 ---------RPSSASIRDAN---LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163 Query: 354 VGKRCGFVQYANRPSAE 404 + + GF+++ R AE Sbjct: 164 ISRGVGFIRFDKRIEAE 180 Score = 36.6 bits (83), Expect = 0.051 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 45/161 (27%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM--PCSSRPMRI------- 155 Y + ++++ D++T S+G GF++F E A+ +NG P ++ P+ + Sbjct: 148 YGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 207 Query: 156 --------------------GPAANRKTT-----------GVQERV-PIPNTNTQGAQSD 239 GP A + GV+ R P+ Sbjct: 208 QKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGI 267 Query: 240 NDPNNT----TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 N P + IFV L P+ E L Q+F P+G V +VK+ Sbjct: 268 NIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKV 308 Score = 35.8 bits (81), Expect = 0.088 Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 11/119 (9%) Frame = +3 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNT-----TIFVGGLDPNVTEDALKQVFA 320 GP N G P T S D NT + V L N+T++ LK +F Sbjct: 8 GPTCNNTANG-------PTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG 60 Query: 321 PYGEVVHVKIPVGK------RCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPS 479 GE+ K+ K GFV Y + AE +++S+ R S Sbjct: 61 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V KV+ D T + KG+GFV + E A A+ +NG R +++ N+ Sbjct: 300 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 356
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 56.2 bits (134), Expect = 6e-08 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 5/122 (4%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 RS+G+GFV +G+ E +A++EMNG + R + +G A R ++ + + Q Sbjct: 229 RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR----IERQSELKRKFEQIK 284 Query: 231 QSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGFVQYANRP 395 Q N ++V LD + +D L++ F PYG + K+ K GFV +++ Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPE 344 Query: 396 SA 401 A Sbjct: 345 EA 346 Score = 46.6 bits (109), Expect = 5e-05 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D+ S+GYGFV F RA+ MNGM + R + +G +R+ Sbjct: 122 FGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 ++ + T +++ ++ + L+++F+ +G + VK+ + Sbjct: 180 ELEYGAKVMEF-------------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD 226 Query: 357 ---GKRCGFVQYANRPSAE 404 + GFV Y N A+ Sbjct: 227 SGRSRGFGFVNYGNHEEAQ 245 Score = 45.8 bits (107), Expect = 8e-05 Identities = 23/58 (39%), Positives = 36/58 (62%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 Y ++ AKV+T+ SKG+GFV F P E +A+TEMNG S++P+ + A ++ Sbjct: 317 YGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372 Score = 30.0 bits (66), Expect = 4.8 Identities = 10/31 (32%), Positives = 22/31 (70%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 ++++G L P+VTE L + F+P G ++ +++ Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRV 42
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 55.8 bits (133), Expect = 8e-08 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 17/151 (11%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMP-----------CSSRPM 149 Y ++ GA+V+ D + RSKGYG+V F P E A+A NG + RP Sbjct: 286 YGTIVGARVIMDGQSGRSKGYGYVDFETP-EAAKAAVAANGTKEIDGRMVNLDLSNPRPA 344 Query: 150 RIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYG 329 P A ++ +++ P + T+FVG L N TED L F G Sbjct: 345 NPQPYAQQRAGNFGDQLSEP--------------SDTVFVGNLSFNATEDDLSTAFGGCG 390 Query: 330 EVVHVKIPVG------KRCGFVQYANRPSAE 404 ++ +++P K G+V +++ SA+ Sbjct: 391 DIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421 Score = 31.6 bits (70), Expect = 1.7 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 7/106 (6%) Frame = +3 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRC 368 P T+ +Q N+ T+FVG L NV + L Q F YG +V ++ + K Sbjct: 249 PAKITKPSQDSNE--TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGY 306 Query: 369 GFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGR-SPSNKQTQPQE 503 G+V + +A+ V L P+N Q Q+ Sbjct: 307 GYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQ 352
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 54.7 bits (130), Expect = 2e-07 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 5/126 (3%) Frame = +3 Query: 42 MTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNT 221 +T RS GY +V F +P + +RAM +N P RP+RI +NR P+T Sbjct: 80 LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRI-MLSNRD----------PSTRL 128 Query: 222 QGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-----GKRCGFVQYA 386 G +F+ LD ++ AL + F+ +G ++ K+ + K GFVQ+ Sbjct: 129 SG--------KGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFE 180 Query: 387 NRPSAE 404 +A+ Sbjct: 181 KEETAQ 186 Score = 50.4 bits (119), Expect = 3e-06 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 5/138 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KV D + RSKGYGFV+F A+ ++NGM + + + +G R Sbjct: 155 FGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR--- 210 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIP 353 Q+R ++S P+ T ++V L +T+D LK+ F YG++ V +K Sbjct: 211 --QDRA--------RSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ 260 Query: 354 VG--KRCGFVQYANRPSA 401 G + GFV + + +A Sbjct: 261 SGNSRSFGFVNFVSPEAA 278 Score = 50.1 bits (118), Expect = 4e-06 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 5/138 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + A V+ D+ + S+ +GFV F P A A+ +MNG+ + +G A + Sbjct: 248 YGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDR 306 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 + R + N +++ LD +V ++ LK++F+ YG V K+ + Sbjct: 307 EEELRRKFEQERISRFEKLQGSN---LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS 363 Query: 363 R-----CGFVQYANRPSA 401 + GFV Y+N A Sbjct: 364 QGLSRGFGFVAYSNPEEA 381 Score = 38.5 bits (88), Expect = 0.014 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 Y +V KV+ + + S+G+GFV + +P E AM EMNG +P+ + A ++ Sbjct: 351 YGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKE 407
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 54.7 bits (130), Expect = 2e-07 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 13/164 (7%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI--GPAANRKTT 182 +V+ +V+ DK+T RS+G+GFV +E A + NG RP+R+ GP ++ Sbjct: 116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRED 175 Query: 183 GVQERVPIPNTNTQGA-----QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 G R P + + G+ + ++VG L V + AL+ +F+ G+VV + Sbjct: 176 GF-SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234 Query: 348 IPV------GKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLS 461 + K GFV Y + + +R+S Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278 Score = 36.2 bits (82), Expect = 0.067 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 A+V+ D+ + RSKG+GFV + E A+ ++G R +R+ A R Sbjct: 233 ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 54.3 bits (129), Expect = 2e-07 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 3/93 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAA---NR 173 +PS V+ D T S+GYGFV F + AM M G + RP+RI AA N Sbjct: 184 FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNN 243 Query: 174 KTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVG 272 Q+R N N G + N+ NN + +G Sbjct: 244 NNNNYQQRRNYGNNNRGGFRQYNNNNNNNMNMG 276 Score = 45.1 bits (105), Expect = 1e-04 Identities = 37/138 (26%), Positives = 50/138 (36%), Gaps = 6/138 (4%) Frame = +3 Query: 108 MTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI---PNTNTQGAQS---DNDPNNTTIFV 269 M GMP SS M IG Q+ I P N Q P TT ++ Sbjct: 285 MNNSRGMPPSSMGMPIGAMPLPSQGQPQQSQTIGLPPQVNPQAVDHIIRSAPPRVTTAYI 344 Query: 270 GGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXN 449 G + TE L +F +G ++ K K C F++Y A N Sbjct: 345 GNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 404 Query: 450 VRLSWGRSPSNKQTQPQE 503 +R WG+ SN Q Q+ Sbjct: 405 LRTGWGKERSNFMPQQQQ 422 Score = 38.5 bits (88), Expect = 0.014 Identities = 18/48 (37%), Positives = 28/48 (58%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYA 386 + ++ ++VG LD +TED LKQ F G + ++KI + K V YA Sbjct: 70 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYA 117
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 53.9 bits (128), Expect = 3e-07 Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 9/123 (7%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDP----TEQARAMTEMNG-----MPCSSRPMRI 155 Y V ++ DK T +S+G+GFVKF DP T A ++G PC+ R M+ Sbjct: 33 YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ- 91 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 P R G Q +G +SDN +N IFVGG+ N E L++ F +G V Sbjct: 92 -PERTRPKEGWQ----------KGPRSDNSKSN-KIFVGGIPHNCGETELREYFKKFGVV 139 Query: 336 VHV 344 V Sbjct: 140 TEV 142 Score = 34.7 bits (78), Expect = 0.20 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQY 383 +FVGGLD + T++ L+ F+ YGEVV I K GFV++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 53.5 bits (127), Expect = 4e-07 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 8/135 (5%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI--GPAANRKTT 182 +V+ +V+ DK+T RS+G+GFV E A + NG R +R+ GP ++ Sbjct: 112 NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKR-- 169 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 E + G D ++ ++VG L V +DAL+ +F+ G+VV K+ Sbjct: 170 ---ENSSFRGGSRGGGSFD---SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 223 Query: 357 ----GKRCGFVQYAN 389 + GFV Y++ Sbjct: 224 DSGRSRGFGFVTYSS 238 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/54 (37%), Positives = 32/54 (59%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 V AKVV D+ + RS+G+GFV + E A+ ++G+ + R +R+ PA R Sbjct: 214 VVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 53.5 bits (127), Expect = 4e-07 Identities = 38/133 (28%), Positives = 59/133 (44%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 YPS AKV D +T +S G+G++ F D E +AM E+N + + +RI P+ T Sbjct: 114 YPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTF 173 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 N T S+ NN P +T F+ YG+++ K+ K Sbjct: 174 R-------KNFGTNVFFSNLPLNN---------PLLTTRVFYDTFSRYGKILSCKLDSRK 217 Query: 363 RCGFVQYANRPSA 401 GFV + + +A Sbjct: 218 DIGFVYFEDEKTA 230 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAE 404 +F+G L VTE+ LK +F Y V K+ V K+ G++ + ++ AE Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAE 146
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 53.1 bits (126), Expect = 5e-07 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 9/123 (7%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDP----TEQARAMTEMNG-----MPCSSRPMRI 155 Y V ++ DK T +S+G+GFVKF DP T A ++G PC+ R M+ Sbjct: 33 YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ- 91 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 P +R G Q++ P +++N +N IFVGG+ N E LK+ F +G V Sbjct: 92 -PERSRPREGWQQKEP---------RTENSRSN-KIFVGGIPHNCGETELKEYFNRFGVV 140 Query: 336 VHV 344 V Sbjct: 141 TEV 143 Score = 34.7 bits (78), Expect = 0.20 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQY 383 +FVGGLD + T++ L+ F+ YGEVV I K GFV++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 52.4 bits (124), Expect = 9e-07 Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 5/137 (3%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGV 188 +V +V D+ RS GY ++ F +P + RAM +N P RP+RI +NR Sbjct: 74 NVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRI-MLSNRD---- 127 Query: 189 QERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV---- 356 P+T G IF+ LD ++ AL + F+ +G ++ K+ + Sbjct: 128 ------PSTRLSG--------KGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTG 173 Query: 357 -GKRCGFVQYANRPSAE 404 K GFVQ+ SA+ Sbjct: 174 RSKGYGFVQFEKEESAQ 190 Score = 50.4 bits (119), Expect = 3e-06 Identities = 34/111 (30%), Positives = 53/111 (47%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KV D +T RSKGYGFV+F A+ ++NGM + + + +G R Sbjct: 159 FGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRR--- 214 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 QER NT T P T ++V L + ED L++ F +G + Sbjct: 215 --QERARDENTPT--------PRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255 Score = 45.1 bits (105), Expect = 1e-04 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V + VV + S+ +GFV F A A+ +MNG+ + +G A + + Sbjct: 254 VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEE 313 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVG- 359 R + N +++ LD +V ++ LK++F+ YG V K+ P G Sbjct: 314 LRRKFEQERINRFEKSQGAN---LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM 370 Query: 360 -KRCGFVQYANRPSA 401 + GFV Y+N A Sbjct: 371 SRGFGFVAYSNPEEA 385 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/58 (36%), Positives = 35/58 (60%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 Y +V +KV+ + M S+G+GFV + +P E RA++EMNG +P+ I A ++ Sbjct: 355 YGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKE 411 Score = 32.7 bits (73), Expect = 0.74 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = +3 Query: 180 TGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 T VQ V IP + PN++ ++ G LDP VTE L +F VV V++ Sbjct: 25 TSVQVPVSIPLPSPVVVADQTHPNSS-LYAGDLDPKVTEAHLFDLFKHVANVVSVRV 80
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 52.0 bits (123), Expect = 1e-06 Identities = 35/120 (29%), Positives = 61/120 (50%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V+ A+V+ ++ T RS+G+GFV E +A+ +NG R + + AA R G Sbjct: 81 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR---GSP 137 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 ER P + D +P + ++VG L +V L+Q+F+ +G+VV ++ + G Sbjct: 138 ERAP---------RGDFEP-SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETG 187 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/54 (35%), Positives = 30/54 (55%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 V A+VV+D+ T RS+G+GFV +E A+ ++G R +R+ A R Sbjct: 175 VVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 52.0 bits (123), Expect = 1e-06 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 9/123 (7%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDP----TEQARAMTEMNG-----MPCSSRPMRI 155 Y V ++ DK T +S+G+GFVKF DP T A ++G PC+ R M+ Sbjct: 33 YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ- 91 Query: 156 GPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 P R G Q +G +SD+ +N IFVGG+ N E L++ F +G V Sbjct: 92 -PERTRPKEGWQ----------KGPRSDSSKSN-KIFVGGIPHNCGETELREYFKKFGVV 139 Query: 336 VHV 344 V Sbjct: 140 TEV 142 Score = 34.7 bits (78), Expect = 0.20 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQY 383 +FVGGLD + T++ L+ F+ YGEVV I K GFV++ Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 51.6 bits (122), Expect = 2e-06 Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 19/179 (10%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI--GPAANRKTT 182 +V+ +V+ DK+T RS+G+GFV E A + NG R +R+ GPA ++ Sbjct: 112 NVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKREN 171 Query: 183 GVQERVPIPNTNTQGAQSDND-----------PNNTTIFVGGLDPNVTEDALKQVFAPYG 329 N++ G + N ++ ++VG L V + ALK++F+ G Sbjct: 172 SSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQG 231 Query: 330 EVVHVKIPV------GKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQ 488 VV K+ + GFV Y++ ++R+S +Q Sbjct: 232 NVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQ 290
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 51.6 bits (122), Expect = 2e-06 Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 5/131 (3%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 KV+TD+ + +SKG+GFV F + +A+ EMNG + + + +G A + V+ + Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK----VERQTE 275 Query: 204 IPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRC 368 + T Q Q ++V LD + ++ L++ F+P+G + K+ + K Sbjct: 276 LKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF 335 Query: 369 GFVQYANRPSA 401 GFV +++ A Sbjct: 336 GFVCFSSPEEA 346 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Frame = +3 Query: 54 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQ 233 SKGYGFV F RA+ +MNGM + R + +G +RK + GA+ Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE----------LGAR 186 Query: 234 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-----GKRCGFVQYANRPS 398 + PN +++ ++ ++ LK +F +G + VK+ K GFV + Sbjct: 187 AKEFPN---VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 243 Query: 399 AE 404 A+ Sbjct: 244 AQ 245 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/58 (36%), Positives = 36/58 (62%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 + ++ AKV+ + RSKG+GFV F P E +A+TEMNG +++P+ + A ++ Sbjct: 317 FGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 33.1 bits (74), Expect = 0.57 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 7/85 (8%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRCGFVQYANRPSAEXXXXX 419 +++VG L P+VTE L + F+P G ++ ++I +V + + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71 Query: 420 XXXXXXXXXNVRLSWG-RSPSNKQT 491 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/77 (33%), Positives = 41/77 (53%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 K++ D T RSKGY F++F D A A+ +NG SR ++ G ++N +GV ++ Sbjct: 48 KMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDISGVSQQQQ 107 Query: 204 IPNTNTQGAQSDNDPNN 254 N G ++N NN Sbjct: 108 QQYNNINGNNNNNGNNN 124
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 49.7 bits (117), Expect = 6e-06 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 6/140 (4%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE-MNGMPCSSRPMRIGPAANRKT 179 + + KV D++ +KGYGFV F D E A A E +NGM + + + +G +R+ Sbjct: 191 FGKILSCKVAVDELG-NAKGYGFVHF-DSVESANAAIEHVNGMLLNDKKVYVGHHVSRR- 247 Query: 180 TGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG 359 Q N T +++ LD +TE +F +GE+ + + Sbjct: 248 ------------ERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD 295 Query: 360 KR-----CGFVQYANRPSAE 404 + GFV YAN A+ Sbjct: 296 QNDKPRGFGFVNYANHECAQ 315 Score = 47.0 bits (110), Expect = 4e-05 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 10/140 (7%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANRK 176 V +V D +T RS GY +V F + + +A+ E+N RP RI P+ + Sbjct: 106 VASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKM 165 Query: 177 TTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV 356 TG +F+ LDP + AL F+ +G+++ K+ V Sbjct: 166 GTG------------------------NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201 Query: 357 -----GKRCGFVQYANRPSA 401 K GFV + + SA Sbjct: 202 DELGNAKGYGFVHFDSVESA 221 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/72 (30%), Positives = 39/72 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ AK++TD+ +SKG+GFV + P E +A+TEMN + +P+ + A ++ Sbjct: 387 FGTITSAKIMTDEQG-KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVR 445 Query: 183 GVQERVPIPNTN 218 Q I N Sbjct: 446 RSQLEAQIQARN 457 Score = 35.8 bits (81), Expect = 0.088 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 7/97 (7%) Frame = +3 Query: 210 NTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---G 371 N ++ S P + +++VG LDP+VTE L ++F G V +++ V +R Sbjct: 65 NASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYA 124 Query: 372 FVQYANRPSAEXXXXXXXXXXXXXXNVRLSWG-RSPS 479 +V + N E R+ W R PS Sbjct: 125 YVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPS 161 Score = 35.4 bits (80), Expect = 0.11 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 5/122 (4%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 + +G+GFV + + +A+ E+N + + +G A + + R Sbjct: 299 KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELR---KRYEQMKL 355 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-----GKRCGFVQYANRP 395 + N +F+ L V ++ LK F+ +G + KI K GFV Y Sbjct: 356 EKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPE 415 Query: 396 SA 401 A Sbjct: 416 EA 417
