ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags26m04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480007.1| Oryza sativa (japonica cultivar-group), mRNA 396 e-107
2dbj|AK119802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 396 e-107
3dbj|AK070704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 331 2e-87
4gb|AY104240.1| Zea mays PCO085368 mRNA sequence 236 7e-59
5gb|BT017576.1| Zea mays clone EL01N0427G10.c mRNA sequence 214 3e-52
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
7dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.14
9gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.14
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.14
11gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' reg... 44 0.55
12gb|AC182031.3| Loxodonta africana clone VMRC15-513A9, complete s... 42 2.2
13gb|AC051635.7| Homo sapiens chromosome 18, clone RP11-540A4, com... 42 2.2
14gb|AF263245.1|AF263245 Micromonospora megalomicea subsp. nigra m... 42 2.2
15dbj|AP000765.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 2.2
16gb|AC153609.2| Mus musculus 6 BAC RP23-77I23 (Roswell Park Cance... 40 8.6
17ref|NM_113888.1| Arabidopsis thaliana unknown protein AT3G29660 ... 40 8.6
18ref|XM_512256.1| PREDICTED: Pan troglodytes similar to Orn decar... 40 8.6
19ref|XM_517654.1| PREDICTED: Pan troglodytes similar to ankyrin r... 40 8.6
20gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 8.6
21gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 8.6
22gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete se... 40 8.6
23ref|XM_549122.2| PREDICTED: Canis familiaris similar to poly(A) ... 40 8.6
24emb|AL360092.10| Human DNA sequence from clone RP11-113L23 on ch... 40 8.6
25gb|AC115286.3| Homo sapiens chromosome 1 clone RP4-657M3, comple... 40 8.6
26emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 8.6
27emb|BX294138.1| Pirellula sp. strain 1 complete genome; segment ... 40 8.6
28emb|AL663014.3|OSJN00212 Oryza sativa genomic DNA, chromosome 4,... 40 8.6
29emb|AL583925.1|MLEPRTN9 Mycobacterium leprae strain TN complete ... 40 8.6
30emb|CR936768.1| Homo sapiens mRNA; cDNA DKFZp686E22228 (from clo... 40 8.6
31emb|AL954336.3| Mouse DNA sequence from clone RP23-223H19 on chr... 40 8.6
32gb|AC015813.12| Homo sapiens, clone RP11-159D12, complete sequence 40 8.6
33gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 8.6
34gb|AC025766.4| Homo sapiens chromosome 5 clone CTC-303L1, comple... 40 8.6
35gb|AC004152.1|AC004152 Homo sapiens chromosome 19, fosmid 37308,... 40 8.6
36dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
37gb|AC135964.2| Mus musculus BAC clone RP23-306G18 from chromosom... 40 8.6
38dbj|AB028618.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.6
39gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 8.6
40emb|AL109847.5|CNS018P0 Human chromosome 14 DNA sequence BAC R-6... 40 8.6
41emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4,... 40 8.6
42emb|AL935327.12| Mouse DNA sequence from clone RP23-259I23 on ch... 40 8.6
43gb|L01263.1|MSGB577COS M. leprae genomic dna sequence, cosmid b577 40 8.6
44gb|AY865622.1| Homo sapiens ornithine decarboxylase antizyme 1 (... 40 8.6
45dbj|D89870.1| Homo sapiens DNA for antizyme, complete cds 40 8.6 
>ref|XM_480007.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 718

 Score =  396 bits (200), Expect = e-107
 Identities = 288/316 (91%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gcgcatgttctccatnctcggccttctcgccgccgaacccgcccacgcctcccccgaagg 64
           ||||||||||||||| |||||||||||| ||||| || |||||||| || ||||||||||
Sbjct: 74  gcgcatgttctccat-ctcggccttctccccgcccaagccgcccaccccgcccccgaagg 132

                                                                       
Query: 65  ccgacccctcccccaacctcttcgtgtccgggttaagcaagcgtacaacaactgatggac 124
           ||||||||||||||||||||||| | || || |||||||||||||||||||| ||||| |
Sbjct: 133 ccgacccctcccccaacctcttcatctcaggcttaagcaagcgtacaacaacagatgggc 192

                                                                       
Query: 125 ttagagaagcttttgcaaagtttggggaagttgaacacgctcgagttatcacagatcgtg 184
           ||| |||||||||||||||||||||||||||   ||| ||||||||| ||||||||||||
Sbjct: 193 ttaaagaagcttttgcaaagtttggggaagtcatacatgctcgagttgtcacagatcgtg 252

