ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags26g07 |
|---|---|
| Clone Library Name | barley_pub |
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 247 bits (630), Expect = 2e-65 Identities = 122/184 (66%), Positives = 138/184 (75%), Gaps = 1/184 (0%) Frame = +2 Query: 62 MSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAED 241 MS R SRT+YVGNLPGDIRER VEDLF KYG +V IDLKVPPRPPGYAFVEF+D RDAED Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60 Query: 242 ACAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXX-XXHTDYR 418 A GRDGY+FDG+RLRVE AHGGR S + +++R Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120 Query: 419 VLVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTE 598 VLVTGLPSSASWQDLKDHMR+ GDVCFS+VYR+ GT G+ DYT Y+DMKYA+KKLDDTE Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180 Query: 599 FKNA 610 F+NA Sbjct: 181 FRNA 184
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 178 bits (452), Expect = 1e-44 Identities = 96/191 (50%), Positives = 123/191 (64%), Gaps = 4/191 (2%) Frame = +2 Query: 47 LQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDP 226 + RGG + +YVGNLPGD+RE+ VED+F+KYGRI +D+K R P +AFVEFED Sbjct: 1 MPRGGSE---DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDH 56 Query: 227 RDAEDACAGRDGYNFDGNRLRVEPAHG--GRGSGG-PSHDXXXXXXXXXXXXXXXXXXXX 397 RDAEDA RDGY FDG R+RVE G RG GG P D Sbjct: 57 RDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGG 116 Query: 398 -XXHTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYA 574 T YRV+V GLP + SWQDLKDHMR AGDVC+++V R+G G+ ++T Y+D+KYA Sbjct: 117 PQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYA 173 Query: 575 IKKLDDTEFKN 607 ++KLDDT+F++ Sbjct: 174 VRKLDDTKFRS 184
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 178 bits (451), Expect = 1e-44 Identities = 91/174 (52%), Positives = 115/174 (66%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP DIR + VED+FYKYG I DIDLK P +AFVEFEDPRDAEDA GRDGY Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76 Query: 266 NFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSS 445 ++DG RLRVE GRG G ++YRV+V+GLP S Sbjct: 77 DYDGYRLRVEFPRSGRGGG------RGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPS 130 Query: 446 ASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFKN 607 SWQDLKDHMR AGDVC+++V+R+G G+ ++ +DM YA++KLD+T+F++ Sbjct: 131 GSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 181
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 178 bits (451), Expect = 1e-44 Identities = 90/174 (51%), Positives = 116/174 (66%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP DIR + +ED+FYKYG I DIDLK P +AFVEFEDPRDAEDA GRDGY Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76 Query: 266 NFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSS 445 ++DG RLRVE GRG+G ++YRV+V+GLP S Sbjct: 77 DYDGYRLRVEFPRSGRGTG------RGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPS 130 Query: 446 ASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFKN 607 SWQDLKDHMR AGDVC+++V+R+G G+ ++ +DM YA++KLD+T+F++ Sbjct: 131 GSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 181
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 176 bits (445), Expect = 6e-44 Identities = 91/179 (50%), Positives = 115/179 (64%), Gaps = 5/179 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP DIR + VED+FYKYG I DIDLK P +AFVEFEDPRDAEDA RDGY Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76 Query: 266 NFDGNRLRVEPAHGGRGS-----GGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVT 430 ++DG RLRVE GRG GG ++YRV+V+ Sbjct: 77 DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVS 136 Query: 431 GLPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFKN 607 GLP S SWQDLKDHMR AGDVC+++V+R+G G+ ++ +DM YA++KLD+T+F++ Sbjct: 137 GLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 192
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 176 bits (445), Expect = 6e-44 Identities = 91/187 (48%), Positives = 117/187 (62%), Gaps = 13/187 (6%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP DIR + +ED+FYKYG I DIDLK P +AFVEFEDPRDAEDA GRDGY Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77 Query: 266 NFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXX-------------XXH 406 ++DG RLRVE GRG+GG Sbjct: 78 DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137 Query: 407 TDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKL 586 ++YRV+V+GLP S SWQDLKDHMR AGDVC+++V+R+G G+ ++ +DM YA++KL Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKL 194 Query: 587 DDTEFKN 607 D+T+F++ Sbjct: 195 DNTKFRS 201
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 176 bits (445), Expect = 6e-44 Identities = 90/174 (51%), Positives = 115/174 (66%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP DIR + +ED+FYKYG I DIDLK P +AFVEFEDPRDAEDA GRDGY Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76 Query: 266 NFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSS 445 ++DG RLRVE GRG+G ++ RV+V+GLP S Sbjct: 77 DYDGYRLRVEFPRSGRGTG------RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPS 130 Query: 446 ASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFKN 607 SWQDLKDHMR AGDVC+++VYR+G G+ ++ +DM YA++KLD+T+F++ Sbjct: 131 GSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 181