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.7 bits (117), Expect = 6e-06 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 KV+TD+ + +SKG+GFV F + +A+ EMNG + + + +G A + V+ + Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK----VERQTE 275 Query: 204 IPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRC 368 + Q Q ++V LD + ++ L++ F+P+G + K+ + K Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335 Query: 369 GFVQYANRPSA 401 GFV +++ A Sbjct: 336 GFVCFSSPEEA 346 Score = 47.8 bits (112), Expect = 2e-05 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D+ SKGYGFV F RA+ +MNGM + R + +G +RK Sbjct: 122 FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 + GA++ T +++ ++ ++ LK++F +G + VK+ Sbjct: 180 EAE----------LGARA---KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226 Query: 357 ---GKRCGFVQYANRPSAE 404 K GFV + A+ Sbjct: 227 SGKSKGFGFVSFERHEDAQ 245 Score = 45.8 bits (107), Expect = 8e-05 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANRKTTGV 188 +V D +T RS GY +V F P + RA+ MN +P+RI P+ + G Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG- 99 Query: 189 QERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV---- 356 IF+ LD ++ AL F+ +G ++ K+ Sbjct: 100 -----------------------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 357 GKRCGFVQYANRPSAE 404 K GFV + + +AE Sbjct: 137 SKGYGFVHFETQEAAE 152 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/58 (36%), Positives = 36/58 (62%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 + ++ AKV+ + RSKG+GFV F P E +A+TEMNG +++P+ + A ++ Sbjct: 317 FGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 419 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 420 XXXXXXXXXNVRLSWG-RSPSNKQT 491 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.7 bits (117), Expect = 6e-06 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 KV+TD+ + +SKG+GFV F + +A+ EMNG + + + +G A + V+ + Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK----VERQTE 275 Query: 204 IPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRC 368 + Q Q ++V LD + ++ L++ F+P+G + K+ + K Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335 Query: 369 GFVQYANRPSA 401 GFV +++ A Sbjct: 336 GFVCFSSPEEA 346 Score = 46.2 bits (108), Expect = 6e-05 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D+ SKGYGFV F RA+ +MNGM + R + +G ++K Sbjct: 122 FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 + GA++ T +++ ++ ++ LK++F +G + VK+ Sbjct: 180 EAE----------LGARA---KEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226 Query: 357 ---GKRCGFVQYANRPSAE 404 K GFV + A+ Sbjct: 227 SGKSKGFGFVSFERHEDAQ 245 Score = 45.8 bits (107), Expect = 8e-05 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANRKTTGV 188 +V D +T RS GY +V F P + RA+ MN +P+RI P+ + G Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG- 99 Query: 189 QERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV---- 356 IF+ LD ++ AL F+ +G ++ K+ Sbjct: 100 -----------------------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 357 GKRCGFVQYANRPSAE 404 K GFV + + +AE Sbjct: 137 SKGYGFVHFETQEAAE 152 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/58 (36%), Positives = 36/58 (62%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 + ++ AKV+ + RSKG+GFV F P E +A+TEMNG +++P+ + A ++ Sbjct: 317 FGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 419 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 420 XXXXXXXXXNVRLSWG-RSPSNKQT 491 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.7 bits (117), Expect = 6e-06 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 KV+TD+ + +SKG+GFV F + +A+ EMNG + + + +G A + V+ + Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK----VERQTE 275 Query: 204 IPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRC 368 + Q Q ++V LD + ++ L++ F+P+G + K+ + K Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335 Query: 369 GFVQYANRPSA 401 GFV +++ A Sbjct: 336 GFVCFSSPEEA 346 Score = 47.0 bits (110), Expect = 4e-05 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D+ SKGYGFV F RA+ +MNGM + R + +G +RK Sbjct: 122 FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 + GA++ T +++ ++ ++ LK +F +G + VK+ Sbjct: 180 EAE----------LGARA---KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226 Query: 357 ---GKRCGFVQYANRPSAE 404 K GFV + A+ Sbjct: 227 SGKSKGFGFVSFERHEDAQ 245 Score = 45.8 bits (107), Expect = 8e-05 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANRKTTGV 188 +V D +T RS GY +V F P + RA+ MN +P+RI P+ + G Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG- 99 Query: 189 QERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV---- 356 IF+ LD ++ AL F+ +G ++ K+ Sbjct: 100 -----------------------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 357 GKRCGFVQYANRPSAE 404 K GFV + + +AE Sbjct: 137 SKGYGFVHFETQEAAE 152 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/58 (36%), Positives = 36/58 (62%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 + ++ AKV+ + RSKG+GFV F P E +A+TEMNG +++P+ + A ++ Sbjct: 317 FGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 419 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 420 XXXXXXXXXNVRLSWG-RSPSNKQT 491 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 49.7 bits (117), Expect = 6e-06 Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 KV+TD+ + +SKG+GFV F + +A+ EMNG + + + +G A + V+ + Sbjct: 221 KVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK----VERQTE 275 Query: 204 IPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRC 368 + Q Q ++V LD + ++ L++ F+P+G + K+ + K Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 335 Query: 369 GFVQYANRPSA 401 GFV +++ A Sbjct: 336 GFVCFSSPEEA 346 Score = 47.0 bits (110), Expect = 4e-05 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D+ SKGYGFV F RA+ +MNGM + R + +G +RK Sbjct: 122 FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 + GA++ T +++ ++ ++ LK +F +G + VK+ Sbjct: 180 EAE----------LGARA---KEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226 Query: 357 ---GKRCGFVQYANRPSAE 404 K GFV + A+ Sbjct: 227 SGKSKGFGFVSFERHEDAQ 245 Score = 45.8 bits (107), Expect = 8e-05 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANRKTTGV 188 +V D +T RS GY +V F P + RA+ MN +P+RI P+ + G Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG- 99 Query: 189 QERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV---- 356 IF+ LD ++ AL F+ +G ++ K+ Sbjct: 100 -----------------------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 357 GKRCGFVQYANRPSAE 404 K GFV + + +AE Sbjct: 137 SKGYGFVHFETQEAAE 152 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/58 (36%), Positives = 36/58 (62%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 + ++ AKV+ + RSKG+GFV F P E +A+TEMNG +++P+ + A ++ Sbjct: 317 FGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 419 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 420 XXXXXXXXXNVRLSWG-RSPSNKQT 491 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 49.7 bits (117), Expect = 6e-06 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 5/138 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y KV+TD +SKG+GFV F + +A+ EMNG + + M +G A + Sbjct: 214 YGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK--- 269 Query: 183 GVQERVPIPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV- 356 V+ + + Q Q ++V LD + ++ L++ F P+G + K+ + Sbjct: 270 -VERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME 328 Query: 357 ---GKRCGFVQYANRPSA 401 K GFV +++ A Sbjct: 329 GGRSKGFGFVCFSSPEEA 346 Score = 49.7 bits (117), Expect = 6e-06 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D+ SKGYGFV F RA+ +MNGM + R + +G +RK Sbjct: 122 FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 + GA++ T +++ ++ ++ LK++F YG + VK+ Sbjct: 180 EAE----------LGARA---KEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226 Query: 357 ---GKRCGFVQYANRPSAE 404 K GFV + A+ Sbjct: 227 NGKSKGFGFVSFERHEDAQ 245 Score = 47.0 bits (110), Expect = 4e-05 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANRKTTGV 188 +V D +T RS GY +V F P + RA+ MN RP+RI P+ + G Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVG- 99 Query: 189 QERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV---- 356 IF+ LD ++ AL F+ +G ++ K+ Sbjct: 100 -----------------------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 357 GKRCGFVQYANRPSAE 404 K GFV + + +AE Sbjct: 137 SKGYGFVHFETQEAAE 152 Score = 43.1 bits (100), Expect = 5e-04 Identities = 26/83 (31%), Positives = 44/83 (53%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ AKV+ + RSKG+GFV F P E +A+TEMNG +++P+ + A ++ Sbjct: 317 FGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE-- 372 Query: 183 GVQERVPIPNTNTQGAQSDNDPN 251 + + + N Q S PN Sbjct: 373 --ERQAHLTNQYMQRMASVRVPN 393
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 49.7 bits (117), Expect = 6e-06 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 19/179 (10%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI--GPAANRKTT 182 +V+ +V+ DK++ RS+G+GFV E A + NG R +R+ GPA ++ Sbjct: 113 NVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKREN 172 Query: 183 GVQERVPIPNTNTQGAQSDND-----------PNNTTIFVGGLDPNVTEDALKQVFAPYG 329 N++ G + N ++ ++VG L V + ALK++F+ G Sbjct: 173 SSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQG 232 Query: 330 EVVHVKIPV------GKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQ 488 VV K+ + GFV Y++ ++R+S +Q Sbjct: 233 NVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQ 291
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 49.7 bits (117), Expect = 6e-06 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM---PCSSRPMRIGPAANRKTTGVQER 197 VV DK T SKG FVKF ++ RAM EM+G P ++P+++ A +R Sbjct: 56 VVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIKVFIAQSR-------- 107 Query: 198 VPIPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 + G+ D D T IFV + + TE+ L++ F YG++ + I K G Sbjct: 108 -------SSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTG 158 Score = 35.8 bits (81), Expect = 0.088 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +3 Query: 297 DALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSP 476 D L+ +F +G ++ V + GK G+V+YA+R SA +++ SP Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYVKYADRKSANEAITTLHGKILNGVRLKVMLADSP 465 Query: 477 SNKQTQPQ 500 + + Q Sbjct: 466 REESKKRQ 473 Score = 30.0 bits (66), Expect = 4.8 Identities = 11/36 (30%), Positives = 24/36 (66%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 110 Y ++ ++ +K+T SKG G+V++ P++ A+A+ Sbjct: 143 YGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 49.3 bits (116), Expect = 8e-06 Identities = 23/57 (40%), Positives = 35/57 (61%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + V AKV+ D+ T RS+G+GFV F D A++EM+G + R +R+ PA +R Sbjct: 58 FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114 Score = 33.5 bits (75), Expect = 0.44 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +3 Query: 252 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 +T +F+GGL + +L+ FA +G+VV K+ V + G Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG 73
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 49.3 bits (116), Expect = 8e-06 Identities = 30/116 (25%), Positives = 52/116 (44%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + K + DK T + KGYGFV F P+ +A+T + K + Sbjct: 81 YGKIVSTKAILDKTTNKCKGYGFVDFDSPSSAQKAVTAL------------------KAS 122 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 GVQ ++ Q + DP N +++ L ++ E L+ + P+G+V+ +I Sbjct: 123 GVQAQM--------AKQQEQDPTN--LYISNLPLSMDEQELEGMLKPFGQVISTRI 168
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 49.3 bits (116), Expect = 8e-06 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + +++ D T S GYGFV FG + RA+ +NG+ ++ +++ A + G Q Sbjct: 104 INTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFA---RPGGEQ 160 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 R +T ++V L ++T++ L+ +F YG++V I K G Sbjct: 161 LR------------------DTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTG 202 Query: 372 ------FVQYANRPSAE 404 F+++ R A+ Sbjct: 203 TPRGVAFIRFNKREEAQ 219
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 48.9 bits (115), Expect = 1e-05 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM---PCSSRPMRIGPAANRKTTGVQER 197 VV DK T SKG FVKF ++ RAM EM+G P ++P+++ A +R Sbjct: 56 VVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSR-------- 107 Query: 198 VPIPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 + G+ D D T IFV + + TE+ L++ F YG++ + I K G Sbjct: 108 -------SSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTG 158 Score = 30.0 bits (66), Expect = 4.8 Identities = 11/36 (30%), Positives = 24/36 (66%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 110 Y ++ ++ +K+T SKG G+V++ P++ A+A+ Sbjct: 143 YGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAI 178
>NELFE_DROME (P92204) Negative elongation factor E| Length = 280 Score = 48.9 bits (115), Expect = 1e-05 Identities = 29/79 (36%), Positives = 44/79 (55%) Frame = +3 Query: 168 NRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 +R+ G+ E+VP+ + ++ N TIFV G VTED LK+ F YG +V+V Sbjct: 142 DREERGMPEKVPMDTAQPEKPRAGN-----TIFVSG--NKVTEDFLKKTFNDYGTIVNVS 194 Query: 348 IPVGKRCGFVQYANRPSAE 404 + + K GFV +A SA+ Sbjct: 195 MEIEKSRGFVSFAKPESAD 213
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 48.9 bits (115), Expect = 1e-05 Identities = 30/116 (25%), Positives = 52/116 (44%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + K + DK T + KGYGFV F P+ +A+T + K + Sbjct: 79 YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL------------------KAS 120 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 GVQ ++ Q + DP N +++ L ++ E L+ + P+G+V+ +I Sbjct: 121 GVQAQM--------AKQQEQDPTN--LYISNLPLSMDEQELEGMLKPFGQVISTRI 166
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D SKGY +V F RA+ MNG+ ++R + +G Sbjct: 129 FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-------- 178 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---- 350 R P ++ + T +FV + ++ ++ LK++F YG VK+ Sbjct: 179 ----RFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA 234 Query: 351 -PVGKRCGFVQYANRPSAE 404 K GFV+Y +A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQ 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + KV+ D + +SKG+GFV++ +A+ +++G + + +G A + Sbjct: 222 YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--PV 356 + R + + P I++ LD + ++ LK+ F+ +G + K+ V Sbjct: 281 LAELRRRFERLR---LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV 337 Query: 357 GKRCGF 374 G+ GF Sbjct: 338 GQGKGF 343 Score = 33.9 bits (76), Expect = 0.33 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI---GPAANRKTTGVQE 194 ++ D +T GYG+V F P + A+ MN + +P R+ P + +GV Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGV-- 105 Query: 195 RVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IF+ LD ++ AL +F+ +G ++ K+ Sbjct: 106 --------------------GNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137 Score = 32.3 bits (72), Expect = 0.97 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + S+ AKV+ + + KG+G V F E +A+ EMNG S+P+ + Sbjct: 325 FGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 32.3 bits (72), Expect = 0.97 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 416 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 417 XXXXXXXXXXNVRLSWGR 470 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D SKGY +V F RA+ MNG+ ++R + +G Sbjct: 129 FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-------- 178 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---- 350 R P ++ + T +FV + ++ ++ LK++F YG VK+ Sbjct: 179 ----RFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA 234 Query: 351 -PVGKRCGFVQYANRPSAE 404 K GFV+Y +A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQ 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + KV+ D + +SKG+GFV++ +A+ +++G + + +G A + Sbjct: 222 YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--PV 356 + R + + P I++ LD + ++ LK+ F+ +G + K+ V Sbjct: 281 LAELRRRFERLR---LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV 337 Query: 357 GKRCGF 374 G+ GF Sbjct: 338 GQGKGF 343 Score = 33.9 bits (76), Expect = 0.33 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI---GPAANRKTTGVQE 194 ++ D +T GYG+V F P + A+ MN + +P R+ P + +GV Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGV-- 105 Query: 195 RVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IF+ LD ++ AL +F+ +G ++ K+ Sbjct: 106 --------------------GNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137 Score = 32.3 bits (72), Expect = 0.97 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + S+ AKV+ + + KG+G V F E +A+ EMNG S+P+ + Sbjct: 325 FGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 32.3 bits (72), Expect = 0.97 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 416 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 417 XXXXXXXXXXNVRLSWGR 470 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D SKGY +V F RA+ MNG+ ++R + +G Sbjct: 129 FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-------- 178 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---- 350 R P ++ + T +FV + ++ ++ LK++F YG VK+ Sbjct: 179 ----RFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA 234 Query: 351 -PVGKRCGFVQYANRPSAE 404 K GFV+Y +A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQ 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + KV+ D + +SKG+GFV++ +A+ +++G + + +G A + Sbjct: 222 YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--PV 356 + R + + P I++ LD + ++ LK+ F+ +G + K+ V Sbjct: 281 LAELRRRFERLR---LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV 337 Query: 357 GKRCGF 374 G+ GF Sbjct: 338 GQGKGF 343 Score = 33.9 bits (76), Expect = 0.33 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI---GPAANRKTTGVQE 194 ++ D +T GYG+V F P + A+ MN + +P R+ P + +GV Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGV-- 105 Query: 195 RVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IF+ LD ++ AL +F+ +G ++ K+ Sbjct: 106 --------------------GNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137 Score = 32.7 bits (73), Expect = 0.74 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + S+ AKV+ + + KG+G V F E +A+ EMNG S+P+ + Sbjct: 325 FGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHV 373 Score = 32.3 bits (72), Expect = 0.97 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 416 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 417 XXXXXXXXXXNVRLSWGR 470 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D SKGY +V F RA+ MNG+ ++R + +G Sbjct: 129 FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-------- 178 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---- 350 R P ++ + T +FV + ++ ++ LK++F YG VK+ Sbjct: 179 ----RFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA 234 Query: 351 -PVGKRCGFVQYANRPSAE 404 K GFV+Y +A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQ 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + KV+ D + +SKG+GFV++ +A+ +++G + + +G A + Sbjct: 222 YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--PV 356 + R + + P I++ LD + ++ LK+ F+ +G + K+ V Sbjct: 281 LAELRRRFERLR---LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV 337 Query: 357 GKRCGF 374 G+ GF Sbjct: 338 GQGKGF 343 Score = 33.9 bits (76), Expect = 0.33 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI---GPAANRKTTGVQE 194 ++ D +T GYG+V F P + A+ MN + +P R+ P + +GV Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGV-- 105 Query: 195 RVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IF+ LD ++ AL +F+ +G ++ K+ Sbjct: 106 --------------------GNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137 Score = 32.3 bits (72), Expect = 0.97 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + S+ AKV+ + + KG+G V F E +A+ EMNG S+P+ + Sbjct: 325 FGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 32.3 bits (72), Expect = 0.97 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 416 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 417 XXXXXXXXXXNVRLSWGR 470 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D SKGY +V F RA+ MNG+ ++R + +G Sbjct: 129 FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-------- 178 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---- 350 R P ++ + T +FV + ++ ++ LK++F YG VK+ Sbjct: 179 ----RFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA 234 Query: 351 -PVGKRCGFVQYANRPSAE 404 K GFV+Y +A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQ 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + KV+ D + +SKG+GFV++ +A+ +++G + + +G A + Sbjct: 222 YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--PV 356 + R + + P I++ LD + ++ LK+ F+ +G + K+ V Sbjct: 281 LAELRRRFERLR---LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV 337 Query: 357 GKRCGF 374 G+ GF Sbjct: 338 GQGKGF 343 Score = 33.9 bits (76), Expect = 0.33 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI---GPAANRKTTGVQE 194 ++ D +T GYG+V F P + A+ MN + +P R+ P + +GV Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGV-- 105 Query: 195 RVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IF+ LD ++ AL +F+ +G ++ K+ Sbjct: 106 --------------------GNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137 Score = 32.3 bits (72), Expect = 0.97 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + S+ AKV+ + + KG+G V F E +A+ EMNG S+P+ + Sbjct: 325 FGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 32.3 bits (72), Expect = 0.97 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 416 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 417 XXXXXXXXXXNVRLSWGR 470 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D SKGY +V F RA+ MNG+ ++R + +G Sbjct: 129 FGNILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-------- 178 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---- 350 R P ++ + T +FV + ++ ++ LK++F YG VK+ Sbjct: 179 ----RFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA 234 Query: 351 -PVGKRCGFVQYANRPSAE 404 K GFV+Y +A+ Sbjct: 235 SGKSKGFGFVRYETHEAAQ 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + KV+ D + +SKG+GFV++ +A+ +++G + + +G A + Sbjct: 222 YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--PV 356 + R + + P I++ LD + ++ LK+ F+ +G + K+ V Sbjct: 281 LAELRRRFERLR---LKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV 337 Query: 357 GKRCGF 374 G+ GF Sbjct: 338 GQGKGF 343 Score = 33.9 bits (76), Expect = 0.33 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI---GPAANRKTTGVQE 194 ++ D +T GYG+V F P + A+ MN + +P R+ P + +GV Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGV-- 105 Query: 195 RVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 IF+ LD ++ AL +F+ +G ++ K+ Sbjct: 106 --------------------GNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137 Score = 32.3 bits (72), Expect = 0.97 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + S+ AKV+ + + KG+G V F E +A+ EMNG S+P+ + Sbjct: 325 FGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373 Score = 32.3 bits (72), Expect = 0.97 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI--------PVGKRCGFVQYANRPSAEXXXX 416 ++VG LDP+VTED L + F P G + +I P+G G+V + AE Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG--YGYVNFRFPADAEWALN 77 Query: 417 XXXXXXXXXXNVRLSWGR 470 RL W + Sbjct: 78 TMNFDLINGKPFRLMWSQ 95
