ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags26k17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 289 5e-75
2emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306... 289 5e-75
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 289 5e-75
4emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa... 289 5e-75
5dbj|AK064196.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 1e-32
6emb|AM085514.1| Triticum aestivum mRNA for autophagy protein 9 (... 58 3e-05
7ref|XM_476441.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.13
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
9dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
10gb|AC079857.5| Homo sapiens BAC clone RP11-589E1 from 4, complet... 44 0.50
11gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 7.9
12ref|XM_632452.1| Dictyostelium discoideum hypothetical protein (... 40 7.9
13gb|AY785359.1| Homo sapiens estrogen receptor 2 (ER beta) (ESR2)... 40 7.9
14gb|AC112866.5| Rattus norvegicus 1 BAC CH230-375M13 (Children's ... 40 7.9
15gb|AE008592.1| Rickettsia conorii str. Malish 7, section 24 of 1... 40 7.9
16gb|AC118747.5| Mus musculus chromosome 5, clone RP24-194J1, comp... 40 7.9
17gb|AY640407.1| Homo sapiens estrogen receptor beta gene, promote... 40 7.9
18gb|AC110387.6| Rattus norvegicus 1 BAC CH230-209H8 (Children's H... 40 7.9
19gb|AC146540.2| Gasterosteus aculeatus clone CH213-16D10, complet... 40 7.9
20gb|AC135229.31| Medicago truncatula clone mth2-7m14, complete se... 40 7.9
21gb|AF191544.2| Homo sapiens estrogen receptor beta gene, promote... 40 7.9
22gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 7.9
23emb|BX571668.20| Zebrafish DNA sequence from clone DKEY-47M8 in ... 40 7.9
24emb|BX323581.9| Zebrafish DNA sequence from clone CH211-255A21 i... 40 7.9
25gb|AC008804.7| Homo sapiens chromosome 5 clone CTD-2085F10, comp... 40 7.9
26gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Canc... 40 7.9
27gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, comple... 40 7.9
28emb|BX569780.6| Zebrafish DNA sequence from clone CH211-134A17 i... 40 7.9
29emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on ch... 40 7.9
30emb|Z58312.1|HS35B12F H.sapiens CpG island DNA genomic Mse1 frag... 40 7.9
31emb|CR388007.7| Zebrafish DNA sequence from clone DKEY-22G9 in l... 40 7.9
32emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-7... 40 7.9
33gb|AC145909.3| Gallus gallus BAC clone CH261-43H20 from chromoso... 40 7.9
34emb|AL840631.9| Zebrafish DNA sequence from clone DKEY-210J14, c... 40 7.9
35emb|AL954191.5| Zebrafish DNA sequence from clone CH211-230G14, ... 40 7.9 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  289 bits (146), Expect = 5e-75
 Identities = 287/334 (85%)
 Strand = Plus / Plus

                                                                            
Query: 19       tgtgtcaagtcatgcttggattatttggaagcggttccttgggtcggtgaggaagaagat 78
                |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| 
Sbjct: 25080248 tgtgtcaagtcatgcttggattatttggaagctgttccttgggttggtgaggaagaagac 25080307

                                                                            
Query: 79       agcgttgtgtcatcgatacgacatcttcagagcaagtcttacggagttagccctttgctg 138
                |  |||||||| |||||||| ||||||||||||||| |||| |||||||| ||| |||||
Sbjct: 25080308 aatgttgtgtcctcgatacggcatcttcagagcaaggcttatggagttagtcctctgctg 25080367

                                                                            
Query: 139      aaaagagttacatctgacagcccgtactcaccaaccgatactttgtctcatattatggag 198
                |||||| |||| |||||||  |   | |||||||| ||||| ||  ||| ||| ||||||
Sbjct: 25080368 aaaagaattacttctgacaatctaaaatcaccaactgatacattagctcttataatggag 25080427

                                                                            
Query: 199      atggtcttgaagagtaatgatgacagggggcgccgggaaatgaaagccctagttctgaat 258
                ||||| |||||||| | ||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct: 25080428 atggtgttgaagagcactgatgacagggcgcgtcgggaaatgaaagcccttgttctgaat 25080487

                                                                            
Query: 259      cttctcaaggataacagccgttgcacggatggaacatcagacatctgttctgaattattt 318
                ||||| || || | || || |||||| |||||| ||||||||||| |||| |||||||| 
Sbjct: 25080488 cttctgaaagacagcaaccattgcacagatggatcatcagacatcagttcagaattattg 25080547

