ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags27d03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 236 bits (119), Expect = 1e-58 Identities = 263/311 (84%) Strand = Plus / Plus Query: 495 ggggacagaagagctgatatggaaatgcaaacgccccaccttatccacagagagggaaga 554 ||||| ||||||| ||| ||| | || | ||||||||||||||| || |||| |||||| Sbjct: 8165313 ggggatagaagagttgagatgaagatcccaacgccccaccttattcatggagacggaaga 8165372 Query: 555 gttgacatgaacatggcagcccctcacttgatgcagagggagagaagagtagacgtgaat 614 ||||||||||||||||| |||||| ||||||||||||||| |||||||| ||| |||| Sbjct: 8165373 attgacatgaacatggcatcccctctcttgatgcagagggacagaagagttgacatgaac 8165432 Query: 615 atggcgtctcctcacctgatccatggggacagaagagttgatatgaacctggggtcgcca 674 ||||| || || ||| |||| || |||||||||||||||||||||||| ||| || ||| Sbjct: 8165433 atggcctccccacacatgatacagggggacagaagagttgatatgaacttggcatcacca 8165492 Query: 675 cacttcatacacagcgacagaagagttgatatgaacatggcatcccctcatctgatacat 734 ||||| ||||| ||||||||||| |||||||||||| ||||||| | ||||||||||| Sbjct: 8165493 cactttatacaaagcgacagaagggttgatatgaacctggcatcttcgcatctgatacaa 8165552 Query: 735 ggggacaggagagtcgatatgaacatggcatcaccacacctgatacacggagacagaaga 794 |||||||| ||||| |||||||| ||| |||| || ||| ||||||| || |||| ||| Sbjct: 8165553 ggggacagaagagttgatatgaatatgacatcccctcacttgatacaaggtgacaccaga 8165612 Query: 795 gttgatatgaa 805 || |||||||| Sbjct: 8165613 gtggatatgaa 8165623 Score = 178 bits (90), Expect = 2e-41 Identities = 231/278 (83%) Strand = Plus / Plus Query: 141 agagatttgagcatttttgattatctgtacgtgtgtggccatgaatattttgaagatgtt 200 ||||||||||||||||| || |||| || || ||||||| || ||||| |||||||| Sbjct: 8164953 agagatttgagcattttcaatgatctctatgtccgtggccacgagtatttagaagatgtc 8165012 Query: 201 atcgatattggggctagagaacctgagctgaaggagtttgtgttgtctgctatgaaagag 260 || || ||||| || |||||||||||||| || |||||||||||| | | |||||| || Sbjct: 8165013 attgacattggagccagagaacctgagctcaaagagtttgtgttgacagttatgaaggaa 8165072 Query: 261 gcgaaggacaagctagtaaggcctggccagacccagcaaggtgatcagcgggttgatgta 320 ||||||||||| ||||| ||||||| ||| | || |||| ||||||||||||||||||| Sbjct: 8165073 gcgaaggacaaactagttaggcctgaccatattcatcaagctgatcagcgggttgatgta 8165132 Query: 321 aatatggcagtaactggtcaggtatccgctgatagaagagttgatgtgaacatggcatca 380 |||||| |||| ||||| || || ||||| |||||| |||| ||||||||||| ||||| Sbjct: 8165133 aatatgtcagtgactggccaagtgtccgcagatagaggagtagatgtgaacatttcatca 8165192 Query: 381 aacaccacatccatcattcacagggacagaagggttga 418 || | ||||||| | ||||| | |||||||||||||| Sbjct: 8165193 aatagcacatccctgattcagggagacagaagggttga 8165230 Score = 145 bits (73), Expect = 3e-31 Identities = 184/220 (83%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 640 gggacagaagagttgatatgaacctggggtcgccacacttcatacacagcgacagaagag 699 |||||||||||||||| |||||| ||| || |||||| | ||||| | |||||||||| Sbjct: 8165410 gggacagaagagttgacatgaacatggcctccccacacatgatacagggggacagaagag 8165469 Query: 700 ttgatatgaacatggcatcccctcatctgatacatggggacaggagagtcgatatgaaca 759 ||||||||||| ||||||| || || | ||||| | ||||| || || ||||||||| Sbjct: 8165470 ttgatatgaacttggcatcaccacactttatacaaagcgacagaagggttgatatgaacc 8165529 Query: 760 tggcatcaccacacctgatacacggagacagaagagttgatatgaacatgacattccctc 819 ||||||| | || |||||||| || |||||||||||||||||||| ||||||| ||||| Sbjct: 8165530 tggcatcttcgcatctgatacaaggggacagaagagttgatatgaatatgacatcccctc 