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 48.5 bits (114), Expect = 1e-05 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 4/119 (3%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM---PCSSRPMRIGPAANRKTTGVQER 197 VV DK T SKG FVKF ++ RAM EM+G P ++P+++ A +R Sbjct: 56 VVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSR-------- 107 Query: 198 VPIPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 + G+ D D T IFV + + TE+ L++ F YG++ + + K G Sbjct: 108 -------SSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTG 158 Score = 37.4 bits (85), Expect = 0.030 Identities = 22/91 (24%), Positives = 43/91 (47%) Frame = +3 Query: 129 PCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALK 308 P + ++ G +A + +Q V +P+ + P +F+ + D L+ Sbjct: 352 PSHQQFLQFGGSAGSQVPQIQTDVVLPSCRKKAPPET--PVKERLFIVFNPHPLPLDVLE 409 Query: 309 QVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 401 +F +G ++ V + GK G+V+YA+R SA Sbjct: 410 DIFCRFGNLIEVYLVSGKNVGYVKYADRMSA 440 Score = 30.4 bits (67), Expect = 3.7 Identities = 12/36 (33%), Positives = 24/36 (66%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAM 110 Y ++ V+ +K+T SKG G+V++ P++ A+A+ Sbjct: 143 YGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAI 178
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 48.1 bits (113), Expect = 2e-05 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTE---MNGMPCSSRPMRIGPAANRKTTGVQE 194 +V D T SKG+GFV+F + Q + M++ ++G C + Sbjct: 134 QVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK----------------- 176 Query: 195 RVPIPNTNTQGAQSDNDP-NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC- 368 +PN+ QS ++P + +FVG ++TED L++ F+ YG+V+ V IP R Sbjct: 177 ---LPNSK----QSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAF 229 Query: 369 GFVQYANRPSAE 404 FV +A+ A+ Sbjct: 230 AFVTFADDQIAQ 241
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 48.1 bits (113), Expect = 2e-05 Identities = 29/137 (21%), Positives = 63/137 (45%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V+ AK++ DK+ S GYGFV + + RA++ +NG+ S+ +++ A Sbjct: 46 VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA--------- 96 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 S + +++ GL +T+ ++ +F+ +G +++ ++ V + G Sbjct: 97 ------------RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTG 144 Query: 372 ------FVQYANRPSAE 404 F+++ R AE Sbjct: 145 LSRGVAFIRFDKRSEAE 161 Score = 40.8 bits (94), Expect = 0.003 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 31/141 (21%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM--PCSSRPMRIGPAAN---RKTTG 185 ++V+ D+ T S+G F++F +E A+T G P SS P+ + AAN K Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFAANPNQNKNMA 194 Query: 186 VQERV----------------------PIPNTNTQGAQSDNDPNNTT----IFVGGLDPN 287 + ++ P+ + G N P N + IF+ L + Sbjct: 195 LLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLGQD 254 Query: 288 VTEDALKQVFAPYGEVVHVKI 350 E L Q+F P+G V +VK+ Sbjct: 255 ADEGILWQMFGPFGAVTNVKV 275 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V KV+ D T + KG+GFV + E A A+ +NG + +++ N+ Sbjct: 267 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVSFKTNK 323 Score = 33.9 bits (76), Expect = 0.33 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAE 404 D T + V L N+T++ L+ +F+ GEV K+ K GFV Y AE Sbjct: 16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 Query: 405 XXXXXXXXXXXXXXNVRLSWGRSPS 479 +++S+ R S Sbjct: 76 RAISTLNGLRLQSKTIKVSYARPSS 100
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 48.1 bits (113), Expect = 2e-05 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D+ SKGY FV F +A+ +MNGM + R + +G +RK Sbjct: 122 FGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---P 353 + GA++ T +++ V +++LK++F+ +G+ + VK+ P Sbjct: 180 EAE----------LGAKA---KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226 Query: 354 VGKR--CGFVQYANRPSA 401 GK GFV Y A Sbjct: 227 NGKSKGFGFVSYEKHEDA 244 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 +SKG+GFV + + +A+ EMNG S + + +G A + V+ + + Q Sbjct: 229 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK----VERQAELKRKFEQLK 284 Query: 231 QSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGFVQYANRP 395 Q + +++ LD + ++ L++ F+P+G + K+ + K GFV +++ Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPE 344 Query: 396 SA 401 A Sbjct: 345 EA 346 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/58 (39%), Positives = 35/58 (60%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 + S+ AKV+ + RSKG+GFV F P E +A+TEMNG S+P+ + A ++ Sbjct: 317 FGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKE 372 Score = 42.4 bits (98), Expect = 0.001 Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 9/140 (6%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANRK 176 V +V D +T RS GY +V F P + RA+ MN +P+RI P+ + Sbjct: 37 VLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKS 96 Query: 177 TTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV 356 G +F+ LD ++ AL F+ +G ++ K+ Sbjct: 97 GVG------------------------NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 132 Query: 357 ----GKRCGFVQYANRPSAE 404 K FV + + +A+ Sbjct: 133 DENGSKGYAFVHFETQEAAD 152
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/59 (38%), Positives = 31/59 (52%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 ++ D T RSKGYGF+ F D RA+ ++NG + RPMR+G R G P Sbjct: 294 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFP 352 Score = 38.9 bits (89), Expect = 0.010 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V+ ++++D+ + RSKG +V+F + S P+ IG R GV Sbjct: 192 VRDVRIISDRNSRRSKGIAYVEFCE---------------IQSVPLAIGLTGQR-LLGVP 235 Query: 192 ERVPIPNT--NTQGAQSDN----DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV 344 V N A ++N + ++VG L N+TED L+ +F P+G++ ++ Sbjct: 236 IIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNI 292
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 47.8 bits (112), Expect = 2e-05 Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V+ AK++ DK+ S GYGFV + + RA+ +NG+ S+ +++ A Sbjct: 46 VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA--------- 96 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 S + +++ GL +T+ ++ +F+ +G +++ ++ V + G Sbjct: 97 ------------RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTG 144 Query: 372 ------FVQYANRPSAE 404 F+++ R AE Sbjct: 145 LSRGVAFIRFDKRSEAE 161 Score = 44.7 bits (104), Expect = 2e-04 Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 31/141 (21%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG--MPCSSRPMRIGPAAN---RKTTG 185 ++V+ D+ T S+G F++F +E A+T NG P SS P+ + AAN K Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVA 194 Query: 186 VQERV----------------------PIPNTNTQGAQSDNDPNNTT----IFVGGLDPN 287 + ++ P+ + G N P N + IF+ L + Sbjct: 195 LLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQD 254 Query: 288 VTEDALKQVFAPYGEVVHVKI 350 E L Q+F P+G V +VK+ Sbjct: 255 ADEGILWQMFGPFGAVTNVKV 275 Score = 35.0 bits (79), Expect = 0.15 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAE 404 D T + V L N+T+D L+ +F+ GEV K+ K GFV Y AE Sbjct: 16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 Query: 405 XXXXXXXXXXXXXXNVRLSWGRSPS 479 +++S+ R S Sbjct: 76 RAINTLNGLRLQSKTIKVSYARPSS 100 Score = 33.5 bits (75), Expect = 0.44 Identities = 16/57 (28%), Positives = 29/57 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V KV+ D T + KG+GFV + E A A+ +NG + +++ N+ Sbjct: 267 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
>SLT11_EMENI (Q5AX35) Pre-mRNA-splicing factor slt11| Length = 385 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Frame = +3 Query: 135 SSRPMRIGPAANRKTTGVQERVPIPNT-NTQGAQSD----NDPNNTTIFVGGLDPNVTED 299 +S R P R GV+ P P T +Q+D DPN T++FV G++ ++ E Sbjct: 192 TSESRRGTPLPGRGRGGVRGGRPFPGTAQLPPSQADILPPADPNITSLFVTGVEDDLPEH 251 Query: 300 ALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 AL+ F +G++ + C F+ YA R SAE Sbjct: 252 ALRSFFVQFGQLRSLVCSHRAHCAFINYAARESAE 286
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 47.8 bits (112), Expect = 2e-05 Identities = 29/116 (25%), Positives = 51/116 (43%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + K + DK T + KGYGFV F P +A++ + K + Sbjct: 85 YGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSAL------------------KAS 126 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 GVQ ++ Q + DP N +++ L ++ E L+ + P+G+V+ +I Sbjct: 127 GVQAQM--------AKQQEQDPTN--LYISNLPLSMDEQELENMLKPFGQVISTRI 172
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 47.4 bits (111), Expect = 3e-05 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ D T RS+G+GFV F TE AM + RP I + KT + VP Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ--------RPHII----DGKTVDPKRAVPR 101 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------ 368 + N +S+++ + ++V G+ + TED L + F YG V +I + K Sbjct: 102 DDKN----RSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGF 157 Query: 369 GFVQYANRPSAE 404 GFV + + S + Sbjct: 158 GFVTFDDHDSVD 169 Score = 39.3 bits (90), Expect = 0.008 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%) Frame = +3 Query: 198 VPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC 368 V I N G S N IFVGGL N T+D +++ ++ +GE+ + + P KR Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRS 63 Query: 369 ---GFVQYANRPSAE 404 GFV ++ + + Sbjct: 64 RGFGFVTFSGKTEVD 78
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 47.0 bits (110), Expect = 4e-05 Identities = 28/116 (24%), Positives = 50/116 (43%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + K + DK T + KGYGFV F P +A++ + K Sbjct: 85 YGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSAL------------------KAN 126 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 GVQ ++ Q + DP N +++ L ++ E L+ + P+G+V+ ++ Sbjct: 127 GVQAQM--------AKQQEQDPTN--LYISNLPLSMDEQELENMLKPFGQVISTRV 172 Score = 38.1 bits (87), Expect = 0.018 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 13/81 (16%) Frame = +3 Query: 201 PIPNTNTQGAQSDNDPNN-------TTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG 359 P P+T + S + N+ T +++ GL PN T+ L ++ PYG++V K + Sbjct: 37 PSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILD 96 Query: 360 K---RC---GFVQYANRPSAE 404 K +C GFV + + +A+ Sbjct: 97 KATNKCKGYGFVDFDSPAAAQ 117
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 47.0 bits (110), Expect = 4e-05 Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 5/138 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + KV+TD +S+G+GFV F + +A+ +MNG + + + +G A + Sbjct: 214 YGAALSVKVMTDDHG-KSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK--- 269 Query: 183 GVQERVPIPNTNTQGAQSD-NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV- 356 V+ + + Q Q ++V LD + ++ L++ F P+G + K+ + Sbjct: 270 -VERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME 328 Query: 357 ---GKRCGFVQYANRPSA 401 K GFV +++ A Sbjct: 329 GGRSKGFGFVCFSSPEEA 346 Score = 46.6 bits (109), Expect = 5e-05 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 3/127 (2%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KVV D+ SKGYGFV F RA+ +MNGM + R + +G +RK Sbjct: 122 FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 + GA++ T +++ ++ ++ LK+ F YG + VK+ Sbjct: 180 EAE----------LGARA---KEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226 Query: 357 -GKRCGF 374 GK GF Sbjct: 227 HGKSRGF 233 Score = 45.8 bits (107), Expect = 8e-05 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 9/136 (6%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANRKTTGV 188 +V D +T RS GY +V F P + RA+ MN +P+RI P+ + G Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVG- 99 Query: 189 QERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV---- 356 IF+ LD ++ AL F+ +G ++ K+ Sbjct: 100 -----------------------NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136 Query: 357 GKRCGFVQYANRPSAE 404 K GFV + + +AE Sbjct: 137 SKGYGFVHFETQEAAE 152 Score = 44.3 bits (103), Expect = 2e-04 Identities = 27/83 (32%), Positives = 44/83 (53%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + S+ AKV+ + RSKG+GFV F P E +A+TEMNG +++P+ + A ++ Sbjct: 317 FGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE-- 372 Query: 183 GVQERVPIPNTNTQGAQSDNDPN 251 + + + N Q S PN Sbjct: 373 --ERQAHLTNQYMQRMASVRVPN 393 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSAEXXXXX 419 +++VG L P+VTE L + F+P G ++ +++ + +R +V + AE Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 420 XXXXXXXXXNVRLSWG-RSPSNKQT 491 VR+ W R PS +++ Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKS 96
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 46.6 bits (109), Expect = 5e-05 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 ++ +++ D T RSKGYGF+ F D +A+ ++NG + RPM++G R Sbjct: 276 IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V+ ++++D+ + RS+G +V+F D R + G P+ + + K Sbjct: 179 VRDVRMISDRNSRRSRGIAYVEFVD-VSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAAA 237 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----- 356 + N +G+ ++VG L N+TED L+ +F P+G + +++ + Sbjct: 238 ----MANNLQKGSAGP-----MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETG 288 Query: 357 -GKRCGFVQYANRPSAE 404 K GF+ +++ A+ Sbjct: 289 RSKGYGFITFSDSECAK 305
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 46.6 bits (109), Expect = 5e-05 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 ++ +++ D T RSKGYGF+ F D +A+ ++NG + RPM++G R Sbjct: 276 IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329 Score = 44.3 bits (103), Expect = 2e-04 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 12/143 (8%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V+ ++++D+ + RSKG +V+F D SS P+ IG R GV Sbjct: 179 VRDVRMISDRNSRRSKGIAYVEFVD---------------VSSVPLAIGLTGQR-VLGVP 222 Query: 192 ERVPIPNT--NTQGAQSDNDPNNTT----IFVGGLDPNVTEDALKQVFAPYGEVVHVKIP 353 V N A ++N + ++VG L N+TED L+ +F P+G + +++ Sbjct: 223 IIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282 Query: 354 V------GKRCGFVQYANRPSAE 404 + K GF+ +++ A+ Sbjct: 283 MDSETGRSKGYGFITFSDSECAK 305
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 46.6 bits (109), Expect = 5e-05 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 5/138 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + + +K+ TD+ +SKG+GFV F + A+ +NGM + + + + P +RK Sbjct: 148 FGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKER 206 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG- 359 Q + + T ++V ++ T++ +++FA +G +V + Sbjct: 207 DSQ-------------LEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA 253 Query: 360 ----KRCGFVQYANRPSA 401 K GFV Y A Sbjct: 254 DGKLKGFGFVNYEKHEDA 271 Score = 44.3 bits (103), Expect = 2e-04 Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 10/142 (7%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANR 173 SV +V D +T S GY +V F D +A+ ++N P R RI P+ + Sbjct: 62 SVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK 121 Query: 174 KTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP 353 K +G IF+ L P++ AL F+ +G+++ KI Sbjct: 122 KGSG------------------------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIA 157 Query: 354 V-----GKRCGFVQYANRPSAE 404 K GFV + +A+ Sbjct: 158 TDENGKSKGFGFVHFEEEGAAK 179 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 5/111 (4%) Frame = +3 Query: 57 KGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQS 236 KG+GFV + + +A+ +N + + +G A + ER+ + + + Sbjct: 258 KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKN-----ERMHVLKKQYEAYRL 312 Query: 237 DNDPN--NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRCGF 374 + +FV LD +V ++ L++ FAPYG + K+ GK GF Sbjct: 313 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGF 363 Score = 37.4 bits (85), Expect = 0.030 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 Y ++ AKV+ + +SKG+GFV F P E +A+TE N + +P+ + A + Sbjct: 344 YGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 399 Score = 33.5 bits (75), Expect = 0.44 Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Frame = +3 Query: 174 KTTGVQERVPIPNTNTQ---GAQSDNDPNNT-TIFVGGLDPNVTEDALKQVFAPYGEVVH 341 KT E + I + Q G++S + N++ +++VG L+P+V+E L +F+P G V Sbjct: 6 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSS 65 Query: 342 VKI 350 +++ Sbjct: 66 IRV 68
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 46.6 bits (109), Expect = 5e-05 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 5/132 (3%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTE---MNGMPCSSRPMRIGPAANRKTTGVQE 194 +V D T SKG+GFV+F + Q + M++ ++G C + Sbjct: 134 QVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK----------------- 176 Query: 195 RVPIPNTNTQGAQSDNDP-NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC- 368 +PN+ QS ++P + +FVG ++T + L+Q F YGEVV V IP R Sbjct: 177 ---LPNSK----QSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAF 229 Query: 369 GFVQYANRPSAE 404 FV +A+ A+ Sbjct: 230 AFVTFADDKVAQ 241
>NELFE_DROVI (Q95ZE9) Negative elongation factor E| Length = 281 Score = 46.2 bits (108), Expect = 6e-05 Identities = 28/78 (35%), Positives = 43/78 (55%) Frame = +3 Query: 171 RKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 R+ G+ E+V + T + ++ N TIFV G VTE+ LK+ F YG +V+V + Sbjct: 144 REERGLTEKVTLDTTQPEKPRAGN-----TIFVSG--NKVTEEFLKKTFNDYGTIVNVSM 196 Query: 351 PVGKRCGFVQYANRPSAE 404 + K GFV +A SA+ Sbjct: 197 EIEKSRGFVSFAKPESAD 214
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 46.2 bits (108), Expect = 6e-05 Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 4/120 (3%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ D T RS+G+GF+ + RA +RP I + KT + +P Sbjct: 63 VMRDAATKRSRGFGFITYTKSLMVDRAQ--------ENRPHII----DGKTVEAKRALPR 110 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRCGF 374 P ++ + + + +FVGGL N E+ L++ F +G VV VK+ GKR GF Sbjct: 111 PERESR----ETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGF 166 Score = 31.2 bits (69), Expect = 2.2 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 +F+GGL P TE+ LK + +G+VV V + Sbjct: 34 LFIGGLAPYTTEENLKLFYGQWGKVVDVVV 63
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 46.2 bits (108), Expect = 6e-05 Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 8/134 (5%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT--- 182 VK VVT+K + +G+G+V F + RA+ E+ + + R T Sbjct: 29 VKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEK 88 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---P 353 G E P + ++ + + L +ED LK VFA +G V+ V I P Sbjct: 89 GKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKP 148 Query: 354 VGKR--CGFVQYAN 389 GK GFVQ+ N Sbjct: 149 DGKMRGFGFVQFKN 162 Score = 30.8 bits (68), Expect = 2.8 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Frame = +3 Query: 162 AANRKTTGVQERVPIPNTNTQGAQSDNDPNN-TTIFVGGLDPNVTEDALKQVFAPYGEVV 338 A + +T QE + +N + + +D N T+F+ L + E+ L ++ +GE+ Sbjct: 302 AQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGELK 361 Query: 339 HVKIPV------GKRCGFVQYANRPSAE 404 +V+I + K C F Q+ + +A+ Sbjct: 362 YVRIVLHPDTEHSKGCAFAQFMTQEAAQ 389
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 45.8 bits (107), Expect = 8e-05 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 5/130 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKT 179 + V + D T RS+G+GF+ F D + + + + + R+ G + K Sbjct: 98 FGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ--------KEHRLDGRVIDPKK 149 Query: 180 TGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV- 356 ++ P+ IFVGGL+P TE+ +++ F +GE+ +++P+ Sbjct: 150 AMAMKKDPVKK----------------IFVGGLNPEATEEKIREYFGQFGEIEAIELPID 193 Query: 357 ---GKRCGFV 377 KR GFV Sbjct: 194 PKLNKRRGFV 203 Score = 36.2 bits (82), Expect = 0.067 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 12/117 (10%) Frame = +3 Query: 90 TEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSD------NDPN 251 TE P PAA+ + G P N N GA+ D N+ + Sbjct: 16 TENGHEAAPEGEAPVEPSAAAAAPAASAGSGGGTTTAPSGNQN--GAEGDQINASKNEED 73 Query: 252 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV------GKRCGFVQYANRPSAE 404 +FVGGL + ++ LK F +GEVV I + + GF+ + + S E Sbjct: 74 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 45.4 bits (106), Expect = 1e-04 Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 66/195 (33%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK-- 176 Y SVK K++T++ T SKGYGFV F + + + + + + +++GPA ++ Sbjct: 228 YGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ--IHFHGKKLKLGPAIRKQKL 284 Query: 177 -TTGVQERVPI---------------PNTNT---------------QGAQSDNDPNNT-- 257 VQ R + PNT T Q A + PN+T Sbjct: 285 CARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTIS 344 Query: 258 --------------------------TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--- 350 T+FVGG+D + E + F YG V VKI Sbjct: 345 REASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITN 404 Query: 351 --PVGKRCGFVQYAN 389 V K GFV + N Sbjct: 405 RTGVSKGYGFVSFVN 419 Score = 45.4 bits (106), Expect = 1e-04 Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 66/195 (33%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK-- 176 Y SVK K++T++ T SKGYGFV F + + + + + + +++GPA ++ Sbjct: 63 YGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ--IHFHGKKLKLGPAIRKQKL 119 Query: 177 -TTGVQERVPI---------------PNTNT---------------QGAQSDNDPNNT-- 257 VQ R + PNT T Q A + PN+T Sbjct: 120 CARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTIS 179 Query: 258 --------------------------TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--- 350 T+FVGG+D + E + F YG V VKI Sbjct: 180 REASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITN 239 Query: 351 --PVGKRCGFVQYAN 389 V K GFV + N Sbjct: 240 RTGVSKGYGFVSFVN 254 Score = 36.6 bits (83), Expect = 0.051 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 389 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 89 Score = 35.8 bits (81), Expect = 0.088 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK-- 176 Y SVK K++T++ T SKGYGFV F + + + + + + +++GPA ++ Sbjct: 393 YGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ--IHFHGKKLKLGPAIRKQKL 449 Query: 177 -TTGVQER--VPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 VQ R V P Q +PN T L P +T + + Q Y H Sbjct: 450 CARHVQPRPLVVNPPPPPQFQNVWRNPNTETY----LQPQITPNPVTQHVQAYSAYPHSP 505 Query: 348 IPVGKRCGFVQY 383 V C + Y Sbjct: 506 GQVITGCQLLVY 517