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 176 bits (445), Expect = 6e-44 Identities = 90/174 (51%), Positives = 115/174 (66%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP DIR + +ED+FYKYG I DIDLK P +AFVEFEDPRDAEDA GRDGY Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76 Query: 266 NFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSS 445 ++DG RLRVE GRG+G ++ RV+V+GLP S Sbjct: 77 DYDGYRLRVEFPRSGRGTG------RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPS 130 Query: 446 ASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFKN 607 SWQDLKDHMR AGDVC+++VYR+G G+ ++ +DM YA++KLD+T+F++ Sbjct: 131 GSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 181
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 176 bits (445), Expect = 6e-44 Identities = 90/174 (51%), Positives = 115/174 (66%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP DIR + +ED+FYKYG I DIDLK P +AFVEFEDPRDAEDA GRDGY Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76 Query: 266 NFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSS 445 ++DG RLRVE GRG+G ++ RV+V+GLP S Sbjct: 77 DYDGYRLRVEFPRSGRGTG------RGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPS 130 Query: 446 ASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFKN 607 SWQDLKDHMR AGDVC+++VYR+G G+ ++ +DM YA++KLD+T+F++ Sbjct: 131 GSWQDLKDHMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 181
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 166 bits (421), Expect = 4e-41 Identities = 90/176 (51%), Positives = 118/176 (67%), Gaps = 2/176 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP D+RE+ +EDLFYKYGRI +I+LK +AFV FEDPRDAEDA GR+GY Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75 Query: 266 NFDGNRLRVE--PAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLP 439 ++ RLRVE A+GGRG G P +D+RVLV+GLP Sbjct: 76 DYGQCRLRVEFPRAYGGRG-GWPR---------------ASRNGPPTRRSDFRVLVSGLP 119 Query: 440 SSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFKN 607 S SWQDLKDHMR AGDVC+++V ++G +G+ +Y +DM+YA++KLDDT+F++ Sbjct: 120 PSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 172
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 165 bits (418), Expect = 8e-41 Identities = 89/176 (50%), Positives = 117/176 (66%), Gaps = 2/176 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP D+RE+ +EDLFYKYGRI +I+LK +AFV FEDPRDAEDA GR+GY Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76 Query: 266 NFDGNRLRVE--PAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLP 439 ++ RLRVE +GGRG G P +D+RVLV+GLP Sbjct: 77 DYGQCRLRVEFPRTYGGRG-GWPR---------------GARNGPPTRRSDFRVLVSGLP 120 Query: 440 SSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFKN 607 S SWQDLKDHMR AGDVC+++V ++G +G+ +Y +DM+YA++KLDDT+F++ Sbjct: 121 PSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 173
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 165 bits (417), Expect = 1e-40 Identities = 89/176 (50%), Positives = 117/176 (66%), Gaps = 2/176 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IYVGNLP D+RE+ +EDLFYKYGRI +I+LK +AFV FEDPRDAEDA GR+GY Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75 Query: 266 NFDGNRLRVE--PAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLP 439 ++ RLRVE +GGRG G P +D+RVLV+GLP Sbjct: 76 DYGQCRLRVEFPRTYGGRG-GWPR---------------GGRNGPPTRRSDFRVLVSGLP 119 Query: 440 SSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFKN 607 S SWQDLKDHMR AGDVC+++V ++G +G+ +Y +DM+YA++KLDDT+F++ Sbjct: 120 PSGSWQDLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKLDDTKFRS 172
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 115 bits (288), Expect = 1e-25 Identities = 72/181 (39%), Positives = 96/181 (53%), Gaps = 10/181 (5%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +YVG LP +RER +E F YGR DI +K GY FVEFED RDA+DA +G Sbjct: 5 VYVGGLPYGVRERDLERFFKGYGRTRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 59 Query: 266 NFDGNRLRVEPAHG-GRGS---------GGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDY 415 G R+ VEPA G RGS GG T+Y Sbjct: 60 ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 119 Query: 416 RVLVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDT 595 R++V L S SWQDLKD+MR+AG+V +++ +++ G+ ++ + DMK AI+KLDDT Sbjct: 120 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE-GVVEFASLSDMKTAIEKLDDT 178 Query: 596 E 598 E Sbjct: 179 E 179 Score = 31.2 bits (69), Expect = 2.5 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 1/98 (1%) Frame = +2 Query: 35 NPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVE 214 N R G R + V NL + + ++D + G + D R G VE Sbjct: 104 NSRSSSRYGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGV--VE 161 Query: 215 FEDPRDAEDACAGRDGYNFDGNRLR-VEPAHGGRGSGG 325 F D + A D +G R+ VE GGR GG Sbjct: 162 FASLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRSGGG 199