8165589 Query: 820 acctgatacacggngacaccaagagtggatatgaacatgg 859 || ||||||| || |||||| |||||||||||||| |||| Sbjct: 8165590 acttgatacaaggtgacacc-agagtggatatgaatatgg 8165628 Score = 83.8 bits (42), Expect = 9e-13 Identities = 64/70 (91%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 7 ctttgcagcc-tgctctgtctgttctgaagcaagagaatgtgttgatgctgccatcaaag 65 |||||||||| |||||| || ||||| ||||||||||||||||| ||||||||||||||| Sbjct: 8164818 ctttgcagccatgctctctccgttcttaagcaagagaatgtgttaatgctgccatcaaag 8164877 Query: 66 tacatcctca 75 || ||||||| Sbjct: 8164878 tatatcctca 8164887
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 236 bits (119), Expect = 1e-58 Identities = 263/311 (84%) Strand = Plus / Plus Query: 495 ggggacagaagagctgatatggaaatgcaaacgccccaccttatccacagagagggaaga 554 ||||| ||||||| ||| ||| | || | ||||||||||||||| || |||| |||||| Sbjct: 8163148 ggggatagaagagttgagatgaagatcccaacgccccaccttattcatggagacggaaga 8163207 Query: 555 gttgacatgaacatggcagcccctcacttgatgcagagggagagaagagtagacgtgaat 614 ||||||||||||||||| |||||| ||||||||||||||| |||||||| ||| |||| Sbjct: 8163208 attgacatgaacatggcatcccctctcttgatgcagagggacagaagagttgacatgaac 8163267 Query: 615 atggcgtctcctcacctgatccatggggacagaagagttgatatgaacctggggtcgcca 674 ||||| || || ||| |||| || |||||||||||||||||||||||| ||| || ||| Sbjct: 8163268 atggcctccccacacatgatacagggggacagaagagttgatatgaacttggcatcacca 8163327 Query: 675 cacttcatacacagcgacagaagagttgatatgaacatggcatcccctcatctgatacat 734 ||||| ||||| ||||||||||| |||||||||||| ||||||| | ||||||||||| Sbjct: 8163328 cactttatacaaagcgacagaagggttgatatgaacctggcatcttcgcatctgatacaa 8163387 Query: 735 ggggacaggagagtcgatatgaacatggcatcaccacacctgatacacggagacagaaga 794 |||||||| ||||| |||||||| ||| |||| || ||| ||||||| || |||| ||| Sbjct: 8163388 ggggacagaagagttgatatgaatatgacatcccctcacttgatacaaggtgacaccaga 8163447 Query: 795 gttgatatgaa 805 || |||||||| Sbjct: 8163448 gtggatatgaa 8163458 Score = 178 bits (90), Expect = 2e-41 Identities = 231/278 (83%) Strand = Plus / Plus Query: 141 agagatttgagcatttttgattatctgtacgtgtgtggccatgaatattttgaagatgtt 200 ||||||||||||||||| || |||| || || ||||||| || ||||| |||||||| Sbjct: 8162788 agagatttgagcattttcaatgatctctatgtccgtggccacgagtatttagaagatgtc 8162847 Query: 201 atcgatattggggctagagaacctgagctgaaggagtttgtgttgtctgctatgaaagag 260 || || ||||| || |||||||||||||| || |||||||||||| | | |||||| || Sbjct: 8162848 attgacattggagccagagaacctgagctcaaagagtttgtgttgacagttatgaaggaa 8162907 Query: 261 gcgaaggacaagctagtaaggcctggccagacccagcaaggtgatcagcgggttgatgta 320 ||||||||||| ||||| ||||||| ||| | || |||| ||||||||||||||||||| Sbjct: 8162908 gcgaaggacaaactagttaggcctgaccatattcatcaagctgatcagcgggttgatgta 8162967 Query: 321 aatatggcagtaactggtcaggtatccgctgatagaagagttgatgtgaacatggcatca 380 |||||| |||| ||||| || || ||||| |||||| |||| ||||||||||| ||||| Sbjct: 8162968 aatatgtcagtgactggccaagtgtccgcagatagaggagtagatgtgaacatttcatca 8163027 Query: 381 aacaccacatccatcattcacagggacagaagggttga 418 || | ||||||| | ||||| | |||||||||||||| Sbjct: 8163028 aatagcacatccctgattcagggagacagaagggttga 8163065 Score = 145 bits (73), Expect = 3e-31 Identities = 184/220 (83%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 640 gggacagaagagttgatatgaacctggggtcgccacacttcatacacagcgacagaagag 699 |||||||||||||||| |||||| ||| || |||||| | ||||| | |||||||||| Sbjct: 