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 45.4 bits (106), Expect = 1e-04 Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 66/195 (33%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK-- 176 Y SVK K++T++ T SKGYGFV F + + + + + + +++GPA ++ Sbjct: 63 YGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ--IHFHGKKLKLGPAIRKQKL 119 Query: 177 -TTGVQERVPI---------------PNTNT---------------QGAQSDNDPNNT-- 257 VQ R + PNT T Q A + PN+T Sbjct: 120 CARHVQPRPLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHVQSAANPETPNSTIS 179 Query: 258 --------------------------TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--- 350 T+FVGG+D + E + F YG V VKI Sbjct: 180 REASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITN 239 Query: 351 --PVGKRCGFVQYAN 389 V K GFV + N Sbjct: 240 RTGVSKGYGFVSFVN 254 Score = 36.6 bits (83), Expect = 0.051 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 389 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 89 Score = 35.8 bits (81), Expect = 0.088 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK-- 176 Y SVK K++T++ T SKGYGFV F + + + + + + +++GPA ++ Sbjct: 228 YGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ--IHFHGKKLKLGPAIRKQKL 284 Query: 177 -TTGVQER--VPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 VQ R V P Q +PN T L P +T + + Q Y H Sbjct: 285 CARHVQPRPLVVNPPPPPQFQNVWRNPNTETY----LQPQITPNPVTQHVQAYSAYPHSP 340 Query: 348 IPVGKRCGFVQY 383 V C + Y Sbjct: 341 GQVITGCQLLVY 352
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 45.1 bits (105), Expect = 1e-04 Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 6/140 (4%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ V+ D T RS+G+GFV F DP + + + P + Sbjct: 44 FGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ--------------PHHELDSK 89 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 + +V P + AQ IFVGGL N + +KQ F +G+V + K Sbjct: 90 TIDPKVAFP----RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDK 145 Query: 363 RC------GFVQYANRPSAE 404 GFV + N E Sbjct: 146 TTNRHRGFGFVTFENEDVVE 165 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%) Frame = +3 Query: 219 TQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC---GFVQ 380 T G+ +D+ + +F+GGL + D+L+ F+ +GE+ + ++ P KR GFV Sbjct: 9 TSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68 Query: 381 YANRPSAE 404 +A+ S + Sbjct: 69 FADPASVD 76
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 45.1 bits (105), Expect = 1e-04 Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 6/140 (4%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ V+ D T RS+G+GFV F DP + + + P + Sbjct: 44 FGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ--------------PHHELDSK 89 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 + +V P + AQ IFVGGL N + +KQ F +G+V + K Sbjct: 90 TIDPKVAFP----RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDK 145 Query: 363 RC------GFVQYANRPSAE 404 GFV + N E Sbjct: 146 TTNRHRGFGFVTFENEDVVE 165 Score = 35.8 bits (81), Expect = 0.088 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%) Frame = +3 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC--- 368 P T+ S +DP +F+GGL + D+L+ F+ +GE+ + ++ P KR Sbjct: 7 PGTSGSANDSQHDPGK--MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64 Query: 369 GFVQYANRPSAE 404 GFV +A+ S + Sbjct: 65 GFVTFADPASVD 76
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 45.1 bits (105), Expect = 1e-04 Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + +++ D T S GY FV F T+ RA+ +NG+ ++ +++ A Sbjct: 136 INTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYA--------- 186 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 G +S D T ++V L +T+D L +F YG +V I K G Sbjct: 187 ---------RPGGESIKD---TNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTG 234 Query: 372 ------FVQYANRPSAE 404 FV++ R A+ Sbjct: 235 KPRGVAFVRFNKREEAQ 251
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 44.7 bits (104), Expect = 2e-04 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 8/134 (5%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR---KTT 182 VK VVT+K + +G+G+V F + RA+ E+ + + R K T Sbjct: 29 VKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKIDVTVAKKKLRNKSKET 88 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 E P + ++ + + L +ED LK VF YG V+ V IP Sbjct: 89 RKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKP 148 Query: 357 -GKRCG--FVQYAN 389 GK G FVQ+ N Sbjct: 149 DGKMRGFAFVQFKN 162
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 44.7 bits (104), Expect = 2e-04 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ KV TD+ SKGYGFV F ++ ++NGM + + + +G Sbjct: 113 FGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKF------ 165 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---- 350 IP + + T ++V + ++ LK+ F PYG++ K+ Sbjct: 166 -------IPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKE 218 Query: 351 -PVGKRCGFVQYANRPSAE 404 K GFV + +AE Sbjct: 219 DGKSKGFGFVAFETTEAAE 237 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/58 (39%), Positives = 36/58 (62%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 Y ++ AKV+TD+ RSKG+GFV F +E A+TE+NG S+P+ + A ++ Sbjct: 310 YGNITSAKVMTDEEG-RSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKE 366 Score = 42.0 bits (97), Expect = 0.001 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 10/140 (7%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-----GPAANRK 176 V +V D +T RS GY +V F P + RA+ MN ++P+RI P+ R Sbjct: 28 VLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRS 87 Query: 177 TTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV 356 G +F+ LD + A+ F+ +G ++ K+ Sbjct: 88 GVG------------------------NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVAT 123 Query: 357 -----GKRCGFVQYANRPSA 401 K GFV + +A Sbjct: 124 DEKGNSKGYGFVHFETEEAA 143 Score = 38.5 bits (88), Expect = 0.014 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE-MNGMPCSSRPMRIGPAANRKT 179 Y + KV++ K +SKG+GFV F + TE A A + +NG A +K Sbjct: 206 YGKITSYKVMS-KEDGKSKGFGFVAF-ETTEAAEAAVQALNGKDMGEGKSLYVARAQKKA 263 Query: 180 TGVQERVPIPNTNTQGAQSDNDPN-NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 QE + + Q ++ ++V LD + +D L+ F+PYG + K+ Sbjct: 264 ERQQE---LKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKV 318
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 44.3 bits (103), Expect = 2e-04 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + +++ D T S GY FV F + RA+ +NG+ ++ +++ A Sbjct: 153 INTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA--------- 203 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 G +S D T ++V L +T+D L +F YG +V I K G Sbjct: 204 ---------RPGGESIKD---TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG 251 Query: 372 ------FVQYANRPSAE 404 FV+Y R A+ Sbjct: 252 RPRGVAFVRYNKREEAQ 268 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM--PCSSRPMRIGPA---A 167 Y S+ ++ DK+T R +G FV++ E A++ +N + S+P+ + A Sbjct: 236 YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAQEHG 295 Query: 168 NRKTTGVQERVPIPNTN 218 K ++ +P+ N Sbjct: 296 KAKAAHFMSQIGVPSAN 312
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 44.3 bits (103), Expect = 2e-04 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + +++ D T S GY FV F + RA+ +NG+ ++ +++ A Sbjct: 151 INTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA--------- 201 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 G +S D T ++V L +T+D L +F YG +V I K G Sbjct: 202 ---------RPGGESIKD---TNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG 249 Query: 372 ------FVQYANRPSAE 404 FV+Y R A+ Sbjct: 250 RPRGVAFVRYNKREEAQ 266 Score = 29.3 bits (64), Expect = 8.2 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 128 Y S+ ++ DK+T R +G FV++ E A++ +N + Sbjct: 234 YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 275
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 44.3 bits (103), Expect = 2e-04 Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 5/165 (3%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V+ A++V DK++ RSKG +V+F + +A ++G P+ + K + Sbjct: 266 VRDAQIVRDKISGRSKGVAYVEFCH-EDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAR 324 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP-----V 356 E + A S P + + V + N+T++ +K +F P+G++ V + Sbjct: 325 EAAELAR-----AASAEIPFH-RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR 378 Query: 357 GKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQT 491 K G++QY N SA N+R+ G +T Sbjct: 379 SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTET 423
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/48 (45%), Positives = 30/48 (62%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 +FVG L ++TED K++FA YGE V I GK GF++ +R AE Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAE 346
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/86 (25%), Positives = 40/86 (46%) Frame = +3 Query: 6 PSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTG 185 P AKV+ D+ + RS+G+GF+ F A+ MN + RP+R+ A Sbjct: 241 PGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAG------ 294 Query: 186 VQERVPIPNTNTQGAQSDNDPNNTTI 263 ++ P+ + +ND +N+ + Sbjct: 295 --QKAPVSSPPVVETSPENDSDNSEL 318
>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy| suppressor of sporulation protein msa2) Length = 529 Score = 43.9 bits (102), Expect = 3e-04 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 2/143 (1%) Frame = +3 Query: 48 MRSKGYGFVKFGDPTEQAR--AMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNT 221 ++ K FV F DP R M+ ++G+ +R ++IG K +G P+P+ Sbjct: 354 LQEKHICFVTFVDPVSAFRFFEMSNIHGLVIRNRRLKIGWG---KHSG-----PLPSNIA 405 Query: 222 QGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 401 N I++G D ++T + LK+ F +GE+ +V K C FV + + SA Sbjct: 406 LAVAGGASRN---IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASA 462 Query: 402 EXXXXXXXXXXXXXXNVRLSWGR 470 N R+S+G+ Sbjct: 463 -INAIDRIKQKKGYENYRISYGK 484 Score = 35.4 bits (80), Expect = 0.11 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 401 +F+G L +TED +++ P+G + +KI + FV + N +A Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAA 254
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/48 (45%), Positives = 30/48 (62%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 +FVG L ++TED K++FA YGE V I GK GF++ +R AE Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAE 338
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 43.5 bits (101), Expect = 4e-04 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + +++ D T S GY FV F + A+ +NG+ ++ +++ A Sbjct: 111 INTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYAR-------- 162 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 G +S D N ++V L +T+D L+++F YG +V I K G Sbjct: 163 ----------PGGESIKDTN---LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTG 209 Query: 372 ------FVQYANRPSAE 404 FV++ R A+ Sbjct: 210 KPRGVAFVRFNKREEAQ 226
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 43.5 bits (101), Expect = 4e-04 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y V +K++ D+ T RS+G+GFV F D A+ MNG R + + A +R + Sbjct: 31 YGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90 Query: 183 G 185 G Sbjct: 91 G 91
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 43.1 bits (100), Expect = 5e-04 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 5/130 (3%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 ++ DK T + +G FVK+ + RA+ ++ + P GP R G +ER+ Sbjct: 151 LIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQ--ITLPGGTGPVQVRYADGERERIGT 208 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP-----VGKRCG 371 +FVG L+ TE ++++F +G V V + + CG Sbjct: 209 LEFK--------------LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCG 254 Query: 372 FVQYANRPSA 401 FV+Y+++ +A Sbjct: 255 FVKYSSKETA 264 Score = 35.0 bits (79), Expect = 0.15 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 7/89 (7%) Frame = +3 Query: 159 PAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTT-IFVGGLDPNVTEDALKQVFAPYGEV 335 P + +G + PI + + +D ++T +FVG + TE+ ++ F +G V Sbjct: 87 PPVQQPLSGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNV 146 Query: 336 VHVKIPVGKR------CGFVQYANRPSAE 404 + V + KR C FV+YA A+ Sbjct: 147 LEVALIKDKRTGQQQGCCFVKYATSKDAD 175
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y SVK K+V D+ + SKGYGFV F + + + E + + + IGPA ++ Sbjct: 56 YGSVKEVKIVNDRAGV-SKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQV 114 Query: 183 GVQERVPIPNTNT 221 G+ +P T Sbjct: 115 GIPRSSIMPAAGT 127 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Frame = +3 Query: 201 PIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKR 365 P+P N A IFVGG+D E L++ F+ YG V VKI V K Sbjct: 15 PVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG 74 Query: 366 CGFVQYANRPSAE 404 GFV + + A+ Sbjct: 75 YGFVTFETQEDAQ 87
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y SVK K+V D+ + SKGYGFV F + + + E + + + IGPA ++ Sbjct: 56 YGSVKEVKIVNDRAGV-SKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQV 114 Query: 183 GVQERVPIPNTNT 221 G+ +P T Sbjct: 115 GIPRSSIMPAAGT 127 Score = 39.7 bits (91), Expect = 0.006 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Frame = +3 Query: 201 PIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKR 365 P+P N A IFVGG+D E L++ F+ YG V VKI V K Sbjct: 15 PVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKG 74 Query: 366 CGFVQYANRPSAE 404 GFV + + A+ Sbjct: 75 YGFVTFETQEDAQ 87
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 43.1 bits (100), Expect = 5e-04 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 Y + +KV+TD+ T RS+G+GFV F A+ MNG R + + A +R Sbjct: 31 YGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87 Score = 30.0 bits (66), Expect = 4.8 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +3 Query: 264 FVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 FVGGL + ++L+ FA YGE++ K+ + G Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETG 46
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 42.7 bits (99), Expect = 7e-04 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 6/137 (4%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 + +++ D T S GY FV F + A+ +NG+ ++ +++ A Sbjct: 128 INTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYAR-------- 179 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 G +S D N ++V L +T+D L+++F YG +V I K G Sbjct: 180 ----------PGGESIKDTN---LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTG 226 Query: 372 ------FVQYANRPSAE 404 FV++ R A+ Sbjct: 227 RPRGVAFVRFNKREEAQ 243 Score = 29.3 bits (64), Expect = 8.2 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGM 128 Y ++ ++ DK+T R +G FV+F E A++ +N + Sbjct: 211 YGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNV 252
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 42.7 bits (99), Expect = 7e-04 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + V +K++ D+ T RS+G+GFV F D A+ EMNG R + + A +R Sbjct: 29 FGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 42.7 bits (99), Expect = 7e-04 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 6/155 (3%) Frame = +3 Query: 48 MRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQG 227 M++KG+ ++ F + EQ +A+ E++ + R M I + N P+ + Sbjct: 180 MKNKGFCYMFFKN-VEQMKAVLELSESHLNGRNMLIKDSENYSGR--------PDKDDLV 230 Query: 228 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG------FVQYAN 389 A S N P+ +FVG L +VT+D L++ F G++V +++ + G F+ + N Sbjct: 231 AMSKNPPSRI-LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKN 289 Query: 390 RPSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQTQ 494 + +R+ +G S +Q + Sbjct: 290 EEGSTNELKDKSCRKIAGRPLRMEYGEDRSKRQVR 324
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 42.7 bits (99), Expect = 7e-04 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 3/136 (2%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y S + AKV D +T +S GYG++ F D + A E N + ++I P + K T Sbjct: 134 YQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFNYTVFFGQEVKIMP--SMKNT 191 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGL---DPNVTEDALKQVFAPYGEVVHVKIP 353 ++ + T +F L +P +T + + YG V+ + Sbjct: 192 LFRKNI-----------------GTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSCLLE 234 Query: 354 VGKRCGFVQYANRPSA 401 K GFV + N SA Sbjct: 235 RRKNIGFVYFDNDISA 250
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 42.7 bits (99), Expect = 7e-04 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y V +K++ D+ T RS+G+GFV F D A+ MNG R + + A +R + Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90 Query: 183 G 185 G Sbjct: 91 G 91
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/73 (30%), Positives = 36/73 (49%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y SVK K+V D+ + SKGYGF+ F + + + E + + + IGPA ++ Sbjct: 56 YGSVKEVKIVNDRAGV-SKGYGFITFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQV 114 Query: 183 GVQERVPIPNTNT 221 G+ +P T Sbjct: 115 GIPRSSLMPAAGT 127 Score = 38.1 bits (87), Expect = 0.018 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%) Frame = +3 Query: 201 PIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKR 365 P+P N IFVGG+D E+ L++ F+ YG V VKI V K Sbjct: 15 PVPLNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKG 74 Query: 366 CGFVQYANRPSAE 404 GF+ + + A+ Sbjct: 75 YGFITFETQEDAQ 87
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKT--- 179 SV ++V D+ T + KGYGF ++ D AM +NG S R +R+ AA+ K Sbjct: 41 SVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100 Query: 180 -TGVQERVPIPNTNTQGAQSDND-PNNTTIFVGGLDPNVTEDALKQV 314 + PI ++ D P + T V L P + +KQ+ Sbjct: 101 LKSLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQM 147 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 404 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 405 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 488 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKT--- 179 SV ++V D+ T + KGYGF ++ D AM +NG S R +R+ AA+ K Sbjct: 41 SVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 100 Query: 180 -TGVQERVPIPNTNTQGAQSDND-PNNTTIFVGGLDPNVTEDALKQV 314 + PI ++ D P + T V L P + +KQ+ Sbjct: 101 LKSLGPAAPIIDSPYGDPIDPEDAPESITRAVASLPPEQMFELMKQM 147 Score = 31.6 bits (70), Expect = 1.7 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 404 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 405 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 488 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/101 (25%), Positives = 44/101 (43%) Frame = +3 Query: 36 DKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNT 215 D++T + +GYGFV+F + A+ MN + +P+R+ Sbjct: 47 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRV-------------------- 86 Query: 216 NTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVV 338 N A + N IF+G LDP + E L F+ +G ++ Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVIL 127 Score = 34.3 bits (77), Expect = 0.26 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTG 185 K++ D T SKGY F+ F A+ MNG +RP+ + A + + G Sbjct: 131 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 184 Score = 33.9 bits (76), Expect = 0.33 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%) Frame = +3 Query: 252 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPSAE 404 + T++VGGLD V+E L ++F G VV+ +P + GFV++ + A+ Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/82 (28%), Positives = 40/82 (48%) Frame = +3 Query: 159 PAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVV 338 PA ++ + E + I N + + +FVG L P++TE+ ++++F YG+ Sbjct: 42 PANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG 101 Query: 339 HVKIPVGKRCGFVQYANRPSAE 404 V I K GF++ R AE Sbjct: 102 EVFIHKDKGFGFIRLETRTLAE 123 Score = 31.2 bits (69), Expect = 2.2 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 + KG+GF++ T A E++ MP + +R+ A Sbjct: 107 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC--------------------- 145 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR-----CGFVQYANRP 395 ++ ++ V L V+ + L++ F+ +G+V + V R G V+++ +P Sbjct: 146 ------HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKP 199 Query: 396 SA 401 +A Sbjct: 200 AA 201
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/82 (28%), Positives = 40/82 (48%) Frame = +3 Query: 159 PAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVV 338 PA ++ + E + I N + + +FVG L P++TE+ ++++F YG+ Sbjct: 42 PANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG 101 Query: 339 HVKIPVGKRCGFVQYANRPSAE 404 V I K GF++ R AE Sbjct: 102 EVFIHKDKGFGFIRLETRTLAE 123 Score = 31.2 bits (69), Expect = 2.2 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 + KG+GF++ T A E++ MP + +R+ A Sbjct: 107 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC--------------------- 145 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR-----CGFVQYANRP 395 ++ ++ V L V+ + L++ F+ +G+V + V R G V+++ +P Sbjct: 146 ------HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKP 199 Query: 396 SA 401 +A Sbjct: 200 AA 201
