ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags26j17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC108695.2| Homo sapiens 3 BAC RP11-744C8 (Roswell Park Cance... 44 0.54
2gb|AC108715.2| Homo sapiens 3 BAC RP11-184F3 (Roswell Park Cance... 44 0.54
3gb|AC169698.1| Rhesus Macaque BAC CH250-254N3 (Children's Hospi... 42 2.1
4gb|AC104660.4| Homo sapiens BAC clone RP11-614H7 from 4, complet... 42 2.1
5gb|AC008657.8| Homo sapiens chromosome 5 clone CTB-19H10, comple... 42 2.1
6gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, com... 42 2.1
7gb|AC171463.2| Mus musculus chromosome 1, clone wi1-1085N10, com... 42 2.1
8gb|AC170258.1| Mus musculus chromosome 1, clone wi1-2157A24, com... 42 2.1
9gb|AC135957.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
10gb|AC120788.7| Mus musculus chromosome 14, clone RP23-279B13, co... 40 8.4
11gb|U36934.1|UPU36934 Unidentified phycodnavirus clone OTU4 DNA p... 40 8.4
12gb|AC163746.5| Mus musculus BAC clone RP23-394B5 from chromosome... 40 8.4
13gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome ... 40 8.4
14gb|AC136921.8| Mus musculus chromosome 17, clone RP23-210D4, com... 40 8.4
15gb|AC010091.2| Homo sapiens BAC clone RP11-295A1 from 7, complet... 40 8.4
16emb|AL391650.18| Human DNA sequence from clone RP11-96L14 on chr... 40 8.4
17emb|AL365500.9| Human DNA sequence from clone RP11-232C13 on chr... 40 8.4
18emb|AL137022.8| Human DNA sequence from clone RP11-344A7 on chro... 40 8.4
19emb|AL136136.7| Human DNA sequence from clone RP11-141E20 on chr... 40 8.4
20emb|AL078645.31|HSG115G20 Human DNA sequence from clone GS1-115G... 40 8.4
21gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 ma... 40 8.4
22emb|AL035259.1|SPCC1322 S.pombe chromosome III cosmid c1322 40 8.4
23emb|CR937045.1|PT025P03 Pan troglodytes chromosome 11 BAC PTB-02... 40 8.4
24gb|AC121764.2| Homo sapiens chromosome 3 clone RP11-875H7, compl... 40 8.4
25gb|AC087627.10| Homo sapiens chromosome 8, clone RP11-641K18, co... 40 8.4
26gb|AC087672.7| Homo sapiens chromosome 8, clone RP11-6I2, comple... 40 8.4
27gb|AC009274.11| Homo sapiens chromosome 7 clone RP11-254L11, com... 40 8.4
28ref|NM_001023133.1| Schizosaccharomyces pombe 972h- hypothetical... 40 8.4
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
30dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
31gb|M22434.1|HUMCEAC Homo sapiens clone hsCGM2 carcinoembryonic a... 40 8.4
32dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
33dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
34emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chr... 40 8.4
35gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 8.4
36emb|BX936364.6| Zebrafish DNA sequence from clone CH211-247G11 i... 40 8.4
37emb|AL049828.3|CNS0000A Human chromosome 14 DNA sequence BAC R-1... 40 8.4
38gb|AC005797.1|AC005797 Homo sapiens chromosome 19, cosmid F13825... 40 8.4
39gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
40emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g... 40 8.4 
>gb|AC108695.2| Homo sapiens 3 BAC RP11-744C8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 190845

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 470   caaactagtcatagaagagaag 491
             ||||||||||||||||||||||
Sbjct: 30881 caaactagtcatagaagagaag 30860
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>gb|AC108715.2| Homo sapiens 3 BAC RP11-184F3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176462

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 470   caaactagtcatagaagagaag 491
             ||||||||||||||||||||||
Sbjct: 88444 caaactagtcatagaagagaag 88465
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>gb|AC169698.1| Rhesus Macaque  BAC CH250-254N3 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 179377

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 319    caagcaagatgatttactgat 339
              |||||||||||||||||||||
Sbjct: 156856 caagcaagatgatttactgat 156836
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>gb|AC104660.4| Homo sapiens BAC clone RP11-614H7 from 4, complete sequence
          Length = 131276

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 183   ggtatgttgccctatgcatct 203
             |||||||||||||||||||||
Sbjct: 47045 ggtatgttgccctatgcatct 47065
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>gb|AC008657.8| Homo sapiens chromosome 5 clone CTB-19H10, complete sequence
          Length = 166637

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 183    ggtatgttgccctatgcatct 203
              |||||||||||||||||||||
Sbjct: 157820 ggtatgttgccctatgcatct 157800
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>gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, complete sequence
          Length = 167344