                                                  
Query: 319      tacggttcgtgtcgaggttgcttagaaagacttc 352
                ||| |||| || | |||||||||||| |||||||
Sbjct: 25080548 tacagttcatgccaaggttgcttagacagacttc 25080581



 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Plus

                                                                            
Query: 398      ttacacgccaaataactctggagactgacaatctcctctggttggtcgagatattagtta 457
                ||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 25080627 ttacacggcaaataactctggagacagataatctcctctggttggttgagatattggtta 25080686

                                                                            
Query: 458      accagcgaatttgcgatgattttgtggtcatgtgggcaagccaaagtgagcttgcgtcat 517
                ||||||| || ||||||||||||||||   | ||||||| ||||||  || ||||   ||
Sbjct: 25080687 accagcgcatctgcgatgattttgtggctctatgggcaaaccaaagcaagattgcagaat 25080746

                                                                            
Query: 518      tacatgcaaaattgccaatcgcctctcgccacacagttagcagtataacagcaaggctct 577
                |||||| |||||||||  | |||||||| ||||| |||||| |||| ||||||||||| |
Sbjct: 25080747 tacatggaaaattgccggttgcctctcgtcacactgttagctgtatcacagcaaggcttt 25080806

                   
Query: 578      ttg 580
                |||
Sbjct: 25080807 ttg 25080809
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>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 121563

 Score =  289 bits (146), Expect = 5e-75
 Identities = 287/334 (85%)
 Strand = Plus / Minus

                                                                         
Query: 19    tgtgtcaagtcatgcttggattatttggaagcggttccttgggtcggtgaggaagaagat 78
             |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| 
Sbjct: 51231 tgtgtcaagtcatgcttggattatttggaagctgttccttgggttggtgaggaagaagac 51172

                                                                         
Query: 79    agcgttgtgtcatcgatacgacatcttcagagcaagtcttacggagttagccctttgctg 138
             |  |||||||| |||||||| ||||||||||||||| |||| |||||||| ||| |||||
Sbjct: 51171 aatgttgtgtcctcgatacggcatcttcagagcaaggcttatggagttagtcctctgctg 51112

                                                                         
Query: 139   aaaagagttacatctgacagcccgtactcaccaaccgatactttgtctcatattatggag 198
             |||||| |||| |||||||  |   | |||||||| ||||| ||  ||| ||| ||||||
Sbjct: 51111 aaaagaattacttctgacaatctaaaatcaccaactgatacattagctcttataatggag 51052

                                                                         
Query: 199   atggtcttgaagagtaatgatgacagggggcgccgggaaatgaaagccctagttctgaat 258
             ||||| |||||||| | ||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct: 51051 atggtgttgaagagcactgatgacagggcgcgtcgggaaatgaaagcccttgttctgaat 50992

                                                                         
Query: 259   cttctcaaggataacagccgttgcacggatggaacatcagacatctgttctgaattattt 318
             ||||| || || | || || |||||| |||||| ||||||||||| |||| |||||||| 
Sbjct: 50991 cttctgaaagacagcaaccattgcacagatggatcatcagacatcagttcagaattattg 50932

                                               
Query: 319   tacggttcgtgtcgaggttgcttagaaagacttc 352
             ||| |||| || | |||||||||||| |||||||
Sbjct: 50931 tacagttcatgccaaggttgcttagacagacttc 50898



 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Minus

                                                                         
Query: 398   ttacacgccaaataactctggagactgacaatctcctctggttggtcgagatattagtta 457
             ||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 50852 ttacacggcaaataactctggagacagataatctcctctggttggttgagatattggtta 50793

                                                                         
Query: 458   accagcgaatttgcgatgattttgtggtcatgtgggcaagccaaagtgagcttgcgtcat 517
             ||||||| || ||||||||||||||||   | ||||||| ||||||  || ||||   ||
Sbjct: 50792 accagcgcatctgcgatgattttgtggctctatgggcaaaccaaagcaagattgcagaat 50733

                                                                         
Query: 518   tacatgcaaaattgccaatcgcctctcgccacacagttagcagtataacagcaaggctct 577
             |||||| |||||||||  | |||||||| ||||| |||||| |||| ||||||||||| |
Sbjct: 50732 tacatggaaaattgccggttgcctctcgtcacactgttagctgtatcacagcaaggcttt 50673