8163245 gggacagaagagttgacatgaacatggcctccccacacatgatacagggggacagaagag 8163304 Query: 700 ttgatatgaacatggcatcccctcatctgatacatggggacaggagagtcgatatgaaca 759 ||||||||||| ||||||| || || | ||||| | ||||| || || ||||||||| Sbjct: 8163305 ttgatatgaacttggcatcaccacactttatacaaagcgacagaagggttgatatgaacc 8163364 Query: 760 tggcatcaccacacctgatacacggagacagaagagttgatatgaacatgacattccctc 819 ||||||| | || |||||||| || |||||||||||||||||||| ||||||| ||||| Sbjct: 8163365 tggcatcttcgcatctgatacaaggggacagaagagttgatatgaatatgacatcccctc 8163424 Query: 820 acctgatacacggngacaccaagagtggatatgaacatgg 859 || ||||||| || |||||| |||||||||||||| |||| Sbjct: 8163425 acttgatacaaggtgacacc-agagtggatatgaatatgg 8163463 Score = 83.8 bits (42), Expect = 9e-13 Identities = 64/70 (91%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 7 ctttgcagcc-tgctctgtctgttctgaagcaagagaatgtgttgatgctgccatcaaag 65 |||||||||| |||||| || ||||| ||||||||||||||||| ||||||||||||||| Sbjct: 8162653 ctttgcagccatgctctctccgttcttaagcaagagaatgtgttaatgctgccatcaaag 8162712 Query: 66 tacatcctca 75 || ||||||| Sbjct: 8162713 tatatcctca 8162722
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 236 bits (119), Expect = 1e-58 Identities = 263/311 (84%) Strand = Plus / Plus Query: 495 ggggacagaagagctgatatggaaatgcaaacgccccaccttatccacagagagggaaga 554 ||||| ||||||| ||| ||| | || | ||||||||||||||| || |||| |||||| Sbjct: 96743 ggggatagaagagttgagatgaagatcccaacgccccaccttattcatggagacggaaga 96802 Query: 555 gttgacatgaacatggcagcccctcacttgatgcagagggagagaagagtagacgtgaat 614 ||||||||||||||||| |||||| ||||||||||||||| |||||||| ||| |||| Sbjct: 96803 attgacatgaacatggcatcccctctcttgatgcagagggacagaagagttgacatgaac 96862 Query: 615 atggcgtctcctcacctgatccatggggacagaagagttgatatgaacctggggtcgcca 674 ||||| || || ||| |||| || |||||||||||||||||||||||| ||| || ||| Sbjct: 96863 atggcctccccacacatgatacagggggacagaagagttgatatgaacttggcatcacca 96922 Query: 675 cacttcatacacagcgacagaagagttgatatgaacatggcatcccctcatctgatacat 734 ||||| ||||| ||||||||||| |||||||||||| ||||||| | ||||||||||| Sbjct: 96923 cactttatacaaagcgacagaagggttgatatgaacctggcatcttcgcatctgatacaa 96982 Query: 735 ggggacaggagagtcgatatgaacatggcatcaccacacctgatacacggagacagaaga 794 |||||||| ||||| |||||||| ||| |||| || ||| ||||||| || |||| ||| Sbjct: 96983 ggggacagaagagttgatatgaatatgacatcccctcacttgatacaaggtgacaccaga 97042 Query: 795 gttgatatgaa 805 || |||||||| Sbjct: 97043 gtggatatgaa 97053 Score = 178 bits (90), Expect = 2e-41 Identities = 231/278 (83%) Strand = Plus / Plus Query: 141 agagatttgagcatttttgattatctgtacgtgtgtggccatgaatattttgaagatgtt 200 ||||||||||||||||| || |||| || || ||||||| || ||||| |||||||| Sbjct: 96383 agagatttgagcattttcaatgatctctatgtccgtggccacgagtatttagaagatgtc 96442 Query: 201 atcgatattggggctagagaacctgagctgaaggagtttgtgttgtctgctatgaaagag 260 || || ||||| || |||||||||||||| || |||||||||||| | | |||||| || Sbjct: 96443 attgacattggagccagagaacctgagctcaaagagtttgtgttgacagttatgaaggaa 96502 Query: 261 gcgaaggacaagctagtaaggcctggccagacccagcaaggtgatcagcgggttgatgta 320 ||||||||||| ||||| ||||||| ||| | || |||| ||||||||||||||||||| Sbjct: 96503 gcgaaggacaaactagttaggcctgaccatattcatcaagctgatcagcgggttgatgta 96562 Query: 321 aatatggcagtaactggtcaggtatccgctgatagaagagttgatgtgaacatggcatca 380 |||||| |||| ||||| || || ||||| |||||| |||| ||||||||||| ||||| Sbjct: 