ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags26k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191469.1| Oryza sativa (japonica cultivar-group), predic... 143 7e-31
2gb|BT016410.1| Zea mays clone Contig243 mRNA sequence 119 1e-23
3gb|AY104436.1| Zea mays PCO129536 mRNA sequence 119 1e-23
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
5dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
6gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 46 0.12
7emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4,... 42 1.8
8gb|AC068037.5| Homo sapiens BAC clone RP11-757K22 from 4, comple... 42 1.8
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
10emb|CT025698.13| Mouse DNA sequence from clone RP24-223P14 on ch... 42 1.8
11gb|AC115885.29| Mus musculus chromosome 3, clone RP24-396D16, co... 40 7.3
12emb|AL513479.12| Human DNA sequence from clone RP11-329N22 on ch... 40 7.3
13gb|AY181209.1| Zea mays truncated cold acclimation protein COR41... 40 7.3
14gb|AC023720.4| Drosophila melanogaster X BAC RP98-7F15 (Roswell ... 40 7.3
15gb|AC104605.7| Drosophila melanogaster X BAC RP98-11C13 (Roswell... 40 7.3
16gb|AC114761.3| Homo sapiens BAC clone RP11-354G23 from 4, comple... 40 7.3
17gb|AC092284.2| Homo sapiens chromosome 5 clone CTD-2160D9, compl... 40 7.3
18dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
19gb|AC154840.2| Mus musculus BAC clone RP23-61I7 from chromosome ... 40 7.3
20gb|AC007077.2| Homo sapiens BAC clone RP11-260K8 from 2, complet... 40 7.3
21gb|AC113407.2| Homo sapiens chromosome 5 clone RP11-475J5, compl... 40 7.3
22dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
23emb|AL935299.11| Zebrafish DNA sequence from clone DKEY-38M5, co... 40 7.3
24gb|AC154123.9| Mus musculus chromosome 5, clone RP24-324D14, com... 40 7.3
25gb|AE003435.3| Drosophila melanogaster chromosome X, section 19 ... 40 7.3
26emb|BX004800.12| Zebrafish DNA sequence from clone DKEY-18F22, c... 40 7.3 
>ref|NM_191469.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 453

 Score =  143 bits (72), Expect = 7e-31
 Identities = 118/132 (89%), Gaps = 1/132 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaggctgctggaccggagtgcctcgtgcccggcc-gcaggcgcctctgcggctgatggg 59
           |||||| || || ||||||||| |||||||||| | ||||||||| ||||||||| ||||
Sbjct: 303 ggaggcggccgggccggagtgcatcgtgcccgggcagcaggcgccgctgcggctgctggg 362

                                                                       
Query: 60  actcaaggtttggcccctagatatagagatgaagttcttggaaccatttggccgggaatt 119
            ||||||||||||||||| |||||||||||||||||| |||| |||||||| |||||| |
Sbjct: 363 cctcaaggtttggccccttgatatagagatgaagttcctggagccatttggacgggaact 422

                       
Query: 120 acattccatgaa 131
           ||||||||||||
Sbjct: 423 acattccatgaa 434
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>gb|BT016410.1| Zea mays clone Contig243 mRNA sequence
          Length = 1015

 Score =  119 bits (60), Expect = 1e-23
 Identities = 145/172 (84%), Gaps = 1/172 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaggctgctggaccggagtgcctcgtgcccggcc-gcaggcgcctctgcggctgatggg 59
           |||||| || || ||||||||| |||||||||| | ||| ||||||||  |||| |||||
Sbjct: 367 ggaggcagccgggccggagtgcatcgtgcccggacagcaagcgcctctaaggcttatggg 426

                                                                       
Query: 60  actcaaggtttggcccctagatatagagatgaagttcttggaaccatttggccgggaatt 119
            |||||||| |||||| | |||||||| ||||||||| | || |||||||| |||||| |
Sbjct: 427 gctcaaggtctggcccgttgatatagatatgaagttcctagagccatttggacgggaact 486

                                                               
Query: 120 acattccatgaagaagtttatggacaaatcatgcagcgtcatggactcatct 171
           |||||| ||||| || || ||||||||||| ||||| || ||||||||||||
Sbjct: 487 acattcaatgaaaaaattcatggacaaatcgtgcagtgttatggactcatct 538
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>gb|AY104436.1| Zea mays PCO129536 mRNA sequence
          Length = 952