                                                                       
Query: 185 tcactggtttttctaaggggtttggctttgtaaggtatgttacagttgaagatgcagcta 244
           ||||||| || ||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 253 tcactggattctctaaggggtttggcttcgtaaggtatgctacagttgaggatgcagcta 312

                                                                       
Query: 245 aaggaatagaaggaatggatggagaatttctggatggatgggttatttttgctgaatatg 304
           ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 313 aaggaatagaaggaatggatggaaagtttctcgatggatgggttatttttgctgaatatg 372

                           
Query: 305 ccagacccagaccacc 320
           | ||||||||| ||||
Sbjct: 373 ctagacccagaacacc 388



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 53/62 (85%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                       
Query: 491 ttgtcccaggtgtgaacaccgttgcctgatccaatattctcgtcgtgttggaccggtcgt 550
           |||| |||||||||||||  ||| || |||||||||||||  ||||||||||  ||||||
Sbjct: 560 ttgttccaggtgtgaacagagtttcc-gatccaatattcttatcgtgttggagtggtcgt 618

             
Query: 551 tt 552
           ||
Sbjct: 619 tt 620



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 346 cagccacaacaatcttggggctctccttctggttcatggggctcgcagtagatgaag 402
           |||||||||||||| |||||| |||| ||  |||| |||||  | ||||||||||||
Sbjct: 414 cagccacaacaatcatggggccctccatccagttcctggggtgcacagtagatgaag 470
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>dbj|AK119802.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D03, full
           insert sequence
          Length = 718

 Score =  396 bits (200), Expect = e-107
 Identities = 288/316 (91%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gcgcatgttctccatnctcggccttctcgccgccgaacccgcccacgcctcccccgaagg 64
           ||||||||||||||| |||||||||||| ||||| || |||||||| || ||||||||||
Sbjct: 74  gcgcatgttctccat-ctcggccttctccccgcccaagccgcccaccccgcccccgaagg 132

                                                                       
Query: 65  ccgacccctcccccaacctcttcgtgtccgggttaagcaagcgtacaacaactgatggac 124
           ||||||||||||||||||||||| | || || |||||||||||||||||||| ||||| |
Sbjct: 133 ccgacccctcccccaacctcttcatctcaggcttaagcaagcgtacaacaacagatgggc 192

                                                                       
Query: 125 ttagagaagcttttgcaaagtttggggaagttgaacacgctcgagttatcacagatcgtg 184
           ||| |||||||||||||||||||||||||||   ||| ||||||||| ||||||||||||
Sbjct: 193 ttaaagaagcttttgcaaagtttggggaagtcatacatgctcgagttgtcacagatcgtg 252

                                                                       
Query: 185 tcactggtttttctaaggggtttggctttgtaaggtatgttacagttgaagatgcagcta 244
           ||||||| || ||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 253 tcactggattctctaaggggtttggcttcgtaaggtatgctacagttgaggatgcagcta 312

                                                                       
Query: 245 aaggaatagaaggaatggatggagaatttctggatggatgggttatttttgctgaatatg 304
           ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 313 aaggaatagaaggaatggatggaaagtttctcgatggatgggttatttttgctgaatatg 372

                           
Query: 305 ccagacccagaccacc 320
           | ||||||||| ||||
Sbjct: 373 ctagacccagaacacc 388



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 53/62 (85%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                       
Query: 491 ttgtcccaggtgtgaacaccgttgcctgatccaatattctcgtcgtgttggaccggtcgt 550
           |||| |||||||||||||  ||| || |||||||||||||  ||||||||||  ||||||
Sbjct: 560 ttgttccaggtgtgaacagagtttcc-gatccaatattcttatcgtgttggagtggtcgt 618

             
Query: 551 tt 552
           ||
Sbjct: 619 tt 620



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                    
Query: 346 cagccacaacaatcttggggctctccttctggttcatggggctcgcagtagatgaag 402
           |||||||||||||| |||||| |||| ||  |||| |||||  | ||||||||||||
Sbjct: 414 cagccacaacaatcatggggccctccatccagttcctggggtgcacagtagatgaag 470
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>dbj|AK070704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056N10, full
           insert sequence
          Length = 2476