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 114 bits (285), Expect = 2e-25 Identities = 66/171 (38%), Positives = 94/171 (54%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +Y+G L RER VE F YG+I+++DLK GY FVEF+D RDA+DA +G Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58 Query: 266 NFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSS 445 + G R+ VE A G R G T+YR++V L S Sbjct: 59 DLCGERVIVEHARGPRRDGS----YGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSR 114 Query: 446 ASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTE 598 SWQDLKD+MR+AG+V +++ ++ G G+ ++ +Y DMK A++KLD TE Sbjct: 115 CSWQDLKDYMRQAGEVTYADAHK-GRKNEGVIEFVSYSDMKRALEKLDGTE 164
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 114 bits (285), Expect = 2e-25 Identities = 66/171 (38%), Positives = 94/171 (54%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +Y+G L RER VE F YG+I+++DLK GY FVEF+D RDA+DA +G Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58 Query: 266 NFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSS 445 + G R+ VE A G R G T+YR++V L S Sbjct: 59 DLCGERVIVEHARGPRRDGS----YGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSR 114 Query: 446 ASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTE 598 SWQDLKD+MR+AG+V +++ ++ G G+ ++ +Y DMK A++KLD TE Sbjct: 115 CSWQDLKDYMRQAGEVTYADAHK-GRKNEGVIEFVSYSDMKRALEKLDGTE 164
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 111 bits (278), Expect = 1e-24 Identities = 64/173 (36%), Positives = 93/173 (53%), Gaps = 2/173 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +Y+G L ++RE+ ++ F YGR++++DLK GY FVEFED RDA+DA +G Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGK 58 Query: 266 NFDGNRLRVEPAHGGRGS--GGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLP 439 G R+ VE A G R G T+YR++V L Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118 Query: 440 SSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTE 598 S SWQDLKD MR+AG+V +++ ++E G+ ++ +Y DMK A+ KLD TE Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKLDGTE 170
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 105 bits (261), Expect = 1e-22 Identities = 68/175 (38%), Positives = 90/175 (51%), Gaps = 4/175 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++G L RE+ VE F YGRI DIDLK G+ FVEFEDPRDA+DA DG Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60 Query: 266 NFDGNRLRVEPAH----GGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTG 433 R+ +E A GGRG G S T+ R++V Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSD------RFSSRRPRNDRRNAPPVRTENRLIVEN 114 Query: 434 LPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTE 598 L S SWQDLKD MR+AG+V F++ +R G+ ++ +Y D+K AI+KL E Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKLSGKE 168
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 105 bits (261), Expect = 1e-22 Identities = 68/175 (38%), Positives = 90/175 (51%), Gaps = 4/175 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++G L RE+ VE F YGRI DIDLK G+ FVEFEDPRDA+DA DG Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60 Query: 266 NFDGNRLRVEPAH----GGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTG 433 R+ +E A GGRG G S T+ R++V Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSD------RFSSRRPRNDRRNAPPVRTENRLIVEN 114 Query: 434 LPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTE 598 L S SWQDLKD MR+AG+V F++ +R G+ ++ +Y D+K AI+KL E Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKLSGKE 168
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 100 bits (250), Expect = 3e-21 Identities = 66/171 (38%), Positives = 87/171 (50%), Gaps = 4/171 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++G L RE+ VE F YGRI DIDLK G+ FVEFEDPRDA+DA DG Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60 Query: 266 NFDGNRLRVEPAH----GGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTG 433 R+ +E A GGRG G S R++V Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGNDRRKCSTCKNRN------RLIVEN 114 Query: 434 LPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKL 586 L S SWQDLKD MR+AG+V F++ +R G+ ++ +Y D+K AI+KL Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKL 164
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 88.2 bits (217), Expect = 2e-17 Identities = 55/173 (31%), Positives = 80/173 (46%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 ++VG +P + D F YG+I+D L G+ FVE ED RDA D G Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM-----NGFGFVEVEDARDARDIVNDFQGK 60 Query: 266 NFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSS 445 F G+R+ VEPA G R T +R++V L Sbjct: 61 EFMGSRIVVEPARGER------------RRRENFRESAASKYPRPRRTGFRLIVENLSED 108 Query: 446 ASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTEFK 604 SWQDLKD MR+AG+ F++ +RE G G+ +++ +DM+ A+ L+ K Sbjct: 109 VSWQDLKDVMRKAGEPTFTDAHRENPGA-GVVEFSTEEDMRNALTSLNGEVIK 160