                
Query: 578   ttg 580
             |||
Sbjct: 50672 ttg 50670
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  289 bits (146), Expect = 5e-75
 Identities = 287/334 (85%)
 Strand = Plus / Plus

                                                                            
Query: 19       tgtgtcaagtcatgcttggattatttggaagcggttccttgggtcggtgaggaagaagat 78
                |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| 
Sbjct: 25008450 tgtgtcaagtcatgcttggattatttggaagctgttccttgggttggtgaggaagaagac 25008509

                                                                            
Query: 79       agcgttgtgtcatcgatacgacatcttcagagcaagtcttacggagttagccctttgctg 138
                |  |||||||| |||||||| ||||||||||||||| |||| |||||||| ||| |||||
Sbjct: 25008510 aatgttgtgtcctcgatacggcatcttcagagcaaggcttatggagttagtcctctgctg 25008569

                                                                            
Query: 139      aaaagagttacatctgacagcccgtactcaccaaccgatactttgtctcatattatggag 198
                |||||| |||| |||||||  |   | |||||||| ||||| ||  ||| ||| ||||||
Sbjct: 25008570 aaaagaattacttctgacaatctaaaatcaccaactgatacattagctcttataatggag 25008629

                                                                            
Query: 199      atggtcttgaagagtaatgatgacagggggcgccgggaaatgaaagccctagttctgaat 258
                ||||| |||||||| | ||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct: 25008630 atggtgttgaagagcactgatgacagggcgcgtcgggaaatgaaagcccttgttctgaat 25008689

                                                                            
Query: 259      cttctcaaggataacagccgttgcacggatggaacatcagacatctgttctgaattattt 318
                ||||| || || | || || |||||| |||||| ||||||||||| |||| |||||||| 
Sbjct: 25008690 cttctgaaagacagcaaccattgcacagatggatcatcagacatcagttcagaattattg 25008749

                                                  
Query: 319      tacggttcgtgtcgaggttgcttagaaagacttc 352
                ||| |||| || | |||||||||||| |||||||
Sbjct: 25008750 tacagttcatgccaaggttgcttagacagacttc 25008783



 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Plus

                                                                            
Query: 398      ttacacgccaaataactctggagactgacaatctcctctggttggtcgagatattagtta 457
                ||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 25008829 ttacacggcaaataactctggagacagataatctcctctggttggttgagatattggtta 25008888

                                                                            
Query: 458      accagcgaatttgcgatgattttgtggtcatgtgggcaagccaaagtgagcttgcgtcat 517
                ||||||| || ||||||||||||||||   | ||||||| ||||||  || ||||   ||
Sbjct: 25008889 accagcgcatctgcgatgattttgtggctctatgggcaaaccaaagcaagattgcagaat 25008948

                                                                            
Query: 518      tacatgcaaaattgccaatcgcctctcgccacacagttagcagtataacagcaaggctct 577
                |||||| |||||||||  | |||||||| ||||| |||||| |||| ||||||||||| |
Sbjct: 25008949 tacatggaaaattgccggttgcctctcgtcacactgttagctgtatcacagcaaggcttt 25009008

                   
Query: 578      ttg 580
                |||
Sbjct: 25009009 ttg 25009011
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>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146686

 Score =  289 bits (146), Expect = 5e-75
 Identities = 287/334 (85%)
 Strand = Plus / Minus

                                                                         
Query: 19    tgtgtcaagtcatgcttggattatttggaagcggttccttgggtcggtgaggaagaagat 78
             |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| 
Sbjct: 26923 tgtgtcaagtcatgcttggattatttggaagctgttccttgggttggtgaggaagaagac 26864

                                                                         
Query: 79    agcgttgtgtcatcgatacgacatcttcagagcaagtcttacggagttagccctttgctg 138
             |  |||||||| |||||||| ||||||||||||||| |||| |||||||| ||| |||||
Sbjct: 26863 aatgttgtgtcctcgatacggcatcttcagagcaaggcttatggagttagtcctctgctg 26804

                                                                         
Query: 139   aaaagagttacatctgacagcccgtactcaccaaccgatactttgtctcatattatggag 198
             |||||| |||| |||||||  |   | |||||||| ||||| ||  ||| ||| ||||||
Sbjct: 26803 aaaagaattacttctgacaatctaaaatcaccaactgatacattagctcttataatggag 26744