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/82 (28%), Positives = 40/82 (48%) Frame = +3 Query: 159 PAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVV 338 PA ++ + E + I N + + +FVG L P++TE+ ++++F YG+ Sbjct: 44 PANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG 103 Query: 339 HVKIPVGKRCGFVQYANRPSAE 404 V I K GF++ R AE Sbjct: 104 EVFIHKDKGFGFIRLETRTLAE 125 Score = 31.2 bits (69), Expect = 2.2 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 + KG+GF++ T A E++ MP + +R+ A Sbjct: 109 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC--------------------- 147 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR-----CGFVQYANRP 395 ++ ++ V L V+ + L++ F+ +G+V + V R G V+++ +P Sbjct: 148 ------HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKP 201 Query: 396 SA 401 +A Sbjct: 202 AA 203
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/82 (28%), Positives = 40/82 (48%) Frame = +3 Query: 159 PAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVV 338 PA ++ + E + I N + + +FVG L P++TE+ ++++F YG+ Sbjct: 47 PANGQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG 106 Query: 339 HVKIPVGKRCGFVQYANRPSAE 404 V I K GF++ R AE Sbjct: 107 EVFIHKDKGFGFIRLETRTLAE 128 Score = 31.2 bits (69), Expect = 2.2 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 + KG+GF++ T A E++ MP + +R+ A Sbjct: 112 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC--------------------- 150 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR-----CGFVQYANRP 395 ++ ++ V L V+ + L++ F+ +G+V + V R G V+++ +P Sbjct: 151 ------HSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKP 204 Query: 396 SA 401 +A Sbjct: 205 AA 206
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 41.6 bits (96), Expect = 0.002 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 6/132 (4%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ + + RS+G+GFV F DPT + NG P + I P Sbjct: 38 VMKNNESGRSRGFGFVTFADPTNVNHVL--QNG-PHTLDGRTIDPKP------------- 81 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI------PVGKRC 368 N + Q +F+GGL NVTE L+ F YG+V V I + Sbjct: 82 --CNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGF 139 Query: 369 GFVQYANRPSAE 404 GF+ + S E Sbjct: 140 GFLSFEEESSVE 151
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + + +K++ D+ T RS+G+GFV F D A+ MNG R + + A +R + Sbjct: 29 FGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSG 88 Query: 183 G 185 G Sbjct: 89 G 89
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/61 (32%), Positives = 33/61 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + V +K++ D+ + RS+G+GFV F D A+ EMNG R + + A +R + Sbjct: 29 FGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSG 88 Query: 183 G 185 G Sbjct: 89 G 89
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 41.6 bits (96), Expect = 0.002 Identities = 31/120 (25%), Positives = 58/120 (48%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V+ A+V+ ++ T +S+G+GFV E +A+ N + R + + AA R G + Sbjct: 162 VEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARR---GER 218 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 P P T Q + I+VG + + + L+Q+F+ +G+VV ++ + G Sbjct: 219 PERP-PRTFEQSYR---------IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETG 268 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/54 (35%), Positives = 30/54 (55%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 V A+VV D+ T RS+G+GFV E + A+ ++G R +R+ A +R Sbjct: 256 VVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 41.2 bits (95), Expect = 0.002 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 8/121 (6%) Frame = +3 Query: 36 DKMTMRSKGYGFVKFGDPTEQARAMTE----MNGMPCSSRPMRIGPAANRKTTGVQERVP 203 D +T RS+G+GFV F + + M + +NG I P ++ ++ + P Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV-------IDP---KRAKAMKTKEP 180 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCG 371 + IFVGGL P+ E+ +++ F +GEV +++P+ KR G Sbjct: 181 VKK----------------IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRG 224 Query: 372 F 374 F Sbjct: 225 F 225
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 41.2 bits (95), Expect = 0.002 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 8/121 (6%) Frame = +3 Query: 36 DKMTMRSKGYGFVKFGDPTEQARAMTE----MNGMPCSSRPMRIGPAANRKTTGVQERVP 203 D +T RS+G+GFV F + + M + +NG I P ++ ++ + P Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV-------IDP---KRAKAMKTKEP 180 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCG 371 + IFVGGL P+ E+ +++ F +GEV +++P+ KR G Sbjct: 181 VKK----------------IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRG 224 Query: 372 F 374 F Sbjct: 225 F 225
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/103 (25%), Positives = 44/103 (42%) Frame = +3 Query: 36 DKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNT 215 D++T +G+GFV+F + A+ +N + +P+++ A+ Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS---------------- 90 Query: 216 NTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV 344 A N IFVG LDP V E L F+ +G ++ V Sbjct: 91 ----AHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQV 129 Score = 33.5 bits (75), Expect = 0.44 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%) Frame = +3 Query: 252 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPSAE 404 + TI+VGGLD V+E L ++ G VV V +P + GFV++ A+ Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 41.2 bits (95), Expect = 0.002 Identities = 32/111 (28%), Positives = 47/111 (42%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + VK V+ D +T RS+G+GFV F D + + + + KT Sbjct: 43 FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRH------------ELDSKT- 89 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 + +V P AQ IFVGGL N T + +KQ F +G+V Sbjct: 90 -IDPKVAFPRR----AQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKV 135 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Frame = +3 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC--- 368 P S +DP +F+GGL T++ L++ F +GEV + ++ P+ KR Sbjct: 6 PQPGLASPDSPHDP--CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF 63 Query: 369 GFVQYANRPSAE 404 GFV + ++ + Sbjct: 64 GFVTFMDQAGVD 75
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/46 (41%), Positives = 27/46 (58%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPA 164 VV D+ T RS+G+GF+ F +P + AM MNG R +R+ A Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYG---EVVHVKIPVGKRC---GFVQYAN 389 +FVGGL+ N E AL+ F+ +G EVV VK +R GF+ + N Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTN 56
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 41.2 bits (95), Expect = 0.002 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 8/121 (6%) Frame = +3 Query: 36 DKMTMRSKGYGFVKFGDPTEQARAMTE----MNGMPCSSRPMRIGPAANRKTTGVQERVP 203 D +T RS+G+GFV F + + M + +NG I P ++ ++ + P Sbjct: 129 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV-------IDP---KRAKAMKTKEP 178 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCG 371 + IFVGGL P+ E+ +++ F +GEV +++P+ KR G Sbjct: 179 VKK----------------IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRG 222 Query: 372 F 374 F Sbjct: 223 F 223
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + V +KV+TD+ T RS+G+GFV F A+ MNG R + + A +R Sbjct: 31 FGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87 Score = 29.3 bits (64), Expect = 8.2 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +3 Query: 264 FVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 FVGGL + L+Q FA +G+V+ K+ + G Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETG 46
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 7/124 (5%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 +S GYGFV + P + +A+ +NG+ ++ +++ A Sbjct: 237 QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--------------------- 275 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-------PVGKRCGFVQYAN 389 S + ++V GL +T+ L+ +FAP+G ++ +I K GF+++ Sbjct: 276 PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDK 335 Query: 390 RPSA 401 R A Sbjct: 336 REEA 339 Score = 38.5 bits (88), Expect = 0.014 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V+ K+V D T + KGYGFV + E A A+ +NG +R +++ N+ Sbjct: 461 FGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNK 517 Score = 35.4 bits (80), Expect = 0.11 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 24/123 (19%) Frame = +3 Query: 186 VQERVPIPNTNTQGAQSDNDPNNTT-----IFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 VQ++V NTN + N N +T + V L +TED ++ +F+ GE+ VK+ Sbjct: 157 VQQQVQQANTNGNSGGAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKL 216 Query: 351 ----------PVGKRC---------GFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRS 473 P+ + GFV Y AE +++S+ R Sbjct: 217 IRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARP 276 Query: 474 PSN 482 S+ Sbjct: 277 SSD 279 Score = 33.9 bits (76), Expect = 0.33 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSA 401 IF+ L P E AL Q+F P+G V VKI P +C GFV N A Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEA 492
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 41.2 bits (95), Expect = 0.002 Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D T RS+G+GF+ + + + M ++RP +I G K ++ + Sbjct: 55 VMKDPKTKRSRGFGFITY--------SQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEID 106 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRCG 371 PN + +FVGGL + E+ L++ F +G++V V I GK+ G Sbjct: 107 SPNAGATVKK---------LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRG 157 Query: 372 F 374 F Sbjct: 158 F 158 Score = 35.0 bits (79), Expect = 0.15 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%) Frame = +3 Query: 210 NTNTQGAQSDNDPNNTT-IFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVGKRC--- 368 N N + +P +F+GGLD T+D LK F +G +V V K P KR Sbjct: 8 NGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGF 67 Query: 369 GFVQYA 386 GF+ Y+ Sbjct: 68 GFITYS 73
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 7/124 (5%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 +S GYGFV + P + +A+ +NG+ ++ +++ A Sbjct: 201 QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--------------------- 239 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-------PVGKRCGFVQYAN 389 S + ++V GL +T+ L+ +FAP+G ++ +I K GF+++ Sbjct: 240 PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDK 299 Query: 390 RPSA 401 R A Sbjct: 300 REEA 303 Score = 38.5 bits (88), Expect = 0.014 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 + +V+ K+V D T + KGYGFV + E A A+ +NG +R +++ N+ Sbjct: 425 FGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNK 481 Score = 33.9 bits (76), Expect = 0.33 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRC---GFVQYANRPSA 401 IF+ L P E AL Q+F P+G V VKI P +C GFV N A Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEA 456 Score = 33.9 bits (76), Expect = 0.33 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 25/132 (18%) Frame = +3 Query: 162 AANRKTTGVQERVPIPNTN-TQGAQSDNDPNNTT-----IFVGGLDPNVTEDALKQVFAP 323 AA ++ Q + PNTN G+ S N N +T + V L +TED ++ +F+ Sbjct: 112 AAVQQAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSS 171 Query: 324 YGEVVHVKI----------PVGKRC---------GFVQYANRPSAEXXXXXXXXXXXXXX 446 GE+ VK+ P+ + GFV Y AE Sbjct: 172 VGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNK 231 Query: 447 NVRLSWGRSPSN 482 +++S+ R S+ Sbjct: 232 TIKVSFARPSSD 243
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 +++G L +VTE+ LK++F+PYGE+ I K F++ R +AE Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAE 162 Score = 31.2 bits (69), Expect = 2.2 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 5/129 (3%) Frame = +3 Query: 30 VTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIP 209 +++ K + F+K RA +++G ++P+RI A Sbjct: 139 ISEAFINAEKNFAFLKIDYRANAERAKKDLDGRMRKNKPIRIRFA--------------- 183 Query: 210 NTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC-----GF 374 PN TTI V L P V+ + L + F +G+V I V R G Sbjct: 184 ------------PNATTIRVKNLTPFVSNELLFKSFEVFGQVERAVIIVDDRGKTTGEGI 231 Query: 375 VQYANRPSA 401 V++A + A Sbjct: 232 VEFARKSGA 240
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 40.8 bits (94), Expect = 0.003 Identities = 31/120 (25%), Positives = 57/120 (47%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V+ A+V+ ++ T RS+G+GFV E +A+ + + R + + AA R + Sbjct: 123 VEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSR--P 180 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 ER P T I+VG + ++ + L+QVF+ +G+VV ++ + G Sbjct: 181 ERAPRTFQPTY-----------RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESG 229 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 V A+VV D+ + RS+G+GFV E + A+ ++G R +R+ A R Sbjct: 217 VVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/46 (41%), Positives = 27/46 (58%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPA 164 VV D+ T RS+G+GF+ F +P + AM MNG R +R+ A Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYG---EVVHVKIPVGKRC---GFVQYAN 389 +FVGGL+ N E AL+ F+ +G EVV VK +R GF+ + N Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTN 56
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAAN 170 YPS+ KVV D+ +++G+GFV F D + +A E NG SRP+++ A + Sbjct: 53 YPSLVKTKVVRDREG-KTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATS 107 Score = 34.3 bits (77), Expect = 0.26 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRCGF 374 DPN+ +FVG L +V +++L Q F+ Y +V K+ GK GF Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGF 72
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 40.4 bits (93), Expect = 0.004 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 7/123 (5%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ D + RS+G+GFV + E AMT +RP + V RV Sbjct: 45 VMRDPNSKRSRGFGFVTYLSTDEVDAAMT--------ARPHK-----------VDGRVVE 85 Query: 207 PNTNTQGAQSDNDPNNTT---IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKR 365 P S + T IFVGG+ + ED L++ F YG++ ++I GK+ Sbjct: 86 PKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKK 145 Query: 366 CGF 374 GF Sbjct: 146 RGF 148
>YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C| Length = 612 Score = 40.4 bits (93), Expect = 0.004 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Frame = +3 Query: 69 FVKFGDPTEQAR--AMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDN 242 FV F DPT A+ AM+ + G + ++G K +G P+PN + Sbjct: 469 FVTFIDPTAAAQFYAMSSLYGFTVQKKRCKVGWG---KHSG-----PLPNALALAVSNGA 520 Query: 243 DPNNTTIFVGGLD---------PNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRP 395 N ++VG +D TE L+ +F YGEV + K C F+ Y N Sbjct: 521 SRN---VYVGNIDFVGDSLRDERVFTESNLRHIFQQYGEVEQINFLPEKNCCFINYTNIS 577 Query: 396 SA 401 +A Sbjct: 578 NA 579
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 40.4 bits (93), Expect = 0.004 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 5/102 (4%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERV- 200 ++V D+ T + KGYGF ++ D AM +NG S R +R+ AA+ K + + Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLG 105 Query: 201 ----PIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQV 314 I + + ++ P + + V L P + +KQ+ Sbjct: 106 TGAPVIESPYGESISPEDAPESISKAVASLPPEQMFELMKQM 147 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 404 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 405 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 488 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 40.4 bits (93), Expect = 0.004 Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 6/146 (4%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI---GPAANRKTTGVQERVPIPNTNT 221 +SKGY F++F + A+ N M R +R+ GP + PN + Sbjct: 520 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS------------PNARS 567 Query: 222 QGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGE---VVHVKIPVGKRCGFVQYANR 392 Q ++ T+FV GL + TE+ LK+ F V + K GFV + + Sbjct: 568 QPSK--------TLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSE 619 Query: 393 PSAEXXXXXXXXXXXXXXNVRLSWGR 470 A+ V L W + Sbjct: 620 EDAKAAKEAMEDGEIDGNKVTLDWAK 645 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Frame = +3 Query: 153 IGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALK-QVFAPYG 329 + PA ++ + ++ +P Q + +F+G L+PN + LK + P+ Sbjct: 273 VKPAPGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFA 332 Query: 330 E----VVHVKIPVGKRCGFVQYANRPSAE 404 + VV V+ ++ G+V + + E Sbjct: 333 KNDLAVVDVRTGTNRKFGYVDFESAEDLE 361 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 116 A++VTD+ T SKG+GFV F + E A+A E Sbjct: 597 ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 627 Score = 30.0 bits (66), Expect = 4.8 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 1/171 (0%) Frame = +3 Query: 6 PSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTG 185 P K V D T ++ +G+V F + +A+ E+ G+ +++ R + Sbjct: 330 PFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKK 388 Query: 186 VQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV-KIPVGK 362 V+ T+ L N+TED LK+VF E+ V + K Sbjct: 389 VRAA-------------------RTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK 429 Query: 363 RCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQTQPQEATQW 515 ++++ + AE +V L + +Q + + + W Sbjct: 430 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTW 480
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 40.4 bits (93), Expect = 0.004 Identities = 29/121 (23%), Positives = 57/121 (47%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGV 188 +V+ A+V+ ++ T +S+G+GFV E A+ + N + R + + AA R Sbjct: 175 TVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR----- 229 Query: 189 QERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC 368 + + A +P ++VG L +V L+Q+F+ +G+VV ++ + Sbjct: 230 -------GSRPERAPRVYEP-AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRET 281 Query: 369 G 371 G Sbjct: 282 G 282 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 A+VV D+ T RS+G+GFV D E A++ ++G R +R+ A R Sbjct: 273 ARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 40.4 bits (93), Expect = 0.004 Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 6/146 (4%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI---GPAANRKTTGVQERVPIPNTNT 221 +SKGY F++F + A+ N M R +R+ GP + PN + Sbjct: 523 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGS------------PNARS 570 Query: 222 QGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGE---VVHVKIPVGKRCGFVQYANR 392 Q ++ T+FV GL + TE+ LK+ F V + K GFV + + Sbjct: 571 QPSK--------TLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSE 622 Query: 393 PSAEXXXXXXXXXXXXXXNVRLSWGR 470 A+ V L W + Sbjct: 623 EDAKAAKEAMEDGEIDGNKVTLDWAK 648 Score = 32.3 bits (72), Expect = 0.97 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 4/155 (2%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 RSKG +++F + + + E G R + + + QER G Sbjct: 430 RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR--QERT--------GK 479 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG--FVQYANRPSAE 404 S + T+ + L + TE+ L++VF + + P GK G F+++A+ A+ Sbjct: 480 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAK 539 Query: 405 XXXXXXXXXXXXXXNVR--LSWGRSPSNKQTQPQE 503 +R L R N ++QP + Sbjct: 540 EALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSK 574 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 116 A++VTD+ T SKG+GFV F + E A+A E Sbjct: 600 ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 630
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y V +K++ D+ T RS+G+GFV F A+ MNG R + + A +R Sbjct: 10 YGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGR 69 Query: 183 G 185 G Sbjct: 70 G 70
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 ++V D+ T + KGYGF ++ D AM +NG S R +R+ AA+ K Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 96 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 404 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 405 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 488 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>SLT11_ASPFU (Q4W9V0) Pre-mRNA-splicing factor slt11| Length = 383 Score = 40.0 bits (92), Expect = 0.005 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 3/113 (2%) Frame = +3 Query: 75 KFGDPTEQARAMTEMNGMPCSSRP---MRIGPAANRKTTGVQERVPIPNTNTQGAQSDND 245 ++G+ R G P R MR G A R G + P P A D Sbjct: 184 RYGNGPGPIRTSESRRGTPLPGRGRGNMR-GGRAGRPFPGTAQIPPSPEDYLPPA----D 238 Query: 246 PNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 PN ++FV G++ ++ E L+ F +G++ + C F+ +A R AE Sbjct: 239 PNIMSLFVTGVEDDLPEHTLRTFFTQFGQLRSLICSHRAHCAFINFATREGAE 291
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 ++V D+ T + KGYGF ++ D AM +NG S R +R+ AA+ K Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 96 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 404 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 405 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 488 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = +3 Query: 24 KVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 ++V D+ T + KGYGF ++ D AM +NG S R +R+ AA+ K Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 96 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = +3 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVG------KRCGFVQYANRPSAE 404 D + ++FVG + TE+ LK +F+ G VV ++ K GF +Y ++ +A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 405 XXXXXXXXXXXXXXNVRLSWGRSPSNKQ 488 +R+ S NK+ Sbjct: 72 SAMRNLNGREFSGRALRVDNAASEKNKE 99