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 74.7 bits (182), Expect = 2e-13 Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 5/172 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +Y+G LP +R VE F YG++ D+ +K G+ FV+F+D RDA+DA +G Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGK 58 Query: 266 NFDGNRLRVEPAHGGRG----SGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTG 433 G R+ +E G G T +R+++ Sbjct: 59 ELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDN 118 Query: 434 LPSSASWQDLKDHMRRAG-DVCFSEVYREGGGTIGIADYTNYDDMKYAIKKL 586 L + SWQD+KDH+R+ G + +SE ++ I +T++DD++ A+ KL Sbjct: 119 LSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQ-AIVCFTSHDDLRDAMNKL 169
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 72.8 bits (177), Expect = 7e-13 Identities = 38/80 (47%), Positives = 50/80 (62%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +YVG LP D + +E++F ++GRI + V RPPG+AFVE++D RDAEDA DG Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGS 62 Query: 266 NFDGNRLRVEPAHGGRGSGG 325 G R RVE + G R GG Sbjct: 63 RICGVRARVELSTGQRRGGG 82
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 72.4 bits (176), Expect = 1e-12 Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 21/189 (11%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 IY+G L + E+ +E F YG+I D+ LK G+ FVEF+D RDAEDA +G Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK-----NGFGFVEFDDKRDAEDAVHDLNGK 59 Query: 266 NFDGNRLRVEPAH-------------GGRG-------SGGPSHDXXXXXXXXXXXXXXXX 385 G R+ ++ + GGRG SGG Sbjct: 60 ELGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRES 119 Query: 386 XXXXXXHTDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSEVYREGGGTIGIADYTNYDD 562 T +RV+V L S SWQDLKD +RR G + ++E ++ + + D Sbjct: 120 RYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNE--ALLCFATPSD 177 Query: 563 MKYAIKKLD 589 +K I+K D Sbjct: 178 LKRCIEKCD 186
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 69.3 bits (168), Expect = 8e-12 Identities = 42/95 (44%), Positives = 51/95 (53%), Gaps = 7/95 (7%) Frame = +2 Query: 68 RRWSRT--IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAED 241 R W +YVGNL + +E F KYG + ++ V PPG+AFVEFED RDAED Sbjct: 5 REWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAED 62 Query: 242 ACAGRDGYNFDGNRLRVEPAHG-----GRGSGGPS 331 A DG G R+RVE + G RG GG S Sbjct: 63 ATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSS 97
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 63.9 bits (154), Expect = 3e-10 Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 2/81 (2%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 R ++VGN + R+ +E LF KYGR+ +D+K GYAFV FED RDAEDA D Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMK-----SGYAFVYFEDERDAEDAIRKLD 56 Query: 260 GYNF--DGNRLRVEPAHGGRG 316 + F + RL VE A G RG Sbjct: 57 NFPFGYEKRRLSVEWAKGERG 77
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 63.5 bits (153), Expect = 5e-10 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 2/76 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +Y+G +P + RER VE YG+I +I +K G+AFV+FED RDAEDAC DG Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGK 58 Query: 266 NFDGN--RLRVEPAHG 307 +G+ RL VE A G Sbjct: 59 TMEGSSMRLVVEMARG 74
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 63.2 bits (152), Expect = 6e-10 Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 + ++ GN D RE +E LF KYG++ +D+K G+AFV ED RDAEDA D Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56 Query: 260 GYNF--DGNRLRVEPAHGGRGSGGPS 331 + + G RLRVE RG G S Sbjct: 57 RFEYGRTGRRLRVEWTKNDRGGAGRS 82
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 63.2 bits (152), Expect = 6e-10 Identities = 35/74 (47%), Positives = 45/74 (60%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +YVGNL + +E F YG + + + PPG+AFVEFEDPRDAEDA G DG Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70 Query: 266 NFDGNRLRVEPAHG 307 G+R+RVE + G Sbjct: 71 VICGSRVRVELSTG 84
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 63.2 bits (152), Expect = 6e-10 Identities = 35/74 (47%), Positives = 45/74 (60%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +YVGNL + +E F YG + + + PPG+AFVEFEDPRDAEDA G DG Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99 Query: 266 NFDGNRLRVEPAHG 307 G+R+RVE + G Sbjct: 100 VICGSRVRVELSTG 113
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 61.6 bits (148), Expect = 2e-09 Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 6/90 (6%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 + ++ GN D RE +E LF KYG++ +D+K G+AFV ED RDAEDA D Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56 Query: 260 GYNF--DGNRLRVEPAHGGRG----SGGPS 331 + F G RLRVE RG SGG S Sbjct: 57 RFEFGRKGRRLRVEWTKSERGGDKRSGGGS 86