 Score =  119 bits (60), Expect = 1e-23
 Identities = 145/172 (84%), Gaps = 1/172 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaggctgctggaccggagtgcctcgtgcccggcc-gcaggcgcctctgcggctgatggg 59
           |||||| || || ||||||||| |||||||||| | ||| ||||||||  |||| |||||
Sbjct: 366 ggaggcagccgggccggagtgcatcgtgcccggacagcaagcgcctctaaggcttatggg 425

                                                                       
Query: 60  actcaaggtttggcccctagatatagagatgaagttcttggaaccatttggccgggaatt 119
            |||||||| |||||| | |||||||| ||||||||| | || |||||||| |||||| |
Sbjct: 426 gctcaaggtctggcccgttgatatagatatgaagttcctagagccatttggacgggaact 485

                                                               
Query: 120 acattccatgaagaagtttatggacaaatcatgcagcgtcatggactcatct 171
           |||||| ||||| || || ||||||||||| ||||| || ||||||||||||
Sbjct: 486 acattcaatgaaaaaattcatggacaaatcgtgcagtgttatggactcatct 537
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                            
Query: 65       aggtttggcccctagatatagagatgaagttcttggaaccatttggccgggaattacatt 124
                ||||||||||||| |||||||||||||||||| |||| |||||||| |||||| ||||||
Sbjct: 32849858 aggtttggccccttgatatagagatgaagttcctggagccatttggacgggaactacatt 32849799

                       
Query: 125      ccatgaa 131
                |||||||
Sbjct: 32849798 ccatgaa 32849792



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 134      agtttatggacaaatcatgcagcgtcatggactcatct 171
                |||| |||||||| ||||||||||| ||||||||||||
Sbjct: 32849042 agttcatggacaagtcatgcagcgttatggactcatct 32849005



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 347      gcatcacttgatggaacgagatat 370
                ||||||||||||||||| ||||||
Sbjct: 32848856 gcatcacttgatggaacaagatat 32848833
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>dbj|AP003344.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0413G02
          Length = 155633

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                         
Query: 65    aggtttggcccctagatatagagatgaagttcttggaaccatttggccgggaattacatt 124
             ||||||||||||| |||||||||||||||||| |||| |||||||| |||||| ||||||
Sbjct: 71263 aggtttggccccttgatatagagatgaagttcctggagccatttggacgggaactacatt 71204

                    
Query: 125   ccatgaa 131
             |||||||
Sbjct: 71203 ccatgaa 71197



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 134   agtttatggacaaatcatgcagcgtcatggactcatct 171
             |||| |||||||| ||||||||||| ||||||||||||
Sbjct: 70447 agttcatggacaagtcatgcagcgttatggactcatct 70410



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   gcatcacttgatggaacgagatat 370
             ||||||||||||||||| ||||||
Sbjct: 70261 gcatcacttgatggaacaagatat 70238
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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 439     tttgcgccgagataaattgtttt 461
               |||||||||||||||||||||||
Sbjct: 1082354 tttgcgccgagataaattgtttt 1082332
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>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02,
              complete sequence
          Length = 175163

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 465    catgtaatacatttgttatat 485
              |||||||||||||||||||||
Sbjct: 110084 catgtaatacatttgttatat 110064
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>gb|AC068037.5| Homo sapiens BAC clone RP11-757K22 from 4, complete sequence
          Length = 206136

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 458   ttttcaacatgtaatacattt 478
             |||||||||||||||||||||
Sbjct: 23602 ttttcaacatgtaatacattt 23622
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 465      catgtaatacatttgttatat 485
                |||||||||||||||||||||
Sbjct: 28461409 catgtaatacatttgttatat 28461389
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>emb|CT025698.13| Mouse DNA sequence from clone RP24-223P14 on chromosome 9, complete
             sequence
          Length = 193973

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   cacccacagtgcctgatgaag 271
             |||||||||||||||||||||
Sbjct: 79934 cacccacagtgcctgatgaag 79914
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>gb|AC115885.29| Mus musculus chromosome 3, clone RP24-396D16, complete sequence
          Length = 186636