 Score =  331 bits (167), Expect = 2e-87
 Identities = 240/263 (91%), Gaps = 1/263 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gcgcatgttctccatnctcggccttctcgccgccgaacccgcccacgcctcccccgaagg 64
           ||||||||||||||| |||||||||||| ||||| || |||||||| || ||||||||||
Sbjct: 76  gcgcatgttctccat-ctcggccttctccccgcccaagccgcccaccccgcccccgaagg 134

                                                                       
Query: 65  ccgacccctcccccaacctcttcgtgtccgggttaagcaagcgtacaacaactgatggac 124
           ||||||||||||||||||||||| | || || |||||||||||||||||||| ||||| |
Sbjct: 135 ccgacccctcccccaacctcttcatctcaggcttaagcaagcgtacaacaacagatgggc 194

                                                                       
Query: 125 ttagagaagcttttgcaaagtttggggaagttgaacacgctcgagttatcacagatcgtg 184
           ||| |||||||||||||||||||||||||||   ||| ||||||||| ||||||||||||
Sbjct: 195 ttaaagaagcttttgcaaagtttggggaagtcatacatgctcgagttgtcacagatcgtg 254

                                                                       
Query: 185 tcactggtttttctaaggggtttggctttgtaaggtatgttacagttgaagatgcagcta 244
           ||||||| || ||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 255 tcactggattctctaaggggtttggcttcgtaaggtatgctacagttgaggatgcagcta 314

                                  
Query: 245 aaggaatagaaggaatggatgga 267
           |||||||||||||||||||||||
Sbjct: 315 aaggaatagaaggaatggatgga 337



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                              
Query: 271  tttctggatggatgggttatttttgctgaatatgccagacccagaccacc 320
            ||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1920 tttctcgatggatgggttatttttgctgaatatgctagacccagaacacc 1969



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 53/62 (85%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                        
Query: 491  ttgtcccaggtgtgaacaccgttgcctgatccaatattctcgtcgtgttggaccggtcgt 550
            |||| |||||||||||||  ||| || |||||||||||||  ||||||||||  ||||||
Sbjct: 2141 ttgttccaggtgtgaacagagtttcc-gatccaatattcttatcgtgttggagtggtcgt 2199

              
Query: 551  tt 552
            ||
Sbjct: 2200 tt 2201



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                     
Query: 346  cagccacaacaatcttggggctctccttctggttcatggggctcgcagtagatgaag 402
            |||||||||||||| |||||| |||| ||  |||| |||||  | ||||||||||||
Sbjct: 1995 cagccacaacaatcatggggccctccatccagttcctggggtgcacagtagatgaag 2051
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>gb|AY104240.1| Zea mays PCO085368 mRNA sequence
          Length = 849

 Score =  236 bits (119), Expect = 7e-59
 Identities = 270/319 (84%), Gaps = 1/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gcgcatgttctccatnctcggccttctcgccgccgaacccgcccacgcctcccccgaagg 64
           ||||||||||||| | ||| |||||| ||||||||||  ||||| |  | | ||| ||||
Sbjct: 157 gcgcatgttctccgt-ctctgccttcgcgccgccgaaggcgcccgccgcgcgccccaagg 215

                                                                       
Query: 65  ccgacccctcccccaacctcttcgtgtccgggttaagcaagcgtacaacaactgatggac 124
           ||||||| ||||||||||||||||| ||||| |||||||||||||| |||| ||| ||||
Sbjct: 216 ccgacccatcccccaacctcttcgtctccggcttaagcaagcgtaccacaagtgaaggac 275

                                                                       
Query: 125 ttagagaagcttttgcaaagtttggggaagttgaacacgctcgagttatcacagatcgtg 184
           |||||||||| |||||  ||||||| ||||||   || ||||||||| | || |||||||
Sbjct: 276 ttagagaagcctttgcggagtttggtgaagttttgcatgctcgagttgtgaccgatcgtg 335

                                                                       
Query: 185 tcactggtttttctaaggggtttggctttgtaaggtatgttacagttgaagatgcagcta 244
           ||| ||| ||||||||||| ||||||||||||||||||| |||    ||||| ||||| |
Sbjct: 336 tcagtgggttttctaagggatttggctttgtaaggtatgctacgaccgaagaggcagcca 395