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 61.2 bits (147), Expect = 2e-09 Identities = 35/78 (44%), Positives = 46/78 (58%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +YVGNL + + +E F YG + + V PPG+AFVEFEDPRDA DA DG Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69 Query: 266 NFDGNRLRVEPAHGGRGS 319 G R+RVE ++G + S Sbjct: 70 TLCGCRVRVELSNGEKRS 87
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 61.2 bits (147), Expect = 2e-09 Identities = 35/78 (44%), Positives = 46/78 (58%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +YVGNL + + +E F YG + + V PPG+AFVEFEDPRDA DA DG Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69 Query: 266 NFDGNRLRVEPAHGGRGS 319 G R+RVE ++G + S Sbjct: 70 TLCGCRVRVELSNGEKRS 87
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 59.3 bits (142), Expect = 9e-09 Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +++G L + E+A+E +F KYGRIV++ L + + G+AFV FE P DA+DA Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 257 DGYNFDGNRLRVEPA 301 +G + DG ++VE A Sbjct: 70 NGKSLDGKAIKVEQA 84
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 58.2 bits (139), Expect = 2e-08 Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 5/82 (6%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +YVGNL +++ +E F KYG++ + + PPG+AFVEFE DAE AC +G Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAF--NPPGFAFVEFEHRDDAEKACDILNGS 66 Query: 266 NFDGNRLRVE-----PAHGGRG 316 G++LRVE P G RG Sbjct: 67 ELLGSQLRVEISKGRPRQGRRG 88
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +++G L + E+A+E +F KYGRIV+I L + + G+AFV FE P DA+D Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 257 DGYNFDGNRLRVEPA 301 +G + DG ++VE A Sbjct: 70 NGKSLDGKAIKVEQA 84
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +++G L + E+A+E +F KYGRIV+I L + + G+AFV E P DA+DA Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDM 69 Query: 257 DGYNFDGNRLRVEPA 301 +G + DG ++VE A Sbjct: 70 NGKSLDGKAIKVEQA 84
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 53.9 bits (128), Expect = 4e-07 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG L D E+A+E +F KYG+I ++ + + R G+ FV FE+ DA+DA Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 257 DGYNFDGNRLRVEPA 301 +G + DG ++RV+ A Sbjct: 68 NGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 53.9 bits (128), Expect = 4e-07 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG L D E+A+E +F KYG+I ++ + + R G+ FV FE+ DA+DA Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 257 DGYNFDGNRLRVEPA 301 +G + DG ++RV+ A Sbjct: 68 NGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 53.9 bits (128), Expect = 4e-07 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG L D E+A+E +F KYG+I ++ + + R G+ FV FE+ DA+DA Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 257 DGYNFDGNRLRVEPA 301 +G + DG ++RV+ A Sbjct: 68 NGKSVDGRQIRVDQA 82
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 53.1 bits (126), Expect = 6e-07 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Frame = +2 Query: 26 PPFNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVD---IDLKVPPRPP 196 P +P R RG S +YVGNLP D+ +E LF ++G++V + + R Sbjct: 133 PRGSPERAPRGDFEP--SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSR 190 Query: 197 GYAFVEFEDPRDAEDACAGRDGYNFDGNRLRVEPA 301 G+ FV + DA A DG DG +RV A Sbjct: 191 GFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225 Score = 37.4 bits (85), Expect = 0.035 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VGNLP D+ + +F G + ++ + R G+ FV +AE A Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELL 116 Query: 257 DGYNFDGNRLRVEPAHGGRGS 319 +GY+ DG +L V A RGS Sbjct: 117 NGYDMDGRQLTVNKA-APRGS 136
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 52.8 bits (125), Expect = 8e-07 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG L D E+++E +F KYG+I ++ + + R G+ FV FE+ DA+DA Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 257 DGYNFDGNRLRVEPA 301 +G + DG ++RV+ A Sbjct: 68 NGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 52.8 bits (125), Expect = 8e-07 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG L D E+++E +F KYG+I ++ + + R G+ FV FE+ DA+DA Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 257 DGYNFDGNRLRVEPA 301 +G + DG ++RV+ A Sbjct: 68 NGKSVDGRQIRVDQA 82
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 52.8 bits (125), Expect = 8e-07 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 11/90 (12%) Frame = +2 Query: 89 YVGNLPGDIRERAVEDLFYKYGRIVD---IDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +VG L +RA+E F +YG ++D I+ + R G+ FV F+D + +DA G + Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 260 GYNFDGNRLRVEPAH--------GGRGSGG 325 G + DG + V A GGRG GG Sbjct: 71 GQDLDGRSITVNEAQSRGSGGGGGGRGGGG 100