                                                                         
Query: 199   atggtcttgaagagtaatgatgacagggggcgccgggaaatgaaagccctagttctgaat 258
             ||||| |||||||| | ||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct: 26743 atggtgttgaagagcactgatgacagggcgcgtcgggaaatgaaagcccttgttctgaat 26684

                                                                         
Query: 259   cttctcaaggataacagccgttgcacggatggaacatcagacatctgttctgaattattt 318
             ||||| || || | || || |||||| |||||| ||||||||||| |||| |||||||| 
Sbjct: 26683 cttctgaaagacagcaaccattgcacagatggatcatcagacatcagttcagaattattg 26624

                                               
Query: 319   tacggttcgtgtcgaggttgcttagaaagacttc 352
             ||| |||| || | |||||||||||| |||||||
Sbjct: 26623 tacagttcatgccaaggttgcttagacagacttc 26590



 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Minus

                                                                         
Query: 398   ttacacgccaaataactctggagactgacaatctcctctggttggtcgagatattagtta 457
             ||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 26544 ttacacggcaaataactctggagacagataatctcctctggttggttgagatattggtta 26485

                                                                         
Query: 458   accagcgaatttgcgatgattttgtggtcatgtgggcaagccaaagtgagcttgcgtcat 517
             ||||||| || ||||||||||||||||   | ||||||| ||||||  || ||||   ||
Sbjct: 26484 accagcgcatctgcgatgattttgtggctctatgggcaaaccaaagcaagattgcagaat 26425

                                                                         
Query: 518   tacatgcaaaattgccaatcgcctctcgccacacagttagcagtataacagcaaggctct 577
             |||||| |||||||||  | |||||||| ||||| |||||| |||| ||||||||||| |
Sbjct: 26424 tacatggaaaattgccggttgcctctcgtcacactgttagctgtatcacagcaaggcttt 26365

                
Query: 578   ttg 580
             |||
Sbjct: 26364 ttg 26362
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>dbj|AK064196.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D05, full
           insert sequence
          Length = 1769

 Score =  149 bits (75), Expect = 1e-32
 Identities = 156/183 (85%)
 Strand = Plus / Plus

                                                                       
Query: 398 ttacacgccaaataactctggagactgacaatctcctctggttggtcgagatattagtta 457
           ||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||
Sbjct: 210 ttacacggcaaataactctggagacagataatctcctctggttggttgagatattggtta 269

                                                                       
Query: 458 accagcgaatttgcgatgattttgtggtcatgtgggcaagccaaagtgagcttgcgtcat 517
           ||||||| || ||||||||||||||||   | ||||||| ||||||  || ||||   ||
Sbjct: 270 accagcgcatctgcgatgattttgtggctctatgggcaaaccaaagcaagattgcagaat 329

                                                                       
Query: 518 tacatgcaaaattgccaatcgcctctcgccacacagttagcagtataacagcaaggctct 577
           |||||| |||||||||  | |||||||| ||||| |||||| |||| ||||||||||| |
Sbjct: 330 tacatggaaaattgccggttgcctctcgtcacactgttagctgtatcacagcaaggcttt 389

              
Query: 578 ttg 580
           |||
Sbjct: 390 ttg 392



 Score =  143 bits (72), Expect = 7e-31
 Identities = 138/160 (86%)
 Strand = Plus / Plus

                                                                       
Query: 193 atggagatggtcttgaagagtaatgatgacagggggcgccgggaaatgaaagccctagtt 252
           ||||||||||| |||||||| | ||||||||||| ||| ||||||||||||||||| |||
Sbjct: 5   atggagatggtgttgaagagcactgatgacagggcgcgtcgggaaatgaaagcccttgtt 64

                                                                       
Query: 253 ctgaatcttctcaaggataacagccgttgcacggatggaacatcagacatctgttctgaa 312
           ||||||||||| || || | || || |||||| |||||| ||||||||||| |||| |||
Sbjct: 65  ctgaatcttctgaaagacagcaaccattgcacagatggatcatcagacatcagttcagaa 124