96563 aatatgtcagtgactggccaagtgtccgcagatagaggagtagatgtgaacatttcatca 96622 Query: 381 aacaccacatccatcattcacagggacagaagggttga 418 || | ||||||| | ||||| | |||||||||||||| Sbjct: 96623 aatagcacatccctgattcagggagacagaagggttga 96660 Score = 145 bits (73), Expect = 3e-31 Identities = 184/220 (83%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 640 gggacagaagagttgatatgaacctggggtcgccacacttcatacacagcgacagaagag 699 |||||||||||||||| |||||| ||| || |||||| | ||||| | |||||||||| Sbjct: 96840 gggacagaagagttgacatgaacatggcctccccacacatgatacagggggacagaagag 96899 Query: 700 ttgatatgaacatggcatcccctcatctgatacatggggacaggagagtcgatatgaaca 759 ||||||||||| ||||||| || || | ||||| | ||||| || || ||||||||| Sbjct: 96900 ttgatatgaacttggcatcaccacactttatacaaagcgacagaagggttgatatgaacc 96959 Query: 760 tggcatcaccacacctgatacacggagacagaagagttgatatgaacatgacattccctc 819 ||||||| | || |||||||| || |||||||||||||||||||| ||||||| ||||| Sbjct: 96960 tggcatcttcgcatctgatacaaggggacagaagagttgatatgaatatgacatcccctc 97019 Query: 820 acctgatacacggngacaccaagagtggatatgaacatgg 859 || ||||||| || |||||| |||||||||||||| |||| Sbjct: 97020 acttgatacaaggtgacacc-agagtggatatgaatatgg 97058 Score = 83.8 bits (42), Expect = 9e-13 Identities = 64/70 (91%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 7 ctttgcagcc-tgctctgtctgttctgaagcaagagaatgtgttgatgctgccatcaaag 65 |||||||||| |||||| || ||||| ||||||||||||||||| ||||||||||||||| Sbjct: 96248 ctttgcagccatgctctctccgttcttaagcaagagaatgtgttaatgctgccatcaaag 96307 Query: 66 tacatcctca 75 || ||||||| Sbjct: 96308 tatatcctca 96317
>dbj|AK101625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052M07, full insert sequence Length = 3187 Score = 236 bits (119), Expect = 1e-58 Identities = 263/311 (84%) Strand = Plus / Plus Query: 495 ggggacagaagagctgatatggaaatgcaaacgccccaccttatccacagagagggaaga 554 ||||| ||||||| ||| ||| | || | ||||||||||||||| || |||| |||||| Sbjct: 2484 ggggatagaagagttgagatgaagatcccaacgccccaccttattcatggagacggaaga 2543 Query: 555 gttgacatgaacatggcagcccctcacttgatgcagagggagagaagagtagacgtgaat 614 ||||||||||||||||| |||||| ||||||||||||||| |||||||| ||| |||| Sbjct: 2544 attgacatgaacatggcatcccctctcttgatgcagagggacagaagagttgacatgaac 2603 Query: 615 atggcgtctcctcacctgatccatggggacagaagagttgatatgaacctggggtcgcca 674 ||||| || || ||| |||| || |||||||||||||||||||||||| ||| || ||| Sbjct: 2604 atggcctccccacacatgatacagggggacagaagagttgatatgaacttggcatcacca 2663 Query: 675 cacttcatacacagcgacagaagagttgatatgaacatggcatcccctcatctgatacat 734 ||||| ||||| ||||||||||| |||||||||||| ||||||| | ||||||||||| Sbjct: 2664 cactttatacaaagcgacagaagggttgatatgaacctggcatcttcgcatctgatacaa 2723 Query: 735 ggggacaggagagtcgatatgaacatggcatcaccacacctgatacacggagacagaaga 794 |||||||| ||||| |||||||| ||| |||| || ||| ||||||| || |||| ||| Sbjct: 2724 ggggacagaagagttgatatgaatatgacatcccctcacttgatacaaggtgacaccaga 2783 Query: 795 gttgatatgaa 805 || |||||||| Sbjct: 2784 gtggatatgaa 2794 Score = 178 bits (90), Expect = 2e-41 Identities = 231/278 (83%) Strand = Plus / Plus Query: 141 agagatttgagcatttttgattatctgtacgtgtgtggccatgaatattttgaagatgtt 200 ||||||||||||||||| || |||| || || ||||||| || ||||| |||||||| Sbjct: 2124 agagatttgagcattttcaatgatctctatgtccgtggccacgagtatttagaagatgtc 2183 Query: 201 atcgatattggggctagagaacctgagctgaaggagtttgtgttgtctgctatgaaagag 