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 52.8 bits (125), Expect = 8e-07 Identities = 48/209 (22%), Positives = 80/209 (38%), Gaps = 6/209 (2%) Frame = +2 Query: 2 EANPSLRPPPFNPHRLQRGGMSRRW-----SRTIYVGNLPGDIRERAVEDLFYKYGRIVD 166 E P PPP H R M R + ++V P D++E + ++F +G + + Sbjct: 94 EPQPYYPPPPPGEHMHGRPPMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKE 153 Query: 167 IDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXXX 346 + + G+AFVEFE+ A A +E HG + P Sbjct: 154 VKIL-----NGFAFVEFEEAESAAKA---------------IEEVHGKSFANQPLEVVYS 193 Query: 347 XXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSEVYREGG 523 YR+ + LP SWQDLKD R + FS V Sbjct: 194 KLPAKR----------------YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDF 237 Query: 524 GTIGIADYTNYDDMKYAIKKLDDTEFKNA 610 G ++ + + + A+++L++ EF+ + Sbjct: 238 DGTGALEFPSEEILVEALERLNNIEFRGS 266
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++ V NL + +F KYGR+ D+ + + G+AFV F D RDAEDA Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74 Query: 254 RDGYNFDGNRLRVEPAHGGR 313 DG DG LRV+ A GR Sbjct: 75 MDGAVLDGRELRVQMARYGR 94
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = +2 Query: 53 RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFED 223 RGG S S +YVGNL + + A+E LF + G++VD + + R G+ FV + Sbjct: 185 RGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 244 Query: 224 PRDAEDACAGRDGYNFDGNRLRVEPA 301 + +A DG + +G +RV PA Sbjct: 245 AEEVNNAIESLDGVDLNGRAIRVSPA 270 Score = 47.8 bits (112), Expect = 3e-05 Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 7/178 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 I+VGNL A+ +LF + G + +++ K+ R G+ FV + E AC Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 257 DGYNFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGL 436 +GY DG LRV SG P + RV V L Sbjct: 149 NGYELDGRALRV-------NSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNL 201 Query: 437 PSSASWQDLKDHMRRAGDVCFSEVY--REGGGT--IGIADYTNYDDMKYAIKKLDDTE 598 L+ G V ++V R+ G + G Y++ +++ AI+ LD + Sbjct: 202 AWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVD 259
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++ V NL + +F KYGR+ D+ + + G+AFV F D RDAEDA Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 254 RDGYNFDGNRLRVEPAHGGR 313 DG DG LRV+ A GR Sbjct: 74 MDGAVLDGRELRVQMARYGR 93
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++ V NL + +F KYGR+ D+ + + G+AFV F D RDAEDA Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 254 RDGYNFDGNRLRVEPAHGGR 313 DG DG LRV+ A GR Sbjct: 74 MDGAVLDGRELRVQMARYGR 93
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++ V NL + +F KYGR+ D+ + + G+AFV F D RDAEDA Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 254 RDGYNFDGNRLRVEPAHGGR 313 DG DG LRV+ A GR Sbjct: 74 MDGAVLDGRELRVQMARYGR 93
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 52.4 bits (124), Expect = 1e-06 Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++ V NL + +F KYGR+ D+ + + G+AFV F D RDAEDA Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 254 RDGYNFDGNRLRVEPAHGGR 313 DG DG LRV+ A GR Sbjct: 74 MDGAVLDGRELRVQMARYGR 93
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 52.4 bits (124), Expect = 1e-06 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = +2 Query: 53 RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFED 223 RGG S S +YVGNL + + A+E LF + G++VD + + R G+ FV + Sbjct: 179 RGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 238 Query: 224 PRDAEDACAGRDGYNFDGNRLRVEPA 301 + +A DG + +G +RV PA Sbjct: 239 AEEVNNAIESLDGVDLNGRAIRVSPA 264 Score = 46.6 bits (109), Expect = 6e-05 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 I+VGNLP A+ +LF + G + +++ K+ R G+ FV + E AC Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 257 DGYNFDGNRLRV 292 +GY DG LRV Sbjct: 149 NGYELDGRALRV 160
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 52.0 bits (123), Expect = 1e-06 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +++G L + E +E F KYGRI ++ + + R G+ FV FE+ DA+DA Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 257 DGYNFDGNRLRVEPAHGGRGSG 322 +G + DG ++RV+ A G+ SG Sbjct: 67 NGKSVDGRQIRVDQA--GKSSG 86
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 11/90 (12%) Frame = +2 Query: 89 YVGNLPGDIRERAVEDLFYKYGRIVD---IDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +VG L ER++E F ++G +VD I+ + R G+ FV F+D + +DA G + Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 260 GYNFDGNRLRVEPAH--------GGRGSGG 325 G + DG + V A GGRG GG Sbjct: 71 GQDLDGRSITVNEAQSRGSGAGGGGRGGGG 100
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 R+++VGN+P + E ++D+F + G +V L + +P GY F E++D A A Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 251 GRDGYNFDGNRLRVEPA 301 +G F G LRV+ A Sbjct: 76 NLNGREFSGRALRVDNA 92
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 R+++VGN+P + E ++D+F + G +V L + +P GY F E++D A A Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 251 GRDGYNFDGNRLRVEPA 301 +G F G LRV+ A Sbjct: 76 NLNGREFSGRALRVDNA 92
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 R+++VGN+P + E ++D+F + G +V L + +P GY F E++D A A Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 251 GRDGYNFDGNRLRVEPA 301 +G F G LRV+ A Sbjct: 76 NLNGREFSGRALRVDNA 92