                                                   
Query: 313 ttattttacggttcgtgtcgaggttgcttagaaagacttc 352
           ||||| ||| |||| || | |||||||||||| |||||||
Sbjct: 125 ttattgtacagttcatgccaaggttgcttagacagacttc 164
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>emb|AM085514.1| Triticum aestivum mRNA for autophagy protein 9 (atg9 gene)
          Length = 3141

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 151 tctgacagcccgtactcaccaaccgatactttgtctc 187
           ||||||| |||||||||||||||||||||||| ||||
Sbjct: 2   tctgacaccccgtactcaccaaccgatactttatctc 38
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>ref|XM_476441.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1584

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 27  gtcatgcttggattatttggaagcggttccttgggtcggtgaggaagaaga 77
           |||||||||  ||||||||||||| || |||||||| ||||| || |||||
Sbjct: 672 gtcatgcttaaattatttggaagcagtgccttgggttggtgatgaggaaga 722
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                  
Query: 27      gtcatgcttggattatttggaagcggttccttgggtcggtgaggaagaaga 77
               |||||||||  ||||||||||||| || |||||||| ||||| || |||||
Sbjct: 1213770 gtcatgcttaaattatttggaagcagtgccttgggttggtgatgaggaaga 1213720
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>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0057M23
          Length = 168029

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                 
Query: 27     gtcatgcttggattatttggaagcggttccttgggtcggtgaggaagaaga 77
              |||||||||  ||||||||||||| || |||||||| ||||| || |||||
Sbjct: 115377 gtcatgcttaaattatttggaagcagtgccttgggttggtgatgaggaaga 115327
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>gb|AC079857.5| Homo sapiens BAC clone RP11-589E1 from 4, complete sequence
          Length = 186219

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 410    taactctggagactgacaatct 431
              ||||||||||||||||||||||
Sbjct: 159818 taactctggagactgacaatct 159839
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>gb|AC153156.1| Ornithorhynchus anatinus chromosome UNK clone OABb-289A1, complete
             sequence
          Length = 109794

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   tgggcaagccaaagtgagct 509
             ||||||||||||||||||||
Sbjct: 49952 tgggcaagccaaagtgagct 49933
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>ref|XM_632452.1| Dictyostelium discoideum hypothetical protein (DDB0187019), partial
            mRNA
          Length = 2169

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  ccgatactttgtctcatatt 192
            ||||||||||||||||||||
Sbjct: 1991 ccgatactttgtctcatatt 2010
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>gb|AY785359.1| Homo sapiens estrogen receptor 2 (ER beta) (ESR2) gene, complete cds
          Length = 65245

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  atcagacatctgttctgaat 313
            ||||||||||||||||||||
Sbjct: 1621 atcagacatctgttctgaat 1640
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>gb|AC112866.5| Rattus norvegicus 1 BAC CH230-375M13 (Children's Hospital Oakland
              Research Institute Rat (BN/SsNHsd/MCW) BAC library)
              complete sequence
          Length = 147079

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 345    aagacttcagctactttttg 364
              ||||||||||||||||||||
Sbjct: 141359 aagacttcagctactttttg 141340
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>gb|AE008592.1| Rickettsia conorii str. Malish 7, section 24 of 114 of the complete
             genome
          Length = 13013

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   atactttgtctcatattatg 195
             ||||||||||||||||||||
Sbjct: 12691 atactttgtctcatattatg 12672
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>gb|AC118747.5| Mus musculus chromosome 5, clone RP24-194J1, complete sequence
          Length = 166351

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 336   ttgcttagaaagacttcagctacttttt 363
             |||||||||||||| |||| ||||||||
Sbjct: 59294 ttgcttagaaagacatcaggtacttttt 59267
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>gb|AY640407.1| Homo sapiens estrogen receptor beta gene, promoter region and exon
           0N
          Length = 1641

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 294 atcagacatctgttctgaat 313
           ||||||||||||||||||||
Sbjct: 422 atcagacatctgttctgaat 441
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>gb|AC110387.6| Rattus norvegicus 1 BAC CH230-209H8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 226439

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   aagacttcagctactttttg 364
             ||||||||||||||||||||
Sbjct: 25504 aagacttcagctactttttg 25485
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>gb|AC146540.2| Gasterosteus aculeatus clone CH213-16D10, complete sequence
          Length = 212474

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 410   taactctggagactgacaatctcctctg 437
             ||||||||||  ||||||||||||||||
Sbjct: 45608 taactctggatgctgacaatctcctctg 45581
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>gb|AC135229.31| Medicago truncatula clone mth2-7m14, complete sequence
          Length = 111679

