>CCD41_RAT (Q66H89) Coiled-coil domain-containing protein 41|
          Length = 692

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
 Frame = +1

Query: 1   AVCPTAFSDRASALLTVQT-LMSDLASLQSRIEKLEA----ASSKVFGGDRTRLRKVHEL 165
           +V PT  S R   L+  +T L+  L SL++ + +L A    + ++V    R ++R++ E+
Sbjct: 191 SVDPTRDSKRVEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEM 250

Query: 166 RETIRATEDAKCCALREYERIKE 234
           + T+R+ E  K  A  + ER+++
Sbjct: 251 QATLRSLEAEKQSAKLQAERLEK 273

>CCD41_MOUSE (Q9D5R3) Coiled-coil domain-containing protein 41|
          Length = 692

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
 Frame = +1

Query: 1   AVCPTAFSDRASALLTVQT-LMSDLASLQSRIEKLEA----ASSKVFGGDRTRLRKVHEL 165
           +V PT  S R   L+  +T L+  L SL++ + +L A    + ++V    R ++R++ E+
Sbjct: 191 SVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVENVQRIQVRQLAEM 250

Query: 166 RETIRATEDAKCCALREYERIKE 234
           + T+R+ E  K  A  + ER+++
Sbjct: 251 QATLRSLEAEKQSAKLQAERLEK 273

>SYSC_SCHPO (O14018) Seryl-tRNA synthetase, cytoplasmic (EC 6.1.1.11)|
           (Serine--tRNA ligase) (SerRS)
          Length = 450

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +1

Query: 64  SDLASLQSRIEKLEAASSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYE 222
           S+    QSR  ++     K+  GDR + + VH L  T+ ATE A CC L  Y+
Sbjct: 363 SNCTDYQSRNLEIRCGVKKM--GDREK-KYVHCLNSTLCATERALCCILENYQ 412

>SYS_ARATH (Q39230) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 451

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 46  TVQTLMSDLASLQSRIEKLEAASSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYER 225
           T + L+S       +  +LE    +    ++T+ + VH L  T+ ATE   CC L  Y+R
Sbjct: 355 TFRELVSCSNCTDYQARRLEIRYGQKKSNEQTK-QYVHMLNSTLTATERTICCILENYQR 413

>MAK2_SCHPO (O14002) Peroxide stress-activated histidine kinase mak2 (EC|
           2.7.13.3) (Mcs4-associated kinase 2) (His-Asp
           phosphorelay kinase phk1)
          Length = 2310

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 448 VI*DAFQIEDEPXFNLFFGYLSHRFAIV----WNVPIYF 552
           +I D   + D P  +L  G +SHR  I+    W+ P+ F
Sbjct: 528 IILDELHLADHPSLSLIIGMISHRLPILLILAWDEPVMF 566

>YCF1_LOTJA (Q9BBN6) Hypothetical 214.8 kDa protein ycf1|
          Length = 1793

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 112 SSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYERIKENNK 243
           SSK+F   +  +RK  EL+ +    E AK    +E E+IK+N K
Sbjct: 705 SSKIFFMFKNWIRKKKELKNSDYTDEKAKESQKKEEEKIKKNEK 748

>SYS_HELAN (O81983) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 438

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 64  SDLASLQSRIEKLEAASSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYERIK 231
           S+    QSR  KLE    +  G ++ + +  H L  T+ ATE   CC L  Y+  K
Sbjct: 360 SNCTDYQSR--KLEIRCGQKKGNEQAK-QYCHLLNSTLTATERTLCCILENYQTEK 412


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,587,393
Number of Sequences: 219361
Number of extensions: 1296250
Number of successful extensions: 3137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)