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 R+++VGN+P + E ++D+F + G +V L + +P GY F E++D A A Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 251 GRDGYNFDGNRLRVEPA 301 +G F G LRV+ A Sbjct: 76 NLNGREFSGRALRVDNA 92
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 R+++VGN+P + E ++D+F + G +V L + +P GY F E++D A A Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 251 GRDGYNFDGNRLRVEPA 301 +G F G LRV+ A Sbjct: 76 NLNGREFSGRALRVDNA 92
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 R+++VGN+P + E ++D+F + G +V L + +P GY F E++D A A Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 251 GRDGYNFDGNRLRVEPA 301 +G F G LRV+ A Sbjct: 76 NLNGREFSGRALRVDNA 92
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 51.6 bits (122), Expect = 2e-06 Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 12/205 (5%) Frame = +2 Query: 23 PPPFNPHR----LQRGGMSR-RWSRTIYVGNLPGDIRERAVEDLFYKYGRI--VDIDLKV 181 PPP N + L RG + R + + V NLP + +A++D+F + G + D++L Sbjct: 212 PPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHADVELDG 271 Query: 182 PPRPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRG-SGGPSHDXXXXXXX 358 G V F D +D A +GY+ +GN L V+ S G D Sbjct: 272 DGVSTGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMDDSP 331 Query: 359 XXXXXXXXXXXXXXXHTDYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSEV-YREGGGTI 532 R++ + LP S + DL D G V +E+ Y G Sbjct: 332 VNEEARKFTENVVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPT 391 Query: 533 GIA--DYTNYDDMKYAIKKLDDTEF 601 GIA +Y N DD I++L++ + Sbjct: 392 GIAVVEYDNVDDADVCIERLNNYNY 416 Score = 39.3 bits (90), Expect = 0.009 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +2 Query: 56 GGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR--PPGYAFVEFEDPR 229 GG R +R IY NLP + + DLF G++ + +L+ + P G A VE+++ Sbjct: 345 GGGER--NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVD 402 Query: 230 DAEDACAGRDGYNFDGNRLRVEPA 301 DA+ + YN+ G L + A Sbjct: 403 DADVCIERLNNYNYGGCDLDISYA 426
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Frame = +2 Query: 89 YVGNLPGDIRERAVEDLFYKYGRIVD---IDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +VG L +RA+E F +YG ++D I+ + R G+ FV F+D + +DA G + Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 260 GYNFDGNRLRVEPAHGGRGSGG 325 G + DG + V A RGSGG Sbjct: 71 GQDLDGRSITVNEAQ-SRGSGG 91
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVP---PRPPGYAFVEFEDPRDAEDACAG 253 +++V N+ D R + F +YG IVD+ + + RP G+A+V+FED RDAEDA Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 254 RDGYNFDGNRLRVEPAHGGR 313 D G ++ ++ A G R Sbjct: 71 LDRKWICGRQIEIQFAQGDR 90
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 51.6 bits (122), Expect = 2e-06 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVP---PRPPGYAFVEFEDPRDAEDACAG 253 +++V N+ D R + F +YG IVD+ + + RP G+A+V+FED RDAEDA Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 254 RDGYNFDGNRLRVEPAHGGR 313 D G ++ ++ A G R Sbjct: 71 LDRKWICGRQIEIQFAQGDR 90
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = +2 Query: 53 RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFED 223 RGG S S +YVGNL + + A+++LF + G +VD + + R G+ FV + Sbjct: 199 RGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSS 258 Query: 224 PRDAEDACAGRDGYNFDGNRLRVEPA 301 ++ DA +G + DG +RV A Sbjct: 259 AKEVNDAIDSLNGIDLDGRSIRVSAA 284 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 12/94 (12%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VGNLP + A+ LF + G + +++ K+ R G+ FV + E A Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 257 DGYNFDGNRLRV---------EPAHGGRGSGGPS 331 +GY DG +RV E + G G GG S Sbjct: 150 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNS 183
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Frame = +2 Query: 53 RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFED 223 RGG S S +YVGNL + + A+++LF + G +VD + + R G+ FV + Sbjct: 198 RGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSS 257 Query: 224 PRDAEDACAGRDGYNFDGNRLRVEPA 301 ++ DA +G + DG +RV A Sbjct: 258 SKEVNDAIDSLNGVDLDGRSIRVSAA 283 Score = 41.6 bits (96), Expect = 0.002 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 13/184 (7%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VGNLP + A+ LF + G + +++ K+ R G+ FV + E A Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 257 DGYNFDGNRLRVE--PAHGGRGS----GGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYR 418 +GY DG +RV PA R + GG + + R Sbjct: 149 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNR 208 Query: 419 VLVTGLPSSASWQDLKDHMRRAGDVCFSEVY--REGGGT--IGIADYTNYDDMKYAIKKL 586 V V L LK+ G+V ++V R+ G + G Y++ ++ AI L Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268 Query: 587 DDTE 598 + + Sbjct: 269 NGVD 272
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 50.1 bits (118), Expect = 5e-06 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +YVGNLP D+ +E LF ++G++V+ + + R G+ FV D + +A + Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305 Query: 257 DGYNFDGNRLRVEPA 301 DG N +G +RV A Sbjct: 306 DGQNLEGRAIRVNVA 320