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/51 (35%), Positives = 28/51 (54%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR 173 +K++ D+ T RS+G+GFV F D A+ MNG R + + A +R Sbjct: 37 SKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPA 164 Y + VV D+ T RS+G+GFV F + + AM MNG R +R+ A Sbjct: 29 YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 Score = 35.8 bits (81), Expect = 0.088 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 422 +FVGGL + E AL+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 423 XXXXXXXXNVRLSW-GRSPSNK 485 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPA 164 Y + VV D+ T RS+G+GFV F + + AM MNG R +R+ A Sbjct: 29 YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 Score = 34.7 bits (78), Expect = 0.20 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 422 +FVGGL + E +L+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 423 XXXXXXXXNVRLSW-GRSPSNK 485 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPA 164 Y + VV D+ T RS+G+GFV F + + AM MNG R +R+ A Sbjct: 29 YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 Score = 35.8 bits (81), Expect = 0.088 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 422 +FVGGL + E AL+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 423 XXXXXXXXNVRLSW-GRSPSNK 485 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPA 164 Y + VV D+ T RS+G+GFV F + + AM MNG R +R+ A Sbjct: 29 YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 Score = 34.7 bits (78), Expect = 0.20 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 422 +FVGGL + E +L+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 423 XXXXXXXXNVRLSW-GRSPSNK 485 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPA 164 Y + VV D+ T RS+G+GFV F + + AM MNG R +R+ A Sbjct: 29 YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 Score = 35.8 bits (81), Expect = 0.088 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRPSAEXXXXXX 422 +FVGGL + E AL+QVF+ YG++ V + + GFV + N A+ Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 423 XXXXXXXXNVRLSW-GRSPSNK 485 +R+ G+S N+ Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNR 89
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Frame = +3 Query: 90 TEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFV 269 T ++ + + +G P SR NR+ + + + P + + +S + P T + + Sbjct: 111 TSRSSSSSSSSGSPSPSRRRH----DNRRRSRSKSKPPKRDEKERKRRSPS-PKPTKVHI 165 Query: 270 GGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 404 G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 166 GRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Frame = +3 Query: 90 TEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFV 269 T ++ + + +G P SR NR+ + + + P + + +S + P T + + Sbjct: 111 TSRSSSSSSSSGSPSPSRRRH----DNRRRSRSKSKPPKRDEKERKRRSPS-PKPTKVHI 165 Query: 270 GGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 404 G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 166 GRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Frame = +3 Query: 90 TEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFV 269 T ++ + + +G P SR NR+ + + + P + + +S + P T + + Sbjct: 111 TSRSSSSSSSSGSPSPSRRRH----DNRRRSRSKSKPPKRDEKERKRRSPS-PKPTKVHI 165 Query: 270 GGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 404 G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 166 GRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Frame = +3 Query: 90 TEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFV 269 T ++ + + +G P SR NR+ + + + P + + +S + P T + + Sbjct: 111 TSRSSSSSSSSGSPSPSRRRH----DNRRRSRSKSKPPKRDEKERKRRSPS-PKPTKVHI 165 Query: 270 GGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 404 G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 166 GRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Frame = +3 Query: 90 TEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFV 269 T ++ + + +G P SR NR+ + + + P + + +S + P T + + Sbjct: 111 TSRSSSSSSSSGSPSPSRRRH----DNRRRSRSKSKPPKRDEKERKRRSPS-PKPTKVHI 165 Query: 270 GGLDPNVTEDALKQVFAPYGEVVHVKIPV-------GKRCGFVQYANRPSAE 404 G L NVT+D + ++F+ YG++ + +PV K +V++ N AE Sbjct: 166 GRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 217
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 39.7 bits (91), Expect = 0.006 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPA 164 Y + VV D+ T RS+G+GFV F + + AM MNG R +R+ A Sbjct: 28 YGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81 Score = 34.7 bits (78), Expect = 0.20 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 6/54 (11%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYG---EVVHVKIPVGKRC---GFVQYANRPSAE 404 +F+GGL+ ED L+Q F YG EVV VK KR GFV + N A+ Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 39.7 bits (91), Expect = 0.006 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 3/126 (2%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPT---EQARAMTEMNGMPCSSRPMRIGPAANR 173 Y +V K++ D T RS+G+GF+ F P+ E + ++G P R P + Sbjct: 182 YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVID--PKRAIPRDEQ 239 Query: 174 KTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP 353 TG IFVGG+ P+V ++ F+ +G ++ ++ Sbjct: 240 DKTG------------------------KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLM 275 Query: 354 VGKRCG 371 + K G Sbjct: 276 LDKDTG 281 Score = 37.4 bits (85), Expect = 0.030 Identities = 16/49 (32%), Positives = 29/49 (59%) Frame = +3 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 + T + +++D + +F+GGL+ + TED L++ F YG V +KI Sbjct: 142 VTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI 190
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 39.7 bits (91), Expect = 0.006 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 5/130 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + V + D T RS+G+GF+ F D + + ++K Sbjct: 91 FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-------------------DQKEH 131 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDP-NVTEDALKQVFAPYGEVVHVKIP-- 353 + RV P + DP IFVGGL+P + TE+ +++ F +GE+ +++P Sbjct: 132 RLDGRVIDPK---KAMAMKKDPVK-KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMD 187 Query: 354 --VGKRCGFV 377 + KR GFV Sbjct: 188 PKLNKRRGFV 197 Score = 34.3 bits (77), Expect = 0.26 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 12/86 (13%) Frame = +3 Query: 183 GVQERVPIPNTNTQGAQSD------NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV 344 G++ R P P + A D N+ + +FVGGL + ++ LK F +GEVV Sbjct: 38 GLEARPPRPRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDC 97 Query: 345 KIPV------GKRCGFVQYANRPSAE 404 I + + GF+ + + S E Sbjct: 98 TIKMDPNTGRSRGFGFILFKDAASVE 123
>SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1| Length = 620 Score = 39.7 bits (91), Expect = 0.006 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 13/126 (10%) Frame = +3 Query: 129 PCSSRPMRIGPAANR----KTTGVQERVPIPNTNTQGAQSDNDPN---------NTTIFV 269 P S RP R P+ + T + VP P + + + DP + T+F+ Sbjct: 352 PRSGRPRR-SPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERDPTIPPDSIKVYSRTLFL 410 Query: 270 GGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAEXXXXXXXXXXXXXXN 449 GG+ +V E L+ +F +G V + + R GF++ R +AE Sbjct: 411 GGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKAQVAMENVPFADTT 470 Query: 450 VRLSWG 467 +R WG Sbjct: 471 IRTKWG 476
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 39.7 bits (91), Expect = 0.006 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 3/143 (2%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 + KGY F++F + A+ N M R +R+ QG+ Sbjct: 521 KPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL--------------------ELQGS 560 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGE---VVHVKIPVGKRCGFVQYANRPSA 401 S + P+ T +FV GL + TE+ LK+ F V + K GFV + + A Sbjct: 561 NSRSQPSKT-LFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDA 619 Query: 402 EXXXXXXXXXXXXXXNVRLSWGR 470 + V L W + Sbjct: 620 KAAKEAMEDGEIDGNKVTLDWAK 642 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 116 A++VTD+ T SKG+GFV F + E A+A E Sbjct: 594 ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 624 Score = 30.0 bits (66), Expect = 4.8 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%) Frame = +3 Query: 144 PMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALK----Q 311 P++ P +K Q+ P P N +F+G L+PN + + LK + Sbjct: 273 PVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFN--LFIGNLNPNKSVNELKFAISE 330 Query: 312 VFAPYG-EVVHVKIPVGKRCGFVQYANRPSAE 404 +FA VV V+ ++ G+V + + E Sbjct: 331 LFAKNDLAVVDVRTGTNRKFGYVDFESAEDLE 362 Score = 29.3 bits (64), Expect = 8.2 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 1/168 (0%) Frame = +3 Query: 15 KGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQE 194 K V D T ++ +G+V F + +A+ E+ G+ +++ R + V+ Sbjct: 334 KNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRA 392 Query: 195 RVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV-KIPVGKRCG 371 T+ L N+TED LK+VF E+ V + K Sbjct: 393 A-------------------RTLLAKNLSFNITEDELKEVFEDAMEIRLVSQDGKSKGIA 433 Query: 372 FVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQTQPQEATQW 515 ++++ + AE +V L + +Q + + + W Sbjct: 434 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTW 481
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 39.7 bits (91), Expect = 0.006 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTG 185 A+V+ D+ + RSKG+GFV E +A+ +NG R +R+ A R G Sbjct: 286 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRG 340 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 +V+ +V+ DK+T RS+G+GFV E A + NG RP+R+ Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 39.3 bits (90), Expect = 0.008 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 19/143 (13%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANR--- 173 + +K A VV D RS+G+GFV F + A+ + + +R+ A R Sbjct: 49 FAPIKHAVVVKDT-NKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRS 107 Query: 174 -KTTGVQERVPIPNTNT---QGAQSDNDPNNTTIFVGGLDPNVTED---------ALKQV 314 KT+ V E+ ++ Q + ++D + + G + + LK++ Sbjct: 108 KKTSEVVEKSTPESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKI 167 Query: 315 FAPYGEVVHVKIP---VGKRCGF 374 F YG VV IP GK CGF Sbjct: 168 FGRYGTVVEATIPRKRDGKLCGF 190 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%) Frame = +3 Query: 192 ERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI--PVGKR 365 E V +P++N Q+D+ + T+FV + +VT++ L F+ + + H + KR Sbjct: 6 ENVEVPSSNVS-KQNDDGLDMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKR 64 Query: 366 C---GFVQYA 386 GFV +A Sbjct: 65 SRGFGFVSFA 74
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 39.3 bits (90), Expect = 0.008 Identities = 31/111 (27%), Positives = 47/111 (42%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + VK V+ D +T RS+G+GFV F D + + + + KT Sbjct: 43 FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR------------HELDSKT- 89 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 + +V P + AQ IFVGGL N T + +K F +G+V Sbjct: 90 -IDPKVAFP----RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Frame = +3 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC--- 368 P S +DP +F+GGL T++ L++ F +GEV + ++ P+ KR Sbjct: 6 PQPGLASPDSPHDP--CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF 63 Query: 369 GFVQYANRPSAE 404 GFV + ++ + Sbjct: 64 GFVTFMDQAGVD 75
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 39.3 bits (90), Expect = 0.008 Identities = 31/111 (27%), Positives = 47/111 (42%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + VK V+ D +T RS+G+GFV F D + + + + KT Sbjct: 43 FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR------------HELDSKT- 89 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 + +V P + AQ IFVGGL N T + +K F +G+V Sbjct: 90 -IDPKVAFP----RRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKV 135 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Frame = +3 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC--- 368 P S +DP +F+GGL T++ L++ F +GEV + ++ P+ KR Sbjct: 6 PQPGLASPDSPHDP--CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF 63 Query: 369 GFVQYANRPSAE 404 GFV + ++ + Sbjct: 64 GFVTFMDQAGVD 75
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 39.3 bits (90), Expect = 0.008 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D + RS+G+GFV F E AM S+RP I G K +E Sbjct: 40 VMRDPASKRSRGFGFVTFSCMNEVDAAM--------SARPHTIDGRVVEPKRAVAREESA 91 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 P + + +FVGG+ + E L++ F YG++ +I K+ G Sbjct: 92 KPGAHVTVKK---------LFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSG 138 Score = 31.6 bits (70), Expect = 1.7 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGD 86 Y ++ +++TDK + + +G+GFV F D Sbjct: 123 YGKIESTEIITDKQSGKKRGFGFVTFND 150
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 38.9 bits (89), Expect = 0.010 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D + RS+G+GFV F E AM ++RP I G K +E Sbjct: 40 VMRDPASKRSRGFGFVTFSCMNEVDAAM--------ATRPHTIDGRVVEPKRAVAREESA 91 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 P + + +FVGG+ + E L++ F YG++ ++I K+ G Sbjct: 92 KPGAHVTVKK---------LFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSG 138
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 38.9 bits (89), Expect = 0.010 Identities = 25/100 (25%), Positives = 48/100 (48%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 +S+GYGFV+F A+ +N + + + +G +KT V+ Sbjct: 150 KSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFM-KKTDRVKP------------ 196 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 + T +++ LD +V+ED L++ FA +G++V + I Sbjct: 197 ----EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232 Score = 37.7 bits (86), Expect = 0.023 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Frame = +3 Query: 57 KGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQS 236 +GY FV F +P + RA +NG S+ + +G A + +E++ + + Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK---AEREQLLREQFKEKHEEQ 297 Query: 237 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI---PVGKRCGF 374 + I+V ++ VTE+ L++ F+ G + K+ GK GF Sbjct: 298 KMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGF 346 Score = 32.7 bits (73), Expect = 0.74 Identities = 18/68 (26%), Positives = 34/68 (50%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGV 188 ++ K++ D+ +SKG+GFV F P E A+ +G +P+ + A ++ + Sbjct: 329 TITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKM 387 Query: 189 QERVPIPN 212 Q +V N Sbjct: 388 QLQVQFGN 395 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%) Frame = +3 Query: 228 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRC--GFVQYAN 389 + + P +++VG L P+VTE L FA + + V++ G+ G+ + + Sbjct: 15 SSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLS 74 Query: 390 RPSAEXXXXXXXXXXXXXXNVRLSWG-RSPSNKQ 488 R A +R+ W R+P ++ Sbjct: 75 RQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARR 108
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 38.9 bits (89), Expect = 0.010 Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 3/115 (2%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ D T RS+G+GF+ + SR + A N + V RV Sbjct: 48 VMKDPKTKRSRGFGFITY-------------------SRAHMVDDAQNARPHKVDGRVVE 88 Query: 207 PNTNTQGAQSDNDPNNTTI---FVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 P + T+ FVGG+ + E+ L+ F YG VV I V K Sbjct: 89 PKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDK 143 Score = 37.7 bits (86), Expect = 0.023 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 6/48 (12%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVGKRC---GFVQYA 386 +F+GGLD T+++LKQ F +GE+V V K P KR GF+ Y+ Sbjct: 19 LFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS 66
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 38.9 bits (89), Expect = 0.010 Identities = 16/48 (33%), Positives = 30/48 (62%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 ++VG L ++T+D L+++F PYGE+ + + K F++ P+AE Sbjct: 304 LYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNAE 351
>SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cell wall protein| 1) Length = 561 Score = 38.5 bits (88), Expect = 0.014 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%) Frame = +3 Query: 162 AANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAP---YGE 332 +A + G+ +R+P +T T +D +P TI+VG L P+ +E+ LK +F+ Y Sbjct: 396 SAYSSSHGIHQRIP-ASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKR 454 Query: 333 VVHVKIPVGKRCGFVQYANRPSAEXXXXXXX---XXXXXXXNVRLSWGRSP 476 + G C FV++ N P A +RLS+ ++P Sbjct: 455 LCFRTKGNGPMC-FVEFENIPYAMEALKNLQGVCLSSSIKGGIRLSFSKNP 504
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 38.5 bits (88), Expect = 0.014 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 389 T+FVGG+D + E ++ FA YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYN 89 Score = 35.0 bits (79), Expect = 0.15 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKF-GDPTEQARAMTEMNGMPCSSRPMRIGPAANRKT 179 Y SVK K++TD+ T SKGYGFV F D Q +++N + +++GPA ++ Sbjct: 63 YGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQIN---FHGKKLKLGPAIRKQN 118 Query: 180 TGVQERVPIP 209 P P Sbjct: 119 LCTYHVQPRP 128
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 38.5 bits (88), Expect = 0.014 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 389 T+FVGG+D + E ++ FA YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFN 89 Score = 35.0 bits (79), Expect = 0.15 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVK-FGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKT 179 Y SVK K++TD+ T SKGYGFV F D Q +++N + +++GPA ++ Sbjct: 63 YGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQIN---FHGKKLKLGPAIRKQN 118 Query: 180 TGVQERVPIP 209 P P Sbjct: 119 LCAYHVQPRP 128
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 38.5 bits (88), Expect = 0.014 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 389 T+FVGG+D + E ++ FA YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFN 89 Score = 35.4 bits (80), Expect = 0.11 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 7/115 (6%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVK-FGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKT 179 Y SVK K++TD+ T SKGYGFV F D Q +++N + +++GPA ++ Sbjct: 63 YGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQIN---FHGKKLKLGPAIRKQN 118 Query: 180 T---GVQERVPIPNTNTQGAQSDN---DPNNTTIFVGGLDPNVTEDALKQVFAPY 326 VQ R P+ + Q N +PN T + P T + + Q Y Sbjct: 119 LCAYHVQPR-PLVFNHPPPPQFQNVWTNPNTETY----MQPTTTMNPITQYVQAY 168
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 38.5 bits (88), Expect = 0.014 Identities = 24/93 (25%), Positives = 37/93 (39%) Frame = +3 Query: 93 EQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVG 272 E + TE+NG + GP + G + N A D ++ +FVG Sbjct: 3 ENKQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRD-DDRKLFVG 61 Query: 273 GLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 GL TE L+ F YGE+ + + + G Sbjct: 62 GLSWETTEKELRDHFGKYGEIESINVKTDPQTG 94 Score = 38.1 bits (87), Expect = 0.018 Identities = 28/121 (23%), Positives = 52/121 (42%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y ++ V TD T RS+G+ F+ F + TE ++ + +S+ ++ P + Sbjct: 79 YGEIESINVKTDPQTGRSRGFAFIVFTN-TEAIDKVSAADEHIINSK--KVDPKKAKARH 135 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 G IFVGGL ++++ +K F +G +V V++P K Sbjct: 136 G------------------------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDK 171 Query: 363 R 365 + Sbjct: 172 Q 172
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 38.1 bits (87), Expect = 0.018 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 3/82 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKT- 179 + +VK + DK T SKG FV F DP A +G R + + PA N+ Sbjct: 337 FGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHLLPAVNKDAL 396 Query: 180 --TGVQERVPIPNTNTQGAQSD 239 TG ++ + + + D Sbjct: 397 AETGSKKTATLKQARAEQKKQD 418 Score = 32.3 bits (72), Expect = 0.97 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 8/155 (5%) Frame = +3 Query: 54 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPA---ANRKTTGVQERVPIPNTNTQ 224 S GYGFV F A M+G + + + A A TT + Sbjct: 666 SMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTFARRNAEASTTSI------------ 713 Query: 225 GAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP-----VGKRCGFVQYAN 389 + +T I + L T+ ++ +F+ G++ V++P + GFV+Y+ Sbjct: 714 -----SSGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYST 768 Query: 390 RPSAEXXXXXXXXXXXXXXNVRLSWGRSPSNKQTQ 494 A+ ++ L W S+ Q Q Sbjct: 769 VREAQSAMEALKHTHLLGRHLVLQWSHLASSTQQQ 803
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 38.1 bits (87), Expect = 0.018 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 5/48 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYA 386 T+FVGG+D V E+ +++ FA YG V VKI + K GFV ++ Sbjct: 48 TLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFS 95
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 37.7 bits (86), Expect = 0.023 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 389 T+FVGG+D + E ++ FA YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYGFVSFFN 89 Score = 35.0 bits (79), Expect = 0.15 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVK-FGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKT 179 Y SVK K++TD+ T SKGYGFV F D Q +++N + +++GPA ++ Sbjct: 63 YGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQKIVESQIN---FHGKKLKLGPAIRKQN 118 Query: 180 TGVQERVPIP 209 P P Sbjct: 119 LCAYHVQPRP 128
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 37.7 bits (86), Expect = 0.023 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 Y SVK ++ TD+ T R +G+GFV+ E+ A+ ++G R +++ A R+ Sbjct: 24 YGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVNKAKPRE 81 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 +I+VG L +V+E L VFA YG V V++P + G Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETG 39
