>BRCA2_HUMAN (P51587) Breast cancer type 2 susceptibility protein (Fanconi anemia|
            group D1 protein)
          Length = 3418

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 24/93 (25%), Positives = 40/93 (43%)
 Frame = +1

Query: 61   VGEEEDSVVSSIRHLQSKSYGVSPLLKRVTSDSPYSPTDTLSHIMEMVLKSNDDRGRREM 240
            + E++D+ +S+     S SY        V +DS Y   + L   +E VLK+ +D+     
Sbjct: 1732 LSEKQDTYLSNSSMSNSYSYHSD----EVYNDSGYLSKNKLDSGIEPVLKNVEDQKNTSF 1787

Query: 241  KALVLNLLKDNSRCTDGTSDICSELFYGSCRGC 339
              ++ N+   N+       DIC E    S   C
Sbjct: 1788 SKVISNVKDANAYPQTVNEDICVEELVTSSSPC 1820

>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7059

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
 Frame = +2

Query: 323  VRVEVA*KDFSYFLWKHLKQV--FLPKLHAK*LWRLTISSGWSRY*LTSEFAMI-LWSCG 493
            V V V  KDF + LW + ++V  F P+L A   W+   S       L S    + LW+ G
Sbjct: 6767 VNVNVDFKDFQFMLWCNDEKVMTFYPRLQAASDWKPGYSMPVLYKYLNSPMERVSLWNYG 6826

Query: 494  Q-------AKVSLRHYMQNCQSPLATQLAV 562
            +         +++  Y Q CQ    T LAV
Sbjct: 6827 KPVTLPTGCMMNVAKYTQLCQYLNTTTLAV 6856

>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
 Frame = +2

Query: 323  VRVEVA*KDFSYFLWKHLKQV--FLPKLHAK*LWRLTISSGWSRY*LTSEFAMI-LWSCG 493
            V V V  KDF + LW + ++V  F P+L A   W+   S       L S    + LW+ G
Sbjct: 6767 VNVNVDFKDFQFMLWCNDEKVMTFYPRLQAASDWKPGYSMPVLYKYLNSPMERVSLWNYG 6826

Query: 494  Q-------AKVSLRHYMQNCQSPLATQLAV 562
            +         +++  Y Q CQ    T LAV
Sbjct: 6827 KPVTLPTGCMMNVAKYTQLCQYLNTTTLAV 6856

>R1AB_CVBEN (Q91A29) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
 Frame = +2

Query: 323  VRVEVA*KDFSYFLWKHLKQV--FLPKLHAK*LWRLTISSGWSRY*LTSEFAMI-LWSCG 493
            V V V  KDF + LW + ++V  F P+L A   W+   S       L S    + LW+ G
Sbjct: 6767 VNVNVDFKDFQFMLWCNDEKVMTFYPRLQAASDWKPGYSMPVLYKYLNSPMERVSLWNYG 6826

Query: 494  Q-------AKVSLRHYMQNCQSPLATQLAV 562
            +         +++  Y Q CQ    T LAV
Sbjct: 6827 KPVTLPTGCMMNVAKYTQLCQYLNTTTLAV 6856

>GDE_YEAST (Q06625) Glycogen debranching enzyme (Glycogen debrancher)|
           [Includes: 4-alpha-glucanotransferase (EC 2.4.1.25)
           (Oligo-1,4-1,4-glucantransferase);
           Amylo-alpha-1,6-glucosidase (EC 3.2.1.33)
           (Amylo-1,6-glucosidase) (Dextrin 6-alpha-D-glucosidase)]
          Length = 1536

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +1

Query: 58  WVGEEEDSVVSSIRHLQSKSYGVSPLLKRVTSDSPYSPTDTLSHIMEMVLKSNDDRGRRE 237
           W+G + + ++S I          +PL +R  S+SPYS  D L    E      D +   E
Sbjct: 152 WLGSDWEPILSKIAAKNYNMVHFTPLQERGESNSPYSIYDQLQFDQEHFKSPEDVKNLVE 211

Query: 238 MKALVLNLL 264
                LN+L
Sbjct: 212 HIHRDLNML 220

>FA13C_HUMAN (Q8NE31) Protein FAM13C1|
          Length = 585

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 64  GEEEDSVVSSIRHLQSKSYGVSPLLKRVTSDSPYSPTDTLSHIMEMVLKSNDD--RGRRE 237
           G+E  ++    +H+QS    +    ++   +  Y P+         VLK  +D  +GR++
Sbjct: 280 GKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWMNDLAKGRKQ 339

Query: 238 MKALVLNLLKDNSRCTDG 291
           +K L L L ++      G
Sbjct: 340 LKELKLKLSEEQGSAPKG 357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,885,355
Number of Sequences: 219361
Number of extensions: 1537925
Number of successful extensions: 3875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3873
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)