260 || || ||||| || |||||||||||||| || |||||||||||| | | |||||| || Sbjct: 2184 attgacattggagccagagaacctgagctcaaagagtttgtgttgacagttatgaaggaa 2243 Query: 261 gcgaaggacaagctagtaaggcctggccagacccagcaaggtgatcagcgggttgatgta 320 ||||||||||| ||||| ||||||| ||| | || |||| ||||||||||||||||||| Sbjct: 2244 gcgaaggacaaactagttaggcctgaccatattcatcaagctgatcagcgggttgatgta 2303 Query: 321 aatatggcagtaactggtcaggtatccgctgatagaagagttgatgtgaacatggcatca 380 |||||| |||| ||||| || || ||||| |||||| |||| ||||||||||| ||||| Sbjct: 2304 aatatgtcagtgactggccaagtgtccgcagatagaggagtagatgtgaacatttcatca 2363 Query: 381 aacaccacatccatcattcacagggacagaagggttga 418 || | ||||||| | ||||| | |||||||||||||| Sbjct: 2364 aatagcacatccctgattcagggagacagaagggttga 2401 Score = 145 bits (73), Expect = 3e-31 Identities = 184/220 (83%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 640 gggacagaagagttgatatgaacctggggtcgccacacttcatacacagcgacagaagag 699 |||||||||||||||| |||||| ||| || |||||| | ||||| | |||||||||| Sbjct: 2581 gggacagaagagttgacatgaacatggcctccccacacatgatacagggggacagaagag 2640 Query: 700 ttgatatgaacatggcatcccctcatctgatacatggggacaggagagtcgatatgaaca 759 ||||||||||| ||||||| || || | ||||| | ||||| || || ||||||||| Sbjct: 2641 ttgatatgaacttggcatcaccacactttatacaaagcgacagaagggttgatatgaacc 2700 Query: 760 tggcatcaccacacctgatacacggagacagaagagttgatatgaacatgacattccctc 819 ||||||| | || |||||||| || |||||||||||||||||||| ||||||| ||||| Sbjct: 2701 tggcatcttcgcatctgatacaaggggacagaagagttgatatgaatatgacatcccctc 2760 Query: 820 acctgatacacggngacaccaagagtggatatgaacatgg 859 || ||||||| || |||||| |||||||||||||| |||| Sbjct: 2761 acttgatacaaggtgacacc-agagtggatatgaatatgg 2799 Score = 83.8 bits (42), Expect = 9e-13 Identities = 64/70 (91%), Gaps = 1/70 (1%) Strand = Plus / Plus Query: 7 ctttgcagcc-tgctctgtctgttctgaagcaagagaatgtgttgatgctgccatcaaag 65 |||||||||| |||||| || ||||| ||||||||||||||||| ||||||||||||||| Sbjct: 1989 ctttgcagccatgctctctccgttcttaagcaagagaatgtgttaatgctgccatcaaag 2048 Query: 66 tacatcctca 75 || ||||||| Sbjct: 2049 tatatcctca 2058
>ref|XM_694622.1| PREDICTED: Danio rerio similar to Nucleoprotein TPR (LOC571067), mRNA Length = 3309 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 625 ctcacctgatccatggggacaga 647 ||||||||||||||||||||||| Sbjct: 2522 ctcacctgatccatggggacaga 2500
>gb|AC115766.9| Mus musculus chromosome 1, clone RP23-82I24, complete sequence Length = 225600 Score = 42.1 bits (21), Expect = 3.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 541 acagagagggaagagttgacatgaacatg 569 |||||||||| |||| ||||||||||||| Sbjct: 198384 acagagaggggagagatgacatgaacatg 198412
>gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosome 19, complete sequence Length = 146015 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 tgaacatggcatcaaacacca 387 ||||||||||||||||||||| Sbjct: 70154 tgaacatggcatcaaacacca 70174
>ref|NM_207242.1| Mus musculus NPC1-like 1 (Npc1l1), mRNA Length = 4002 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 cagacccagcaaggtgatcag 308 ||||||||||||||||||||| Sbjct: 3756 cagacccagcaaggtgatcag 3736
>gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete sequence Length = 150117 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 cagagggagagaagagtagac 608 ||||||||||||||||||||| Sbjct: 42353 cagagggagagaagagtagac 42333