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 Y + G VV D+ T RS+G+ FV F + AM NGM R +R+ Sbjct: 140 YGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRV 190 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 225 GAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 G++++ DPN T + V GL TE L++VF+ YG + V + +R G Sbjct: 108 GSRANPDPN-TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTG 155
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 37.7 bits (86), Expect = 0.023 Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 3/143 (2%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 +SKGY F++F + A+ N R +R+ R + PN +Q + Sbjct: 521 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS---------PNARSQPS 571 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVF---APYGEVVHVKIPVGKRCGFVQYANRPSA 401 + T+FV GL + TE+ LK+ F V + K GFV + + A Sbjct: 572 K--------TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDA 623 Query: 402 EXXXXXXXXXXXXXXNVRLSWGR 470 + V L W + Sbjct: 624 KAAKEAMEDGEIDGNKVTLDWAK 646 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 116 A++VTD+ T SKG+GFV F + E A+A E Sbjct: 598 ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 628
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 37.7 bits (86), Expect = 0.023 Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 3/143 (2%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 +SKGY F++F + A+ N R +R+ R + PN +Q + Sbjct: 520 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS---------PNARSQPS 570 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVF---APYGEVVHVKIPVGKRCGFVQYANRPSA 401 + T+FV GL + TE+ LK+ F V + K GFV + + A Sbjct: 571 K--------TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDA 622 Query: 402 EXXXXXXXXXXXXXXNVRLSWGR 470 + V L W + Sbjct: 623 KAAKEAMEDGEIDGNKVTLDWAK 645 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 116 A++VTD+ T SKG+GFV F + E A+A E Sbjct: 597 ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 627
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 37.7 bits (86), Expect = 0.023 Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 3/143 (2%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 +SKGY F++F + A+ N R +R+ R + PN +Q + Sbjct: 522 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS---------PNARSQPS 572 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVF---APYGEVVHVKIPVGKRCGFVQYANRPSA 401 + T+FV GL + TE+ LK+ F V + K GFV + + A Sbjct: 573 K--------TLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDA 624 Query: 402 EXXXXXXXXXXXXXXNVRLSWGR 470 + V L W + Sbjct: 625 KAAKEAMEDGEIDGNKVTLDWAK 647 Score = 31.2 bits (69), Expect = 2.2 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 116 A++VTD+ T SKG+GFV F + E A+A E Sbjct: 599 ARIVTDRETGSSKGFGFVDF-NSEEDAKAAKE 629
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 37.7 bits (86), Expect = 0.023 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ D T RS+G+GFV + E AM ++RP + V RV Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAM--------NARPHK-----------VDGRVVE 84 Query: 207 PNTNTQGAQSDNDPNNTT---IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKR 365 P S + T IFVGG+ + E L+ F YG++ ++I GK+ Sbjct: 85 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 144 Query: 366 CGF 374 GF Sbjct: 145 RGF 147
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 37.7 bits (86), Expect = 0.023 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%) Frame = +3 Query: 168 NRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 N ++T + ++ P Q A ++ +FV G+ + ED L+Q+F+ +G V HV+ Sbjct: 78 NNESTALDKKEP------QSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131 Query: 348 I---PVGKRC---GFVQYA 386 I PV K GF+ ++ Sbjct: 132 IMREPVTKASRGFGFLSFS 150
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 37.7 bits (86), Expect = 0.023 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ D T RS+G+GFV + E AM ++RP + V RV Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAM--------NARPHK-----------VDGRVVE 84 Query: 207 PNTNTQGAQSDNDPNNTT---IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKR 365 P S + T IFVGG+ + E L+ F YG++ ++I GK+ Sbjct: 85 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 144 Query: 366 CGF 374 GF Sbjct: 145 RGF 147
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 37.7 bits (86), Expect = 0.023 Identities = 24/100 (24%), Positives = 39/100 (39%) Frame = +3 Query: 54 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQ 233 S G+GFV+F D AM MNG + I + + R Q Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVR----------KQ 713 Query: 234 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP 353 + P T I + L T+ ++ + YG++ V++P Sbjct: 714 DSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP 753
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 37.7 bits (86), Expect = 0.023 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 Y + G VV D+ T RS+G+ FV F + AM NGM R +R+ Sbjct: 142 YGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRV 192 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 225 GAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 G++++ DPN T + V GL TE L++VF+ YG + V + +R G Sbjct: 110 GSRANPDPN-TCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTG 157
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 37.7 bits (86), Expect = 0.023 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 1/116 (0%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D T RS+G+GF+ + + A SRP +I G K ++ + Sbjct: 62 VMKDPRTKRSRGFGFITYSHSSMIDEAQ--------KSRPHKIDGRVVEPKRAVPRQDID 113 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 PN + +FVG L + E +++ F +G +V + I + K G Sbjct: 114 SPNAGATVKK---------LFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETG 160 Score = 33.9 bits (76), Expect = 0.33 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 13/73 (17%) Frame = +3 Query: 210 NTNTQGAQSDNDPNNTT-------IFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVG 359 N N+ G D ++ T +F+GGLD T++ LK F +G +V V K P Sbjct: 9 NGNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRT 68 Query: 360 KRC---GFVQYAN 389 KR GF+ Y++ Sbjct: 69 KRSRGFGFITYSH 81
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 37.7 bits (86), Expect = 0.023 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ D T RS+G+GFV + E AM ++RP + V RV Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAM--------NARPHK-----------VDGRVVE 84 Query: 207 PNTNTQGAQSDNDPNNTT---IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKR 365 P S + T IFVGG+ + E L+ F YG++ ++I GK+ Sbjct: 85 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 144 Query: 366 CGF 374 GF Sbjct: 145 RGF 147
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 37.7 bits (86), Expect = 0.023 Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ D T RS+G+GFV + E AM ++RP + V RV Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAM--------NARPHK-----------VDGRVVE 84 Query: 207 PNTNTQGAQSDNDPNNTT---IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKR 365 P S + T IFVGG+ + E L+ F YG++ ++I GK+ Sbjct: 85 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 144 Query: 366 CGF 374 GF Sbjct: 145 RGF 147
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 37.4 bits (85), Expect = 0.030 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGF 374 IFVGGL P+ E+ +++ F +GEV +++P+ KR GF Sbjct: 36 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 77
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 37.4 bits (85), Expect = 0.030 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y ++ V D T +SKG+ +V F DP A A E++ R + I PA +KT Sbjct: 324 YGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELDKQIFQGRLLHILPADAKKTH 383 Query: 183 GVQE 194 + E Sbjct: 384 RLDE 387 Score = 32.3 bits (72), Expect = 0.97 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 +F+ + + TE+ KQ+F+PYGE+ V + V R G Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTG 339
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 37.4 bits (85), Expect = 0.030 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNG 125 + V A+V+T+K+T RS+GYGFV F A++ MNG Sbjct: 54 FNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNG 94
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 37.4 bits (85), Expect = 0.030 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y +VK K++ D+ + SKGYGFV F E R + + R + I PA ++ Sbjct: 56 YGTVKSTKIIVDRAGV-SKGYGFVTFETEQEAQRLQADGECVVLRDRKLNIAPAIKKQPN 114 Query: 183 GVQERV 200 +Q V Sbjct: 115 PLQSIV 120 Score = 34.7 bits (78), Expect = 0.20 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYANRPSAE 404 IFVGG+ + TE L +VF+ YG V KI V K GFV + A+ Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEAQ 87
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 37.4 bits (85), Expect = 0.030 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D + RS+G+GFV F E AM ++RP I G K +E Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAAM--------AARPHSIDGRVVEPKRAVAREESG 103 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 P + + +FVGG+ + E L+ F YG++ ++I ++ G Sbjct: 104 KPGAHVTVKK---------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSG 150
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 37.4 bits (85), Expect = 0.030 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKRCGF 374 IFVGGL P+ E+ +++ F +GEV +++P+ KR GF Sbjct: 174 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 215
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 37.4 bits (85), Expect = 0.030 Identities = 20/62 (32%), Positives = 35/62 (56%) Frame = +3 Query: 12 VKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQ 191 V ++V D +T RS+G+G+V+F + + A ++G RP+RI A R++ + Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEF-ETADTLSAALALSGEDLMGRPVRITVAEPRRSFARE 176 Query: 192 ER 197 ER Sbjct: 177 ER 178
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 37.4 bits (85), Expect = 0.030 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D + RS+G+GFV F E AM ++RP I G K +E Sbjct: 40 VMRDPASKRSRGFGFVTFSSMAEVDAAM--------AARPHSIDGRVVEPKRAVAREESG 91 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 P + + +FVGG+ + E L+ F YG++ ++I ++ G Sbjct: 92 KPGAHVTVKK---------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSG 138
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 37.0 bits (84), Expect = 0.039 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYA 386 T+FVG L+ VTE+ L ++F G V+ VKIP K Q+A Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFA 53
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 37.0 bits (84), Expect = 0.039 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + +V AKV DK T SK +GFV + +P A+ MNG + +++ Sbjct: 424 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 474 Score = 34.3 bits (77), Expect = 0.26 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Frame = +3 Query: 225 GAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYA 386 G+Q + P +F+ L + L Q+F P+G VV K+ + K+ GFV Y Sbjct: 392 GSQKEG-PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 450 Query: 387 NRPSAE 404 N SA+ Sbjct: 451 NPVSAQ 456
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 37.0 bits (84), Expect = 0.039 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 + +V AKV DK T SK +GFV + +P A+ MNG + +++ Sbjct: 424 FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 474 Score = 34.3 bits (77), Expect = 0.26 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Frame = +3 Query: 225 GAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYA 386 G+Q + P +F+ L + L Q+F P+G VV K+ + K+ GFV Y Sbjct: 392 GSQKEG-PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 450 Query: 387 NRPSAE 404 N SA+ Sbjct: 451 NPVSAQ 456
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 36.6 bits (83), Expect = 0.051 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 1/123 (0%) Frame = +3 Query: 36 DKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNT 215 D++ M+S GY FV F D + A+ +++ P R+ + G P Sbjct: 29 DRVDMKS-GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGR------PRG 81 Query: 216 NTQGAQSDNDPNNTTIFVGGLDPNVT-EDALKQVFAPYGEVVHVKIPVGKRCGFVQYANR 392 + + A S+ P T +FV DP T E +++ F PYG+V +V+I + FVQ+ + Sbjct: 82 DAK-APSNLKPTKT-LFVINFDPIRTKEHDIEKHFEPYGKVTNVRI--RRNFSFVQFETQ 137 Query: 393 PSA 401 A Sbjct: 138 EDA 140
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 36.6 bits (83), Expect = 0.051 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 389 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 89 Score = 35.8 bits (81), Expect = 0.088 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK-- 176 Y SVK K++T++ T SKGYGFV F + + + + + + +++GPA ++ Sbjct: 63 YGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ--IHFHGKKLKLGPAIRKQKL 119 Query: 177 -TTGVQER--VPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 VQ R V P Q +PN T L P +T + + Q Y H Sbjct: 120 CARHVQPRPLVVNPPPPPQFQNVWRNPNTETY----LQPQITPNPVTQHVQAYSAYPHSP 175 Query: 348 IPVGKRCGFVQY 383 V C + Y Sbjct: 176 GQVITGCQLLVY 187
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 36.6 bits (83), Expect = 0.051 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 4/144 (2%) Frame = +3 Query: 63 YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDN 242 YG V F +Q +A+T G + + +T E P+ + + Sbjct: 379 YGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWVGPETESENEFRPLD----ERIDEFH 434 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVGKRCGFVQYANRPSAEXXX 413 T+F+G L+ T L+ +F +GE+V + K+ + F+QY + S Sbjct: 435 PKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAI 494 Query: 414 XXXXXXXXXXXNVRLSWGRS-PSN 482 ++L +G+S P+N Sbjct: 495 KKMDGEYLGNNRLKLGFGKSMPTN 518
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 36.6 bits (83), Expect = 0.051 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 7/123 (5%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 V+ D T RS+G+GFV + A E ++ A N + V RV Sbjct: 44 VMRDPNTKRSRGFGFVTY--------ATVE-----------KVDAAMNARPHKVDGRVVE 84 Query: 207 PNTNTQGAQSDNDPNNTT---IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV----GKR 365 P S + T IFVGG+ + E L+ F YG++ ++I GK+ Sbjct: 85 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 144 Query: 366 CGF 374 GF Sbjct: 145 RGF 147
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 36.6 bits (83), Expect = 0.051 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQYAN 389 T+FVGG+D + E + F YG V VKI V K GFV + N Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVN 89 Score = 35.8 bits (81), Expect = 0.088 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 5/132 (3%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK-- 176 Y SVK K++T++ T SKGYGFV F + + + + + + +++GPA ++ Sbjct: 63 YGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGSQ--IHFHGKKLKLGPAIRKQKL 119 Query: 177 -TTGVQER--VPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 VQ R V P Q +PN T L P +T + + Q Y H Sbjct: 120 CARHVQPRPLVVNPPPPPQFQNVWRNPNTETY----LQPQITPNPVTQHVQAYSAYPHSP 175 Query: 348 IPVGKRCGFVQY 383 V C + Y Sbjct: 176 GQVITGCQLLVY 187
>CWC2_YEAST (Q12046) Pre-mRNA-splicing factor CWC2 (Complexed with CEF1 protein| 2) (PRP19-associated complex protein 40) (Synthetic lethal with CLF1 protein 3) Length = 339 Score = 36.6 bits (83), Expect = 0.051 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 9/60 (15%) Frame = +3 Query: 252 NTTIFVGGLD---------PNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 N T++VGG+D P E ++ VF+ G++ ++ K CGFV++ + +AE Sbjct: 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAE 193
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 36.2 bits (82), Expect = 0.067 Identities = 21/91 (23%), Positives = 47/91 (51%) Frame = +3 Query: 90 TEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFV 269 + ++ + + +G P SR NR+ + + + P + + +S + P T + + Sbjct: 88 SSRSSSSSSSSGSPSPSRRRH----DNRRRSRSKSKQPKRDEKERKRRSPS-PRPTKVHI 142 Query: 270 GGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 G L NVT+D + ++F+ YG++ + +PV + Sbjct: 143 GRLTRNVTKDHILEIFSTYGKIKMIDMPVDR 173
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 36.2 bits (82), Expect = 0.067 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Frame = +3 Query: 30 VTDKMTMRSKG--YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 V K R +G Y F+KF + RA M+G P++IG TT Sbjct: 39 VVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTT------- 91 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQY 383 ++VGGL PN + AL + F +G + + G ++QY Sbjct: 92 ------------------RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQY 133 Query: 384 ANRPSAE 404 + +A+ Sbjct: 134 ESLDAAQ 140 Score = 31.2 bits (69), Expect = 2.2 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = +3 Query: 237 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYG--EVVHVKIPV---GKRCGFVQYANRPSA 401 D+ +F+G LD +V+E L++ F YG E V +K P G F+++ N A Sbjct: 4 DDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMA 63 Query: 402 EXXXXXXXXXXXXXXNVRLSWGRS 473 +++ +G++ Sbjct: 64 HRAKVAMSGRVIGRNPIKIGYGKA 87
>SLT11_USTMA (Q4PGU6) Pre-mRNA-splicing factor SLT11| Length = 324 Score = 36.2 bits (82), Expect = 0.067 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 8/133 (6%) Frame = +3 Query: 129 PCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDP-NVTEDAL 305 P S+ P ++ + ++ +T++ G +D + ++F+ L P ++ E ++ Sbjct: 185 PSSNINYPYSPTSSSPSKQAVAKILTSSTSSVGLPPPSDASVRSLFISNLPPEHLEEPSI 244 Query: 306 KQVFAPYG------EVVHVKIPVGKRCGFVQYANRPSAEXXXXXXX-XXXXXXXNVRLSW 464 +Q F ++ + + C FV +A R AE +RL W Sbjct: 245 RQFFLDLAPPLQAQDIKSITLVRASNCAFVNFATRDHAELAARRCEPKMRLGDKEIRLMW 304 Query: 465 GRSPSNKQTQPQE 503 GRS K+ + E Sbjct: 305 GRSRPVKRNEENE 317
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 36.2 bits (82), Expect = 0.067 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 4/144 (2%) Frame = +3 Query: 63 YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDN 242 YG V F +Q +A+T G + + +T E P+ + + Sbjct: 378 YGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIGPETESENEFRPLD----ERIDEFH 433 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHV---KIPVGKRCGFVQYANRPSAEXXX 413 T+F+G L+ T L+ +F +GE+V + K+ + F+QY + S Sbjct: 434 PKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAI 493 Query: 414 XXXXXXXXXXXNVRLSWGRS-PSN 482 ++L +G+S P+N Sbjct: 494 KKMDGEYLGNNRLKLGFGKSMPTN 517
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 36.2 bits (82), Expect = 0.067 Identities = 26/121 (21%), Positives = 54/121 (44%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + K++ DK GYGF+ + ++ + + E+NG + + I RK Sbjct: 218 YGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKELNGRTVNGSTLFINYHVERKE- 276 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 +ER+ + +++ND N +F+G L P + ++ + P + +K + K Sbjct: 277 --RERIHWDHVK----ENNNDDNFRCLFIGNL-PYHNPEKVETLITPKEVIEVIKKELSK 329 Query: 363 R 365 + Sbjct: 330 K 330
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 36.2 bits (82), Expect = 0.067 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Frame = +3 Query: 30 VTDKMTMRSKG--YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVP 203 V K R +G Y F+KF + RA M+G P++IG TT Sbjct: 39 VVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTT------- 91 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQY 383 ++VGGL PN + AL + F +G + + G ++QY Sbjct: 92 ------------------RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQY 133 Query: 384 ANRPSAE 404 + +A+ Sbjct: 134 ESLDAAQ 140 Score = 31.2 bits (69), Expect = 2.2 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = +3 Query: 237 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYG--EVVHVKIPV---GKRCGFVQYANRPSA 401 D+ +F+G LD +V+E L++ F YG E V +K P G F+++ N A Sbjct: 4 DDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMA 63 Query: 402 EXXXXXXXXXXXXXXNVRLSWGRS 473 +++ +G++ Sbjct: 64 HRAKVAMSGRVIGRNPIKIGYGKA 87
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 35.8 bits (81), Expect = 0.088 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 T+FVG L+ VTE+ L ++F G V+ VKIP K Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK 45
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 35.8 bits (81), Expect = 0.088 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 5/98 (5%) Frame = +3 Query: 57 KGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTG-----VQERVPIPNTNT 221 +G+GFV+F DP + A+ E++G S + I A R G +R+ + + Sbjct: 37 RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGN 96 Query: 222 QGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV 335 + N + V L V+ LK GEV Sbjct: 97 DRRKCSTCKNRNRLIVENLSSRVSWQDLKDFMRQAGEV 134
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 35.8 bits (81), Expect = 0.088 Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 37/152 (24%) Frame = +3 Query: 45 TMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI--------------GPAANRK-- 176 TM+ +G FV F + A+ ++ G P +PMRI G A+++ Sbjct: 45 TMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKK 104 Query: 177 --------------TTGVQERVPIPNT-NTQGAQSDND-----PNNTTIFVGGLDPNVTE 296 TT + PN+ NTQG + N P N +F+ L E Sbjct: 105 KEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNE 164 Query: 297 DALKQVFAPYGEVVHVKIPVGKR-CGFVQYAN 389 L +F + V++ G+ FV++ N Sbjct: 165 MMLSMLFNQFPGFKEVRLVPGRHDIAFVEFEN 196
>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)| Length = 531 Score = 35.8 bits (81), Expect = 0.088 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 14/126 (11%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIG-------- 158 Y V+ KV+ +K K V+ D ++ AM+ +NG +P+RI Sbjct: 361 YGDVQRVKVLFNK-----KENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQSVQ 415 Query: 159 -PAANRKTTGVQE---RVPIPNTNTQGAQSDND--PNNTTIFVGGLDPNVTEDALKQVFA 320 P ++ G+ + P+ G+++ + P + T+ + + P+++ED LK +F+ Sbjct: 416 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKILFS 475 Query: 321 PYGEVV 338 G +V Sbjct: 476 SNGGIV 481