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    agcaaggattagcaagtaat 404
              ||||||||||||||||||||
Sbjct: 102094 agcaaggattagcaagtaat 102075
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>emb|AL513479.12| Human DNA sequence from clone RP11-329N22 on chromosome 1, complete
             sequence
          Length = 193826

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 465   catgtaatacatttgttata 484
             ||||||||||||||||||||
Sbjct: 71017 catgtaatacatttgttata 71036
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>gb|AY181209.1| Zea mays truncated cold acclimation protein COR413-TM1 mRNA,
          complete cds
          Length = 1236

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 11 ggaccggagtgcctcgtgcc 30
          ||||||||||||||||||||
Sbjct: 33 ggaccggagtgcctcgtgcc 14
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>gb|AC023720.4| Drosophila melanogaster X BAC RP98-7F15 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179205

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 261    gcctgatgaagctacaaggccgca 284
              ||||||||||||||||| ||||||
Sbjct: 148934 gcctgatgaagctacaacgccgca 148911
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>gb|AC104605.7| Drosophila melanogaster X BAC RP98-11C13 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 167366

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 261  gcctgatgaagctacaaggccgca 284
            ||||||||||||||||| ||||||
Sbjct: 6291 gcctgatgaagctacaacgccgca 6268
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>gb|AC114761.3| Homo sapiens BAC clone RP11-354G23 from 4, complete sequence
          Length = 70709

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   tttcaacatgtaatacattt 478
             ||||||||||||||||||||
Sbjct: 63112 tttcaacatgtaatacattt 63131
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>gb|AC092284.2| Homo sapiens chromosome 5 clone CTD-2160D9, complete sequence
          Length = 107044

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   aatacatttgttatattcat 489
             ||||||||||||||||||||
Sbjct: 20572 aatacatttgttatattcat 20591
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 471      atacatttgttatattcatg 490
                ||||||||||||||||||||
Sbjct: 20630771 atacatttgttatattcatg 20630752
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>gb|AC154840.2| Mus musculus BAC clone RP23-61I7 from chromosome 14, complete sequence
          Length = 195596

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 471   atacatttgttatattcatgaacc 494
             |||||||||||||||| |||||||
Sbjct: 61818 atacatttgttatattgatgaacc 61795
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>gb|AC007077.2| Homo sapiens BAC clone RP11-260K8 from 2, complete sequence
          Length = 182019

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 104   catttggccgggaattacattcca 127
             ||||||||| ||||||||||||||
Sbjct: 60386 catttggcctggaattacattcca 60409
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>gb|AC113407.2| Homo sapiens chromosome 5 clone RP11-475J5, complete sequence
          Length = 186648

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 470   aatacatttgttatattcat 489
             ||||||||||||||||||||
Sbjct: 13156 aatacatttgttatattcat 13175
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>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0427B07
          Length = 172058

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   atacatttgttatattcatg 490
             ||||||||||||||||||||
Sbjct: 53178 atacatttgttatattcatg 53159
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>emb|AL935299.11| Zebrafish DNA sequence from clone DKEY-38M5, complete sequence
          Length = 229574

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 447  gagataaattgttttcaaca 466
            ||||||||||||||||||||
Sbjct: 8966 gagataaattgttttcaaca 8985
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>gb|AC154123.9| Mus musculus chromosome 5, clone RP24-324D14, complete sequence
          Length = 175751

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   tttcaacatgtaatacattt 478
             ||||||||||||||||||||
Sbjct: 55465 tttcaacatgtaatacattt 55484
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>gb|AE003435.3| Drosophila melanogaster chromosome X, section 19 of 74 of the complete
              sequence
          Length = 290042

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 261    gcctgatgaagctacaaggccgca 284
              ||||||||||||||||| ||||||
Sbjct: 280298 gcctgatgaagctacaacgccgca 280321
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>emb|BX004800.12| Zebrafish DNA sequence from clone DKEY-18F22, complete sequence
          Length = 269096

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   aatacatttgttatattcat 489
             ||||||||||||||||||||
Sbjct: 97492 aatacatttgttatattcat 97473


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,171,714
Number of Sequences: 3902068
Number of extensions: 4171714
Number of successful extensions: 73308
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73185
Number of HSP's gapped (non-prelim): 123
length of query: 538
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 515
effective length of database: 17,143,297,704
effective search space: 8828798317560
effective search space used: 8828798317560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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