>emb|AL607152.21| Mouse DNA sequence from clone RP23-198N14 on chromosome 11, complete sequence Length = 232408 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 cagacccagcaaggtgatcag 308 ||||||||||||||||||||| Sbjct: 21269 cagacccagcaaggtgatcag 21289
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 676 acttcatacacagcgacagaagagt 700 |||| |||||||||||||||||||| Sbjct: 998041 actttatacacagcgacagaagagt 998017
>gb|AC023686.4| Drosophila melanogaster X BAC RP98-30C1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170626 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 376 catcaaacaccacatccatcattca 400 ||||||||| ||||||||||||||| Sbjct: 82572 catcaaacatcacatccatcattca 82596
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 cagagggagagaagagtagac 608 ||||||||||||||||||||| Sbjct: 1729649 cagagggagagaagagtagac 1729629
>dbj|AK078947.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130221N23 product:similar to NIEMANN-PICK C3 PROTEIN [Homo sapiens], full insert sequence Length = 4471 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 cagacccagcaaggtgatcag 308 ||||||||||||||||||||| Sbjct: 3779 cagacccagcaaggtgatcag 3759
>gb|AC023701.4| Drosophila melanogaster X BAC RP98-29B16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 198245 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 376 catcaaacaccacatccatcattca 400 ||||||||| ||||||||||||||| Sbjct: 43436 catcaaacatcacatccatcattca 43412
>gb|AC148962.4| Atelerix albiventris clone LB4-372K23, complete sequence Length = 54256 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 588 cagagggagagaagagtagac 608 ||||||||||||||||||||| Sbjct: 690 cagagggagagaagagtagac 670
>gb|AY437867.1| Rattus norvegicus Niemann-Pick C1-like 1 (Npc1l1) mRNA, complete cds Length = 4484 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 cagacccagcaaggtgatcag 308 ||||||||||||||||||||| Sbjct: 3756 cagacccagcaaggtgatcag 3736
>gb|AY437866.1| Mus musculus Niemann-Pick C1-like 1 (Npc1l1) mRNA, complete cds Length = 4002 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 cagacccagcaaggtgatcag 308 ||||||||||||||||||||| Sbjct: 3756 cagacccagcaaggtgatcag 3736
>gb|AE003432.5| Drosophila melanogaster chromosome X, section 16 of 74 of the complete sequence Length = 319328 Score = 42.1 bits (21), Expect = 3.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 376 catcaaacaccacatccatcattca 400 ||||||||| ||||||||||||||| Sbjct: 318160 catcaaacatcacatccatcattca 318184
>ref|NM_001002025.1| Rattus norvegicus NPC1 (Niemann-Pick disease, type C1, gene)-like 1 (Npc1l1), mRNA Length = 4484 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 cagacccagcaaggtgatcag 308 ||||||||||||||||||||| Sbjct: 3756 cagacccagcaaggtgatcag 3736 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,284,720 Number of Sequences: 3902068 Number of extensions: 8284720 Number of successful extensions: 167525 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 167305 Number of HSP's gapped (non-prelim): 172 length of query: 859 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 836 effective length of database: 17,143,297,704 effective search space: 14331796880544 effective search space used: 14331796880544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