                                                                       
Query: 245 aaggaatagaaggaatggatggagaatttctggatggatgggttatttttgctgaatatg 304
           | ||||||||||||| ||||||| | || || |||||||||||||||||||| ||||| |
Sbjct: 396 agggaatagaaggaaaggatggaaagttccttgatggatgggttatttttgcggaatacg 455

                              
Query: 305 ccagacccagaccaccgcc 323
           | | |||||||||||||||
Sbjct: 456 ctaaacccagaccaccgcc 474
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>gb|BT017576.1| Zea mays clone EL01N0427G10.c mRNA sequence
          Length = 729

 Score =  214 bits (108), Expect = 3e-52
 Identities = 265/316 (83%), Gaps = 1/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gcgcatgttctccatnctcggccttctcgccgccgaacccgcccacgcctcccccgaagg 64
           ||||||||||||| | ||| |||||| ||||||||||  ||||| |  | | ||| ||||
Sbjct: 85  gcgcatgttctccgt-ctctgccttcgcgccgccgaaggcgcccgccgcgcgccccaagg 143

                                                                       
Query: 65  ccgacccctcccccaacctcttcgtgtccgggttaagcaagcgtacaacaactgatggac 124
           ||||||| ||||||||||||||||| | ||| |||||||||||||| |||| ||| ||||
Sbjct: 144 ccgacccatcccccaacctcttcgtctgcggcttaagcaagcgtaccacaagtgaaggac 203

                                                                       
Query: 125 ttagagaagcttttgcaaagtttggggaagttgaacacgctcgagttatcacagatcgtg 184
           |||||||||| |||||  ||||||| ||||||   || ||||||||| | || |||||||
Sbjct: 204 ttagagaagcctttgcggagtttggtgaagttttgcatgctcgagttgtgaccgatcgtg 263

                                                                       
Query: 185 tcactggtttttctaaggggtttggctttgtaaggtatgttacagttgaagatgcagcta 244
           ||| ||| ||||||||||| ||||||||||||||||||| |||    ||||| ||||| |
Sbjct: 264 tcagtgggttttctaagggatttggctttgtaaggtatgctacgaccgaagaggcagcca 323

                                                                       
Query: 245 aaggaatagaaggaatggatggagaatttctggatggatgggttatttttgctgaatatg 304
           | |||||||| |||| ||||||| | || || |||||||||||||||||||| ||||| |
Sbjct: 324 agggaatagagggaaaggatggaaagttccttgatggatgggttatttttgcggaatacg 383

                           
Query: 305 ccagacccagaccacc 320
           | | ||||||||||||
Sbjct: 384 ctaaacccagaccacc 399
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                           
Query: 163     gctcgagttatcacagatcgtgtcactggtttttctaaggggtttggctttgtaaggtat 222
               ||||||||| ||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 2169450 gctcgagttgtcacagatcgtgtcactggattctctaaggggtttggcttcgtaaggtat 2169391

                                                            
Query: 223     gttacagttgaagatgcagctaaaggaatagaaggaatggatgga 267
               | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2169390 gctacagttgaggatgcagctaaaggaatagaaggaatggatgga 2169346



 Score =  109 bits (55), Expect = 1e-20
 Identities = 77/83 (92%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                           
Query: 5       gcgcatgttctccatnctcggccttctcgccgccgaacccgcccacgcctcccccgaagg 64
               ||||||||||||||| |||||||||||| ||||| || |||||||| || ||||||||||
Sbjct: 2170630 gcgcatgttctccat-ctcggccttctccccgcccaagccgcccaccccgcccccgaagg 2170572

                                      
Query: 65      ccgacccctcccccaacctcttc 87
               |||||||||||||||||||||||
Sbjct: 2170571 ccgacccctcccccaacctcttc 2170549



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                          
Query: 97      ttaagcaagcgtacaacaactgatggacttagagaagcttttgcaaagtttggggaagt 155
               |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 2169602 ttaagcaagcgtacaacaacagatgggcttaaagaagcttttgcaaagtttggggaagt 2169544



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                 
Query: 271     tttctggatggatgggttatttttgctgaatatgccagacccagaccacc 320
               ||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 2167764 tttctcgatggatgggttatttttgctgaatatgctagacccagaacacc 2167715



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 53/62 (85%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                           
Query: 491     ttgtcccaggtgtgaacaccgttgcctgatccaatattctcgtcgtgttggaccggtcgt 550
               |||| |||||||||||||  ||| || |||||||||||||  ||||||||||  ||||||
Sbjct: 2167543 ttgttccaggtgtgaacagagtttcc-gatccaatattcttatcgtgttggagtggtcgt 2167485