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 212   acaacaaaaccagaatcatcagtta 236
             |||||||||||||||| ||||||||
Sbjct: 17351 acaacaaaaccagaattatcagtta 17327
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>gb|AC171463.2| Mus musculus chromosome 1, clone wi1-1085N10, complete sequence
          Length = 39321

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 212   acaacaaaaccagaatcatcagtta 236
             |||||||||||||||| ||||||||
Sbjct: 32014 acaacaaaaccagaattatcagtta 31990
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>gb|AC170258.1| Mus musculus chromosome 1, clone wi1-2157A24, complete sequence
          Length = 40121

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 212   acaacaaaaccagaatcatcagtta 236
             |||||||||||||||| ||||||||
Sbjct: 20678 acaacaaaaccagaattatcagtta 20654
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>gb|AC135957.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037P02
              map E61794SA, complete sequence
          Length = 131645

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     aacaatcatctccccgatca 46
              ||||||||||||||||||||
Sbjct: 121753 aacaatcatctccccgatca 121772
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>gb|AC120788.7| Mus musculus chromosome 14, clone RP23-279B13, complete sequence
          Length = 215810

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 365  aagatgccaaggaaactcag 384
            ||||||||||||||||||||
Sbjct: 7887 aagatgccaaggaaactcag 7868
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>gb|U36934.1|UPU36934 Unidentified phycodnavirus clone OTU4 DNA polymerase gene, partial
           cds
          Length = 683

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 477 gtcatagaagagaagagatatggt 500
           ||||| ||||||||||||||||||
Sbjct: 121 gtcatggaagagaagagatatggt 144
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>gb|AC163746.5| Mus musculus BAC clone RP23-394B5 from chromosome 17, complete sequence
          Length = 199852

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 210   gcacaacaaaaccagaatcatcag 233
             |||||||||||||||| |||||||
Sbjct: 87154 gcacaacaaaaccagactcatcag 87131
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>gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome 17, complete sequence
          Length = 220643

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 210    gcacaacaaaaccagaatcatcag 233
              |||||||||||||||| |||||||
Sbjct: 211536 gcacaacaaaaccagactcatcag 211513
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>gb|AC136921.8| Mus musculus chromosome 17, clone RP23-210D4, complete sequence
          Length = 244237

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 210    gcacaacaaaaccagaatcatcag 233
              |||||||||||||||| |||||||
Sbjct: 230008 gcacaacaaaaccagactcatcag 230031
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>gb|AC010091.2| Homo sapiens BAC clone RP11-295A1 from 7, complete sequence
          Length = 56864

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   aagaaaccctttcctgcatc 147
             ||||||||||||||||||||
Sbjct: 45661 aagaaaccctttcctgcatc 45680
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>emb|AL391650.18| Human DNA sequence from clone RP11-96L14 on chromosome 1 Contains the
             EXTL1 gene for exostoses (multiple)-like 1, the SLC30A2
             gene for solute carrier family 30 (zinc transporter)
             member 2, the RNF28 gene for ring finger protein 28, a
             novel gene, a novel gene (FLJ14050), the gene for zinc
             finger protein (ZT86), a novel gene, the 5' end of the
             gene for connector enhancer of KSR-like (Drosophila kinase
             suppressor of ras) (CNK1) and four CpG islands, complete
             sequence
          Length = 176006

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 547   tgagccttggtggcaccact 566
             ||||||||||||||||||||
Sbjct: 26541 tgagccttggtggcaccact 26560
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>emb|AL365500.9| Human DNA sequence from clone RP11-232C13 on chromosome 10 Contains the
              5' end of a novel gene, complete sequence
          Length = 153558

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    agatgccaaggaaactcaga 385
              ||||||||||||||||||||
Sbjct: 107478 agatgccaaggaaactcaga 107497
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>emb|AL137022.8| Human DNA sequence from clone RP11-344A7 on chromosome 9p21.2-22.3
             Contains the 5' end of a novel gene, a histone H3
             pseudogene, and a CpG island, complete sequence
          Length = 169854

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 543   acattgagccttggtggcaccact 566
             ||||||||||||| ||||||||||
Sbjct: 66037 acattgagccttgatggcaccact 66014
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>emb|AL136136.7| Human DNA sequence from clone RP11-141E20 on chromosome 1q31.2-31.3
              Contains GSSs and STSs, complete sequence
          Length = 146158

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    ggaaaataaggccaggcagt 316
              ||||||||||||||||||||
Sbjct: 140030 ggaaaataaggccaggcagt 140011
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>emb|AL078645.31|HSG115G20 Human DNA sequence from clone GS1-115G20 on chromosome 1 Contains part
             of the C1orf21 gene for chromosome 1 open reading frame
             21, a novel pseudogene and a novel transcript, complete
             sequence
          Length = 206089

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 414   cagaatatcacctggcatatataa 437
             ||||||||||||| ||||||||||
Sbjct: 75771 cagaatatcaccttgcatatataa 75794
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>gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 map 14, complete sequence
          Length = 180338