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    attatttggaagcggttcct 57
             ||||||||||||||||||||
Sbjct: 86194 attatttggaagcggttcct 86175
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>gb|AF191544.2| Homo sapiens estrogen receptor beta gene, promoter region and exon 1
          Length = 2199

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  atcagacatctgttctgaat 313
            ||||||||||||||||||||
Sbjct: 1492 atcagacatctgttctgaat 1511
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      atttggaagcggttccttgg 60
               ||||||||||||||||||||
Sbjct: 4146186 atttggaagcggttccttgg 4146167
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>emb|BX571668.20| Zebrafish DNA sequence from clone DKEY-47M8 in linkage group 10, complete
              sequence
          Length = 242710

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    tctgaagcaggttttccttc 392
              ||||||||||||||||||||
Sbjct: 220865 tctgaagcaggttttccttc 220846
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>emb|BX323581.9| Zebrafish DNA sequence from clone CH211-255A21 in linkage group 5,
             complete sequence
          Length = 99892

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   tctgaagcaggttttccttc 392
             ||||||||||||||||||||
Sbjct: 26556 tctgaagcaggttttccttc 26537
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>gb|AC008804.7| Homo sapiens chromosome 5 clone CTD-2085F10, complete sequence
          Length = 133476

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    tgaagagtaatgatgacagg 225
              ||||||||||||||||||||
Sbjct: 115114 tgaagagtaatgatgacagg 115133
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>gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 174097

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    agtaatgatgacagggggcg 230
              ||||||||||||||||||||
Sbjct: 139248 agtaatgatgacagggggcg 139267
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>gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, complete cds, complete sequence
          Length = 143340

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    atcagacatctgttctgaat 313
              ||||||||||||||||||||
Sbjct: 125626 atcagacatctgttctgaat 125607
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>emb|BX569780.6| Zebrafish DNA sequence from clone CH211-134A17 in linkage group 10,
             complete sequence
          Length = 187807

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   tctgaagcaggttttccttc 392
             ||||||||||||||||||||
Sbjct: 34103 tctgaagcaggttttccttc 34122
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>emb|AL831774.17| Mouse DNA sequence from clone RP23-301P13 on chromosome 4, complete
             sequence
          Length = 163802

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 17    cttgtgtcaagtcatgcttggatt 40
             ||||||||||||| ||||||||||
Sbjct: 70451 cttgtgtcaagtcttgcttggatt 70428
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>emb|Z58312.1|HS35B12F H.sapiens CpG island DNA genomic Mse1 fragment, clone 35b12,
           forward read cpg35b12.ft1d
          Length = 253

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 atcagacatctgttctgaat 313
           ||||||||||||||||||||
Sbjct: 151 atcagacatctgttctgaat 132
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>emb|CR388007.7| Zebrafish DNA sequence from clone DKEY-22G9 in linkage group 6, complete
              sequence
          Length = 221983

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 556    agcagtataacagcaaggct 575
              ||||||||||||||||||||
Sbjct: 148246 agcagtataacagcaaggct 148227
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>emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-712C19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176257

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   atcagacatctgttctgaat 313
             ||||||||||||||||||||
Sbjct: 81623 atcagacatctgttctgaat 81642
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>gb|AC145909.3| Gallus gallus BAC clone CH261-43H20 from chromosome unknown, complete
              sequence
          Length = 213402

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    atcttcagagcaagtcttac 120
              ||||||||||||||||||||
Sbjct: 141182 atcttcagagcaagtcttac 141201
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>emb|AL840631.9| Zebrafish DNA sequence from clone DKEY-210J14, complete sequence
          Length = 171481

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   tctgaagcaggttttccttc 392
             ||||||||||||||||||||
Sbjct: 57883 tctgaagcaggttttccttc 57864
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>emb|AL954191.5| Zebrafish DNA sequence from clone CH211-230G14, complete sequence
          Length = 151595

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   tctgaagcaggttttccttc 392
             ||||||||||||||||||||
Sbjct: 98967 tctgaagcaggttttccttc 98986


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,707,575
Number of Sequences: 3902068
Number of extensions: 4707575
Number of successful extensions: 109202
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109072
Number of HSP's gapped (non-prelim): 125
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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