                 
Query: 551     tt 552
               ||
Sbjct: 2167484 tt 2167483



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                        
Query: 346     cagccacaacaatcttggggctctccttctggttcatggggctcgcagtagatgaag 402
               |||||||||||||| |||||| |||| ||  |||| |||||  | ||||||||||||
Sbjct: 2167689 cagccacaacaatcatggggccctccatccagttcctggggtgcacagtagatgaag 2167633
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>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_D01
          Length = 97862

 Score =  161 bits (81), Expect = 3e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                         
Query: 163   gctcgagttatcacagatcgtgtcactggtttttctaaggggtttggctttgtaaggtat 222
             ||||||||| ||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct: 47712 gctcgagttgtcacagatcgtgtcactggattctctaaggggtttggcttcgtaaggtat 47653

                                                          
Query: 223   gttacagttgaagatgcagctaaaggaatagaaggaatggatgga 267
             | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 47652 gctacagttgaggatgcagctaaaggaatagaaggaatggatgga 47608



 Score =  109 bits (55), Expect = 1e-20
 Identities = 77/83 (92%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                         
Query: 5     gcgcatgttctccatnctcggccttctcgccgccgaacccgcccacgcctcccccgaagg 64
             ||||||||||||||| |||||||||||| ||||| || |||||||| || ||||||||||
Sbjct: 48892 gcgcatgttctccat-ctcggccttctccccgcccaagccgcccaccccgcccccgaagg 48834

                                    
Query: 65    ccgacccctcccccaacctcttc 87
             |||||||||||||||||||||||
Sbjct: 48833 ccgacccctcccccaacctcttc 48811



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                        
Query: 97    ttaagcaagcgtacaacaactgatggacttagagaagcttttgcaaagtttggggaagt 155
             |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 47864 ttaagcaagcgtacaacaacagatgggcttaaagaagcttttgcaaagtttggggaagt 47806



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                               
Query: 271   tttctggatggatgggttatttttgctgaatatgccagacccagaccacc 320
             ||||| ||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 46026 tttctcgatggatgggttatttttgctgaatatgctagacccagaacacc 45977



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 53/62 (85%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                         
Query: 491   ttgtcccaggtgtgaacaccgttgcctgatccaatattctcgtcgtgttggaccggtcgt 550
             |||| |||||||||||||  ||| || |||||||||||||  ||||||||||  ||||||
Sbjct: 45805 ttgttccaggtgtgaacagagtttcc-gatccaatattcttatcgtgttggagtggtcgt 45747

               
Query: 551   tt 552
             ||
Sbjct: 45746 tt 45745



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 346   cagccacaacaatcttggggctctccttctggttcatggggctcgcagtagatgaag 402
             |||||||||||||| |||||| |||| ||  |||| |||||  | ||||||||||||
Sbjct: 45951 cagccacaacaatcatggggccctccatccagttcctggggtgcacagtagatgaag 45895
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 271     tttctggatggatgggttatttt 293
               |||||||||||||||||||||||
Sbjct: 9461752 tttctggatggatgggttatttt 9461730
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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 271    tttctggatggatgggttatttt 293
              |||||||||||||||||||||||
Sbjct: 159152 tttctggatggatgggttatttt 159130
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 271     tttctggatggatgggttatttt 293
               |||||||||||||||||||||||
Sbjct: 9459873 tttctggatggatgggttatttt 9459851
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>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene cluster,
             partial sequence
          Length = 24637

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 30    ctcgccgccgaacccgcccacg 51
             ||||||||||||||||||||||
Sbjct: 19829 ctcgccgccgaacccgcccacg 19808
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>gb|AC182031.3| Loxodonta africana clone VMRC15-513A9, complete sequence
          Length = 58986

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 234  agatgcagctaaaggaataga 254
            |||||||||||||||||||||
Sbjct: 5019 agatgcagctaaaggaataga 5039
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>gb|AC051635.7| Homo sapiens chromosome 18, clone RP11-540A4, complete sequence
          Length = 158608

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 258    aatggatggagaatttctggatgga 282
              |||||||||||||||| ||||||||
Sbjct: 116431 aatggatggagaatttttggatgga 116407
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>gb|AF263245.1|AF263245 Micromonospora megalomicea subsp. nigra megalomicin biosynthetic gene
             cluster, partial sequence
          Length = 47981