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 35.8 bits (81), Expect = 0.088 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK 362 T+FVG L+ VTE+ L ++F G V+ VKIP K Sbjct: 11 TLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK 45
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 35.8 bits (81), Expect = 0.088 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 6/132 (4%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPI 206 VV + T RS+ +GFV + + E AM ++ P A + T ++ V Sbjct: 38 VVVNPQTKRSRCFGFVTYSNVEEADAAM--------AASPH----AVDGNTVELKRAVSR 85 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------ 368 ++ GA + +FVGGL +V E L + F+ +G V +I K+ Sbjct: 86 EDSARPGAHA----KVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGF 141 Query: 369 GFVQYANRPSAE 404 GFV + N +A+ Sbjct: 142 GFVYFQNHDAAD 153
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 35.8 bits (81), Expect = 0.088 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEM 119 + ++ ++V DK+T +SKGY F+ F DP A E+ Sbjct: 130 FGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKEI 168 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 210 NTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI 350 N N D DP T IF+G L ++ E L++ F +GE+ ++I Sbjct: 93 NPNVDPHIKDTDPYRT-IFIGRLPYDLDEIELQKYFVKFGEIEKIRI 138
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 35.8 bits (81), Expect = 0.088 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP 353 TI+VGGL VTE L F P+G++ +++P Sbjct: 7 TIYVGGLADEVTERLLNNAFIPFGDIADIQMP 38
>NAB3_YEAST (P38996) Nuclear polyadenylated RNA-binding protein 3| Length = 802 Score = 35.8 bits (81), Expect = 0.088 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = +3 Query: 240 NDPNNTTIFVGGLD-PNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPS 398 N P + +F+G L NV+++ L ++F+PYG ++ + I GF+Q+ N S Sbjct: 325 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQS 376
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 35.8 bits (81), Expect = 0.088 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ V D + SKG+ +V++ +P +A E++G R M I PA +KT Sbjct: 324 FGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILPATAKKTY 383 Query: 183 GVQE 194 + E Sbjct: 384 KIDE 387 Score = 35.0 bits (79), Expect = 0.15 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +3 Query: 252 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 NT +FV GL P T D L+ F+ ++ + +R GFV + + +A+ Sbjct: 3 NTRVFVSGLPPTFTNDQLRMHFSSRFQITDAHVLPKRRIGFVGFKSSEAAQ 53 Score = 33.9 bits (76), Expect = 0.33 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Frame = +3 Query: 54 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQ 233 S G+GFV F + A+ M+G + + A+N+ +ER A+ Sbjct: 642 SMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVR-ASNKAMDAAEERRREDTAKKIAAR 700 Query: 234 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP-----VGKRCGFVQYANRPS 398 T I + L T+ ++ +F YG++ V++P + GF + + Sbjct: 701 ------RTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSARE 754 Query: 399 AE 404 AE Sbjct: 755 AE 756 Score = 33.5 bits (75), Expect = 0.44 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = +3 Query: 228 AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 A + NT I V V D L+++F PYG++ + +P V++A A+ Sbjct: 475 AFKQRERGNTAILVKNFSYGVKVDDLRKLFEPYGQITRLLMPPSGTIAIVEFARPDEAQ 533
>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 598 Score = 35.4 bits (80), Expect = 0.11 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 207 PNTNTQG-AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 PN N A + P T+FVGGL N TE + +VF GE++ ++ Sbjct: 82 PNPNLPPPATRERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR 129
>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 610 Score = 35.4 bits (80), Expect = 0.11 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = +3 Query: 207 PNTNTQG-AQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVK 347 PN N A + P T+FVGGL N TE + +VF GE++ ++ Sbjct: 111 PNPNLPPPATRERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEIIAIR 158
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 35.4 bits (80), Expect = 0.11 Identities = 22/89 (24%), Positives = 35/89 (39%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 R+KG+ F++F + AM N R +R+ + QG Sbjct: 448 RAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGG--------------GPQGG 493 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVF 317 + T+FV GL + TE+ LK+ F Sbjct: 494 GRGGSAQSKTLFVRGLSEDTTEETLKEAF 522 Score = 33.1 bits (74), Expect = 0.57 Identities = 30/160 (18%), Positives = 65/160 (40%), Gaps = 4/160 (2%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + + K ++ T K +KG +V+F + E +A+ E G R + + + Sbjct: 344 FENAKDIRIPTGK-DGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQN 402 Query: 183 GVQERVPIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPV-- 356 + N +G + D+ + V L + TED+L++VF + ++IP Sbjct: 403 ---------SGNKKGPEGDSK----VLVVNNLSYSATEDSLREVFE---KATSIRIPQNQ 446 Query: 357 --GKRCGFVQYANRPSAEXXXXXXXXXXXXXXNVRLSWGR 470 K F+++++ A+ ++RL + + Sbjct: 447 GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 486 Score = 30.8 bits (68), Expect = 2.8 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 116 A++VTD+ T SKG+GFV F E A+A E Sbjct: 528 ARIVTDRDTGASKGFGFVDF-STAEDAKAAKE 558
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 35.4 bits (80), Expect = 0.11 Identities = 24/89 (26%), Positives = 39/89 (43%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 R KGY FV+F + A+ N R +R+ ++ G N N +G Sbjct: 496 RPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKG--------NMNARGG 547 Query: 231 QSDNDPNNTTIFVGGLDPNVTEDALKQVF 317 + + T+FV GL + TE+ L++ F Sbjct: 548 FNQQ---SKTLFVRGLSEDTTEETLRESF 573 Score = 33.9 bits (76), Expect = 0.33 Identities = 17/32 (53%), Positives = 22/32 (68%) Frame = +3 Query: 21 AKVVTDKMTMRSKGYGFVKFGDPTEQARAMTE 116 A++VTD+ T SKG+GFV F P E A+A E Sbjct: 579 ARIVTDRDTGSSKGFGFVDFSSP-EDAKAAKE 609 Score = 30.0 bits (66), Expect = 4.8 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Frame = +3 Query: 54 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQ 233 SK +G+V F + +A+ ++NG +K G++ ++ + + Sbjct: 320 SKRFGYVDFLSAEDMDKAL-QLNG---------------KKLMGLEIKLEKAKSKESLKE 363 Query: 234 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV--VHVKIPVGKRCGFVQYANRPSAE 404 + + + T+FV L VTED +K VF EV V K K ++++ AE Sbjct: 364 NKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAE 422
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 35.4 bits (80), Expect = 0.11 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 5/121 (4%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D T RS+G+GFV + E +M S+RP ++ G K +E Sbjct: 58 VMRDPQTKRSRGFGFVTYSCVEEVDASM--------SARPHKVDGRVVEPKRAVSREDSA 109 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRCG 371 P + + IFVGG+ + E L+ F YG++ +++ GK+ G Sbjct: 110 RPGAHLTVKK---------IFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRG 160 Query: 372 F 374 F Sbjct: 161 F 161 Score = 33.5 bits (75), Expect = 0.44 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Frame = +3 Query: 207 PNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV---VHVKIPVGKRC--- 368 P+++ QG + +F+GGL T+D+L++ F +G++ V ++ P KR Sbjct: 11 PSSDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGF 70 Query: 369 GFVQYA 386 GFV Y+ Sbjct: 71 GFVTYS 76
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 35.4 bits (80), Expect = 0.11 Identities = 21/70 (30%), Positives = 33/70 (47%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGA 230 R +G+GFV F + +Q+RA+ EMNG + + A R+ E N N Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENE--KNENEPIE 313 Query: 231 QSDNDPNNTT 260 S++ P N + Sbjct: 314 ASESAPTNVS 323
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 35.0 bits (79), Expect = 0.15 Identities = 17/48 (35%), Positives = 27/48 (56%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 IFVG L PN T + ++ +F+ YG++ I K GFV ++ A+ Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV--KNFGFVHMDSKSEAD 49
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 35.0 bits (79), Expect = 0.15 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +3 Query: 240 NDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYAN 389 N + +F+G L + E +++ F +G++ H+KI K FV + N Sbjct: 294 NTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLN 343 Score = 29.3 bits (64), Expect = 8.2 Identities = 12/47 (25%), Positives = 24/47 (51%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 401 ++ + ++T + L+ + YGE+ +K + GFV Y N +A Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNA 548
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 35.0 bits (79), Expect = 0.15 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Frame = +3 Query: 234 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC------GFVQYANRP 395 S D T IFVGGL + T+ +L++ F +G++ + ++ GFV A+R Sbjct: 4 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63 Query: 396 SAE 404 +AE Sbjct: 64 AAE 66 Score = 34.3 bits (77), Expect = 0.26 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMN 122 + ++ A V+TD+ T +S+GYGFV D RA + N Sbjct: 34 FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 73
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 35.0 bits (79), Expect = 0.15 Identities = 29/107 (27%), Positives = 43/107 (40%) Frame = +3 Query: 57 KGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQS 236 K YGFV + A+ +NG + +++ A +R+ PNT T Sbjct: 40 KNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRA---------PNTPT----- 85 Query: 237 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFV 377 T IFVG L ++++F YG VV I + GFV Sbjct: 86 ------TKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--RNYGFV 124
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 34.7 bits (78), Expect = 0.20 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D T RS+G+GFV + E AM +RP ++ G K +E Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMC--------ARPHKVDGRVVEPKRAVSREDSV 117 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRCG 371 P + + IFVGG+ + E L+ F YG++ +++ GK+ G Sbjct: 118 KPGAHLTVKK---------IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRG 168 Query: 372 F 374 F Sbjct: 169 F 169
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 34.7 bits (78), Expect = 0.20 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D T RS+G+GFV + E AM +RP ++ G K +E Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMC--------ARPHKVDGRVVEPKRAVSREDSV 117 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRCG 371 P + + IFVGG+ + E L+ F YG++ +++ GK+ G Sbjct: 118 KPGAHLTVKK---------IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRG 168 Query: 372 F 374 F Sbjct: 169 F 169
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 34.7 bits (78), Expect = 0.20 Identities = 18/66 (27%), Positives = 30/66 (45%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + +V DK T +SKG+ F+ + D A+ NG+ R +R+ +N + Sbjct: 59 YGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNYRAP 118 Query: 183 GVQERV 200 E V Sbjct: 119 QESEDV 124 Score = 34.3 bits (77), Expect = 0.26 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 IFVGGL +TE + VF+ YGE+V++ + K+ G Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTG 74
>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding protein PPTB-1) Length = 531 Score = 34.7 bits (78), Expect = 0.20 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 14/114 (12%) Frame = +3 Query: 39 KMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIG---------PAANRKTTGVQ 191 K+ K V+ D + AM+ +NG +P+RI P ++ G+ Sbjct: 368 KILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT 427 Query: 192 E---RVPIPNTNTQGAQSDND--PNNTTIFVGGLDPNVTEDALKQVFAPYGEVV 338 + P+ G+++ + P + T+ + + P+V+E+ LK +F+ G VV Sbjct: 428 KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 481
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 34.7 bits (78), Expect = 0.20 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 5/121 (4%) Frame = +3 Query: 27 VVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI-GPAANRKTTGVQERVP 203 V+ D T RS+G+GFV + E AM +RP ++ G K +E Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMC--------ARPHKVDGRVVEPKRAVSREDSV 117 Query: 204 IPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKI----PVGKRCG 371 P + + IFVGG+ + E L+ F YG++ +++ GK+ G Sbjct: 118 KPGAHLTVKK---------IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRG 168 Query: 372 F 374 F Sbjct: 169 F 169
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 34.7 bits (78), Expect = 0.20 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = +3 Query: 237 DNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKR-----CGFVQYANRPSA 401 D+ N T+F+G LD VTE L++ F +G + V I R GF+++ N + Sbjct: 368 DDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLDMS 427 Query: 402 EXXXXXXXXXXXXXXNVRLSWGRS 473 +++ +G++ Sbjct: 428 HRAKLAMSGKIIIRNPIKIGYGKA 451 Score = 32.7 bits (73), Expect = 0.74 Identities = 28/113 (24%), Positives = 43/113 (38%) Frame = +3 Query: 63 YGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDN 242 YGF+KF + RA M+G P++IG TT Sbjct: 416 YGFLKFENLDMSHRAKLAMSGKIIIRNPIKIGYGKATPTT-------------------- 455 Query: 243 DPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSA 401 ++VGGL P V AL + F +G + + G ++QY + +A Sbjct: 456 -----RLWVGGLGPWVPLAALAREFDRFGTIRTIDYRKGDSWAYIQYESLDAA 503
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 34.7 bits (78), Expect = 0.20 Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 10/109 (9%) Frame = +3 Query: 87 PTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTT-- 260 P Q R ++ RP R ++ +R P P G Q D +P Sbjct: 278 PASQPRPESKPESQIPPQRPQRDQRVREQRINIPPQRGPRP-IREAGEQGDIEPRRMVRH 336 Query: 261 -----IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRC---GFVQY 383 +F+G L V + LK F YG VV ++I G + GFV + Sbjct: 337 PDSHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVF 385
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 34.7 bits (78), Expect = 0.20 Identities = 19/58 (32%), Positives = 33/58 (56%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRK 176 Y +VK K++TD+ T SKGYGFV F D + + + + + +++GPA ++ Sbjct: 59 YGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVESQ--ISVHGKRLKLGPAIRKQ 113 Score = 34.7 bits (78), Expect = 0.20 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Frame = +3 Query: 258 TIFVGGLDPNVTEDALKQVFAPYGEVVHVKI-----PVGKRCGFVQY 383 T+FVGG+D + E ++ F YG V VKI V K GFV + Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSF 83
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 34.3 bits (77), Expect = 0.26 Identities = 17/64 (26%), Positives = 30/64 (46%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 + ++ V D SKG+ +V++ DP A ++G R + I PA+ +KT Sbjct: 318 FGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNLDGKIFQGRLLHILPASQKKTY 377 Query: 183 GVQE 194 + E Sbjct: 378 KLDE 381 Score = 34.3 bits (77), Expect = 0.26 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +3 Query: 252 NTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCGFVQYANRPSAE 404 +T +FV GL P +T D LK+ F V + +R GFV + + +A+ Sbjct: 3 STRVFVSGLPPTLTNDQLKKHFETRFHVTDAHVLPKRRIGFVGFKSSEAAQ 53 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 5/122 (4%) Frame = +3 Query: 54 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQ 233 S G+GF F + A+ MNG + + A+++ +ER A+ Sbjct: 637 SMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVR-ASHKGMDAAEERRKEDTAKKIAAR 695 Query: 234 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP-----VGKRCGFVQYANRPS 398 T I + L T+ ++ +F YG++ V++P + GF + + Sbjct: 696 ------RTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSARE 749 Query: 399 AE 404 AE Sbjct: 750 AE 751 Score = 31.6 bits (70), Expect = 1.7 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 9/133 (6%) Frame = +3 Query: 30 VTDKMTMRSKGYGFVKFGDPTEQ---ARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERV 200 V+D +RSK + D EQ A N P + + A + + + Sbjct: 217 VSDSDWLRSKTSRLLGLLDEDEQETFASPAAATNPTPIINSNVEKPEAESPEKPAESDLT 276 Query: 201 PIPNTNTQGAQSDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEV--VHV----KIPVGK 362 P +N + +FV L E L+ VF+P+G++ +HV + K Sbjct: 277 KAPTAAEVDTNIENIRISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSK 336 Query: 363 RCGFVQYANRPSA 401 +VQYA+ +A Sbjct: 337 GFAYVQYADPDAA 349
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 34.3 bits (77), Expect = 0.26 Identities = 18/65 (27%), Positives = 32/65 (49%) Frame = +3 Query: 9 SVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGV 188 S+ ++V DKMT KG+G+V F + T+ ++N R +R+ + N++ Sbjct: 312 SIMAVRIVRDKMTGIGKGFGYVLF-ENTDSVHLALKLNNSELMGRKLRVMRSVNKEKFKQ 370 Query: 189 QERVP 203 Q P Sbjct: 371 QNSNP 375
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 34.3 bits (77), Expect = 0.26 Identities = 17/66 (25%), Positives = 30/66 (45%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTT 182 Y + +V DK T +SKG+ F+ + D A+ NG+ R +R+ +N + Sbjct: 59 YGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAP 118 Query: 183 GVQERV 200 E + Sbjct: 119 KDSEEI 124 Score = 33.1 bits (74), Expect = 0.57 Identities = 15/37 (40%), Positives = 24/37 (64%) Frame = +3 Query: 261 IFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGKRCG 371 IF+GGL +TE + VF+ YGE+V++ + K+ G Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTG 74
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 34.3 bits (77), Expect = 0.26 Identities = 25/100 (25%), Positives = 47/100 (47%) Frame = +3 Query: 54 SKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQ 233 S G+GFV F + A+ M+G + + + A++R +ER + Sbjct: 644 SMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISV-KASHRGLDAAEER----RREDMAKK 698 Query: 234 SDNDPNNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIP 353 + N T + V L VT+ ++ +F+ YG++V ++IP Sbjct: 699 AANQ--GTKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIP 736 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 249 NNTTIFVGGLDPNVTEDALKQVFAPYG-EVVHVKIPVGKRCGFVQYANRPSA 401 +++ IFV L P +TE ++ F+ G +V VK+ + GFV Y + A Sbjct: 3 SSSRIFVKNLPPTITEAEFRKHFSAEGRQVTDVKLIPARHIGFVGYKSAEDA 54
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 34.3 bits (77), Expect = 0.26 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Frame = +3 Query: 249 NNTTIFVGGLDPNVTEDALKQVFAPYGEVVHVKIPVGK------RCGFVQYANRPSAE 404 + T++VG +DP +T++ L ++F V+ +K P K F+++ N+ A+ Sbjct: 7 SGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQ 64
>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)| Length = 523 Score = 33.9 bits (76), Expect = 0.33 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Frame = +3 Query: 99 ARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNTQGAQSDNDPNNTTIFVGGL 278 A A + G+ S+ P +GP ++ V R+ IP + P N+ + V L Sbjct: 285 AIAFPQAAGLSVSAVPGALGPLT-LTSSAVSGRMAIPGAS-------GIPGNSVLLVTNL 336 Query: 279 DPN-VTEDALKQVFAPYGEVVHVKIPVGKR-CGFVQYANRPSAE 404 +P+ +T L +F YG+V VKI K+ VQ A+ A+ Sbjct: 337 NPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQ 380
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 33.9 bits (76), Expect = 0.33 Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 14/114 (12%) Frame = +3 Query: 39 KMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIG---------PAANRKTTGVQ 191 K+ K V+ D ++ AM+ +NG + +RI P ++ G+ Sbjct: 392 KILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREGQEDQGLT 451 Query: 192 ERV---PIPNTNTQGAQSDND--PNNTTIFVGGLDPNVTEDALKQVFAPYGEVV 338 + P+ G+++ + P + T+ + + P+V+ED LK +F+ G VV Sbjct: 452 KDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGGVV 505
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 Y V + D+ T S+G+ FV+F D + AM M+G R +R+ Sbjct: 36 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 Y V + D+ T S+G+ FV+F D + AM M+G R +R+ Sbjct: 36 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 Y V + D+ T S+G+ FV+F D + AM M+G R +R+ Sbjct: 36 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 Y V + D+ T S+G+ FV+F D + AM M+G R +R+ Sbjct: 36 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 86
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 33.9 bits (76), Expect = 0.33 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 3 YPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRI 155 Y V + D+ T S+G+ FV+F D + AM M+G R +R+ Sbjct: 37 YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 87
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 33.9 bits (76), Expect = 0.33 Identities = 37/134 (27%), Positives = 50/134 (37%), Gaps = 30/134 (22%) Frame = +3 Query: 51 RSKGYGFVKFGDPTEQARAMTEMNGMPCSSRPMRIGPAANRKTTGVQERVPIPNTNT--Q 224 +S+G G V+F D +A+ MN S RP+ I G R + T T Q Sbjct: 130 KSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI----KEDPDGENARRALQRTGTSFQ 185 Query: 225 GAQSD--------------NDPN--------------NTTIFVGGLDPNVTEDALKQVFA 320 G+ + N+PN +TIFV LD V LK+VF+ Sbjct: 186 GSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFS 245 Query: 321 PYGEVVHVKIPVGK 362 G V I K Sbjct: 246 IAGTVKRADIKEDK 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,907,133 Number of Sequences: 219361 Number of extensions: 1628127 Number of successful extensions: 6064 Number of sequences better than 10.0: 373 Number of HSP's better than 10.0 without gapping: 5067 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5938 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