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    aagatgccaaggaaactcag 384
              ||||||||||||||||||||
Sbjct: 166548 aagatgccaaggaaactcag 166529
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>emb|AL035259.1|SPCC1322 S.pombe chromosome III cosmid c1322
          Length = 42070

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   caacaaaaccagaatcatca 232
             ||||||||||||||||||||
Sbjct: 36564 caacaaaaccagaatcatca 36583
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>emb|CR937045.1|PT025P03 Pan troglodytes chromosome 11 BAC PTB-025P03, complete sequence
          Length = 173795

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 543   acattgagccttggtggcaccact 566
             ||||||||||||| ||||||||||
Sbjct: 99114 acattgagccttgatggcaccact 99091
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>gb|AC121764.2| Homo sapiens chromosome 3 clone RP11-875H7, complete sequence
          Length = 201379

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    aggaaactcagacatgtcct 393
              ||||||||||||||||||||
Sbjct: 134404 aggaaactcagacatgtcct 134385
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>gb|AC087627.10| Homo sapiens chromosome 8, clone RP11-641K18, complete sequence
          Length = 170211

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 185    tatgttgccctatgcatctc 204
              ||||||||||||||||||||
Sbjct: 128726 tatgttgccctatgcatctc 128745
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>gb|AC087672.7| Homo sapiens chromosome 8, clone RP11-6I2, complete sequence
          Length = 152061

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   tatgttgccctatgcatctc 204
             ||||||||||||||||||||
Sbjct: 98613 tatgttgccctatgcatctc 98594
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>gb|AC009274.11| Homo sapiens chromosome 7 clone RP11-254L11, complete sequence
          Length = 150505

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 471   aaactagtcatagaagagaa 490
             ||||||||||||||||||||
Sbjct: 76097 aaactagtcatagaagagaa 76116
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>ref|NM_001023133.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPCC1322.15),
           partial mRNA
          Length = 336

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 213 caacaaaaccagaatcatca 232
           ||||||||||||||||||||
Sbjct: 51  caacaaaaccagaatcatca 70
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 27      aacaatcatctccccgatca 46
               ||||||||||||||||||||
Sbjct: 9568570 aacaatcatctccccgatca 9568589
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 593      atcatgcggaattgcggata 612
                ||||||||||||||||||||
Sbjct: 27128087 atcatgcggaattgcggata 27128068
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>gb|M22434.1|HUMCEAC Homo sapiens clone hsCGM2 carcinoembryonic antigen (CEA) gene,
           partial cds
          Length = 781

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 129 agaaaccctttcctgcatccagac 152
           |||| |||||||||||||||||||
Sbjct: 751 agaatccctttcctgcatccagac 774
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>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1725_H08
          Length = 155431

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 593   atcatgcggaattgcggata 612
             ||||||||||||||||||||
Sbjct: 24536 atcatgcggaattgcggata 24517
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>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1486_E07
          Length = 110494

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 593   atcatgcggaattgcggata 612
             ||||||||||||||||||||
Sbjct: 99736 atcatgcggaattgcggata 99717
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>emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chromosome 2, complete
             sequence
          Length = 221009

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   ccaggcagtttcaagcaaga 327
             ||||||||||||||||||||
Sbjct: 31153 ccaggcagtttcaagcaaga 31134
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     caacaaaaccagaatcatca 232
               ||||||||||||||||||||
Sbjct: 1617816 caacaaaaccagaatcatca 1617797
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>emb|BX936364.6| Zebrafish DNA sequence from clone CH211-247G11 in linkage group 18,
             complete sequence
          Length = 146733

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   aaaaggcacaacaaaaccag 224
             ||||||||||||||||||||
Sbjct: 51303 aaaaggcacaacaaaaccag 51284
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>emb|AL049828.3|CNS0000A Human chromosome 14 DNA sequence BAC R-1074O12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 204116

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   cctttcctgcatccagacga 154
             ||||||||||||||||||||
Sbjct: 21344 cctttcctgcatccagacga 21325
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>gb|AC005797.1|AC005797 Homo sapiens chromosome 19, cosmid F13825, complete sequence
          Length = 39753

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   agaaaccctttcctgcatccagac 152
             |||| |||||||||||||||||||
Sbjct: 24524 agaatccctttcctgcatccagac 24501
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 27      aacaatcatctccccgatca 46
               ||||||||||||||||||||
Sbjct: 9640267 aacaatcatctccccgatca 9640286
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>emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g23, COMPLETE SEQUENCE
          Length = 133229

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   tagtcatagaagagaagaga 494
             ||||||||||||||||||||
Sbjct: 31957 tagtcatagaagagaagaga 31938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,447,562
Number of Sequences: 3902068
Number of extensions: 5447562
Number of successful extensions: 113178
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112991
Number of HSP's gapped (non-prelim): 187
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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