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    cgaaggccgacccctccccca 79
             |||||||||||||||||||||
Sbjct: 18985 cgaaggccgacccctccccca 18965
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>dbj|AP000765.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-816P15, complete
             sequence
          Length = 73916

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   ttacagttgaagatgcagcta 244
             |||||||||||||||||||||
Sbjct: 59387 ttacagttgaagatgcagcta 59407



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   ttacagttgaagatgcagct 243
             ||||||||||||||||||||
Sbjct: 61550 ttacagttgaagatgcagct 61531
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>gb|AC153609.2| Mus musculus 6 BAC RP23-77I23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221782

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 124    cttagagaagcttttgcaaagttt 147
              ||||||||||||| ||||||||||
Sbjct: 177790 cttagagaagcttgtgcaaagttt 177767
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>ref|NM_113888.1| Arabidopsis thaliana unknown protein AT3G29660 mRNA, complete cds
          Length = 417

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 138 tgcaaagtttggggaagttgaaca 161
           ||||||| ||||||||||||||||
Sbjct: 195 tgcaaagattggggaagttgaaca 218
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>ref|XM_512256.1| PREDICTED: Pan troglodytes similar to Orn decarboxylase antizyme
           (LOC455570), mRNA
          Length = 1971

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 55  cccccgaaggccgacccctcccccaacc 82
           ||||| |||||||||||| |||||||||
Sbjct: 857 ccccccaaggccgaccccgcccccaacc 830
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>ref|XM_517654.1| PREDICTED: Pan troglodytes similar to ankyrin repeat domain 32
            (LOC461750), mRNA
          Length = 4116

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  tatttttgctgaatatgcca 307
            ||||||||||||||||||||
Sbjct: 2676 tatttttgctgaatatgcca 2695
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 21      ctcggccttctcgccgccga 40
               ||||||||||||||||||||
Sbjct: 1042264 ctcggccttctcgccgccga 1042245
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 21      ctcggccttctcgccgccga 40
               ||||||||||||||||||||
Sbjct: 2523527 ctcggccttctcgccgccga 2523546
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>gb|DQ481668.1| Takifugu rubripes HoxDa gene cluster, complete sequence
          Length = 366816

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 236    atgcagctaaaggaatagaa 255
              ||||||||||||||||||||
Sbjct: 296907 atgcagctaaaggaatagaa 296926
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>ref|XM_549122.2| PREDICTED: Canis familiaris similar to poly(A) binding protein,
           cytoplasmic 5 (LOC492002), mRNA
          Length = 1149

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 196 tctaaggggtttggctttgtaaggtatg 223
           |||||||| ||||||||||| |||||||
Sbjct: 712 tctaagggctttggctttgtgaggtatg 739
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>emb|AL360092.10| Human DNA sequence from clone RP11-113L23 on chromosome 1, complete
            sequence
          Length = 85689

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 254  aaggaatggatggagaattt 273
            ||||||||||||||||||||
Sbjct: 1208 aaggaatggatggagaattt 1227
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>gb|AC115286.3| Homo sapiens chromosome 1 clone RP4-657M3, complete sequence
          Length = 125032

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    aaggaatggatggagaattt 273
              ||||||||||||||||||||
Sbjct: 124240 aaggaatggatggagaattt 124259
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 21      ctcggccttctcgccgccga 40
               ||||||||||||||||||||
Sbjct: 1859114 ctcggccttctcgccgccga 1859095
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>emb|BX294138.1| Pirellula sp. strain 1 complete genome; segment 6/24
          Length = 321950

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   gtcccaggtgtgaacaccgt 512
             ||||||||||||||||||||
Sbjct: 35516 gtcccaggtgtgaacaccgt 35535
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>emb|AL663014.3|OSJN00212 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0067G11,
              complete sequence
          Length = 156983

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 507    caccgttgcctgatccaata 526
              ||||||||||||||||||||
Sbjct: 136732 caccgttgcctgatccaata 136713
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>emb|AL583925.1|MLEPRTN9 Mycobacterium leprae strain TN complete genome; segment 9/10
          Length = 308950

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ctgatggacttagagaagct 135
             ||||||||||||||||||||
Sbjct: 52654 ctgatggacttagagaagct 52635
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>emb|CR936768.1| Homo sapiens mRNA; cDNA DKFZp686E22228 (from clone DKFZp686E22228)
          Length = 3619

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 288  tatttttgctgaatatgcca 307
            ||||||||||||||||||||
Sbjct: 1136 tatttttgctgaatatgcca 1155
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>emb|AL954336.3| Mouse DNA sequence from clone RP23-223H19 on chromosome 11 Contains a
             high mobility group box 1 (Hmgb1) pseudogene, a novel gene
             and two CpG islands, complete sequence
          Length = 117391

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   aaggaatagaaggaatggat 264
             ||||||||||||||||||||
Sbjct: 23598 aaggaatagaaggaatggat 23579
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>gb|AC015813.12| Homo sapiens, clone RP11-159D12, complete sequence
          Length = 181494

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    aacaccgttgcctgatccaa 524
              ||||||||||||||||||||
Sbjct: 103787 aacaccgttgcctgatccaa 103768
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 21      ctcggccttctcgccgccga 40
               ||||||||||||||||||||
Sbjct: 2705490 ctcggccttctcgccgccga 2705509
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>gb|AC025766.4| Homo sapiens chromosome 5 clone CTC-303L1, complete sequence
          Length = 83705

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   tatttttgctgaatatgcca 307
             ||||||||||||||||||||
Sbjct: 13455 tatttttgctgaatatgcca 13436
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>gb|AC004152.1|AC004152 Homo sapiens chromosome 19, fosmid 37308, complete sequence
          Length = 37635

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 55    cccccgaaggccgacccctcccccaacc 82
             ||||| |||||||||||| |||||||||
Sbjct: 15447 ccccccaaggccgaccccgcccccaacc 15420
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 507      caccgttgcctgatccaata 526
                ||||||||||||||||||||
Sbjct: 11375542 caccgttgcctgatccaata 11375523
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>gb|AC135964.2| Mus musculus BAC clone RP23-306G18 from chromosome 16, complete
             sequence
          Length = 179599

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   gtaaggtatgttacagttga 233
             ||||||||||||||||||||
Sbjct: 86916 gtaaggtatgttacagttga 86897
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>dbj|AB028618.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MOD1
          Length = 85690

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 138   tgcaaagtttggggaagttgaaca 161
             ||||||| ||||||||||||||||
Sbjct: 10989 tgcaaagattggggaagttgaaca 11012
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    agttgaagatgcagctaaag 247
              ||||||||||||||||||||
Sbjct: 783900 agttgaagatgcagctaaag 783919
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>emb|AL109847.5|CNS018P0 Human chromosome 14 DNA sequence BAC R-603H7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 186158

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   agctaaaggaatagaaggaa 259
             ||||||||||||||||||||
Sbjct: 51636 agctaaaggaatagaaggaa 51617
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>emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0056F09,
            complete sequence
          Length = 148191

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 507  caccgttgcctgatccaata 526
            ||||||||||||||||||||
Sbjct: 1155 caccgttgcctgatccaata 1136
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>emb|AL935327.12| Mouse DNA sequence from clone RP23-259I23 on chromosome 2, complete
             sequence
          Length = 127391

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   tttctggatggatgggttat 290
             ||||||||||||||||||||
Sbjct: 57480 tttctggatggatgggttat 57499
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>gb|L01263.1|MSGB577COS M. leprae genomic dna sequence, cosmid b577
          Length = 37770

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ctgatggacttagagaagct 135
             ||||||||||||||||||||
Sbjct: 13596 ctgatggacttagagaagct 13577
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>gb|AY865622.1| Homo sapiens ornithine decarboxylase antizyme 1 (OAZ1) gene, complete
            cds
          Length = 7663

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 55   cccccgaaggccgacccctcccccaacc 82
            ||||| |||||||||||| |||||||||
Sbjct: 2442 ccccccaaggccgaccccgcccccaacc 2415
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>dbj|D89870.1| Homo sapiens DNA for antizyme, complete cds
          Length = 10524

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 55   cccccgaaggccgacccctcccccaacc 82
            ||||| |||||||||||| |||||||||
Sbjct: 4690 ccccccaaggccgaccccgcccccaacc 4663


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,279,423
Number of Sequences: 3902068
Number of extensions: 5279423
Number of successful extensions: 106436
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106059
Number of HSP's gapped (non-prelim): 365
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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