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 50.1 bits (118), Expect = 5e-06 Identities = 38/96 (39%), Positives = 49/96 (51%), Gaps = 10/96 (10%) Frame = +2 Query: 62 MSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVP----PRPPGYAFVEFEDPR 229 MSRR RT+YV +R R + F +G ++ D+ +P RP +AFVE+ED R Sbjct: 1 MSRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRP--FAFVEYEDSR 58 Query: 230 DAEDACAGRDGYNFD--GNRLRVE----PAHGGRGS 319 DAEDA G + G LRVE P G GS Sbjct: 59 DAEDAYYEVHGRRLERGGGVLRVEWAKQPPPSGPGS 94
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 50.1 bits (118), Expect = 5e-06 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Frame = +2 Query: 20 RPPPFNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP- 196 +PP + +R S + ++ +++G L ++ + + ++F YG+I ID+ V P Sbjct: 142 KPPKRDEKERKRRSPSPKPTK-VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200 Query: 197 ---GYAFVEFEDPRDAEDACAGRDGYNFDGNRL 286 GYA+VEFE+P +AE A DG DG + Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 50.1 bits (118), Expect = 5e-06 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Frame = +2 Query: 20 RPPPFNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP- 196 +PP + +R S + ++ +++G L ++ + + ++F YG+I ID+ V P Sbjct: 142 KPPKRDEKERKRRSPSPKPTK-VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200 Query: 197 ---GYAFVEFEDPRDAEDACAGRDGYNFDGNRL 286 GYA+VEFE+P +AE A DG DG + Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 50.1 bits (118), Expect = 5e-06 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Frame = +2 Query: 20 RPPPFNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP- 196 +PP + +R S + ++ +++G L ++ + + ++F YG+I ID+ V P Sbjct: 142 KPPKRDEKERKRRSPSPKPTK-VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200 Query: 197 ---GYAFVEFEDPRDAEDACAGRDGYNFDGNRL 286 GYA+VEFE+P +AE A DG DG + Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 50.1 bits (118), Expect = 5e-06 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Frame = +2 Query: 20 RPPPFNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP- 196 +PP + +R S + ++ +++G L ++ + + ++F YG+I ID+ V P Sbjct: 142 KPPKRDEKERKRRSPSPKPTK-VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200 Query: 197 ---GYAFVEFEDPRDAEDACAGRDGYNFDGNRL 286 GYA+VEFE+P +AE A DG DG + Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 50.1 bits (118), Expect = 5e-06 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Frame = +2 Query: 20 RPPPFNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP- 196 +PP + +R S + ++ +++G L ++ + + ++F YG+I ID+ V P Sbjct: 142 KPPKRDEKERKRRSPSPKPTK-VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH 200 Query: 197 ---GYAFVEFEDPRDAEDACAGRDGYNFDGNRL 286 GYA+VEFE+P +AE A DG DG + Sbjct: 201 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 233
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 49.7 bits (117), Expect = 7e-06 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 9/92 (9%) Frame = +2 Query: 53 RGGMSRRWSRT------IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYA 205 RG R RT IYVGN+P DI + +E +F ++G++V + + R G+ Sbjct: 176 RGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFG 235 Query: 206 FVEFEDPRDAEDACAGRDGYNFDGNRLRVEPA 301 FV + +A A DG DG +RV A Sbjct: 236 FVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267 Score = 33.1 bits (74), Expect = 0.66 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VGNLP DI + LF + G + ++ + R G+ FV +A+ A Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELY 158 Query: 257 DGYNFDGNRLRVEPAHGGRGS 319 Y+ +G L V A RGS Sbjct: 159 SQYDLNGRLLTVNKA-APRGS 178
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 49.3 bits (116), Expect = 9e-06 Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Frame = +2 Query: 56 GGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDP 226 GG +YVGNL + + A+E LF + G++V+ + + R G+ FV ++ Sbjct: 196 GGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSS 255 Query: 227 RDAEDACAGRDGYNFDGNRLRVEPA 301 ++ ++A DG + DG ++RV A Sbjct: 256 QEVQNAIKSLDGADLDGRQIRVSEA 280 Score = 40.4 bits (93), Expect = 0.004 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VGNLP ++ + LF G + +++ K+ R G+ FV + E A Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 257 DGYNFDGNRLRV 292 +GY DG LRV Sbjct: 153 NGYELDGRPLRV 164
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKV----PPRPPGYAFVEFEDPRDAEDACAG 253 +++G L ++ + + ++F YG+I ID+ V P GYA+VEFE P +AE A Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKH 199 Query: 254 RDGYNFDGNRL 286 DG DG + Sbjct: 200 MDGGQIDGQEI 210
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDAC 247 S IYVGN+P I + +E LF ++G++V + + R G+ FV + DA Sbjct: 229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAI 288 Query: 248 AGRDGYNFDGNRLRVEPA 301 A DG + DG +RV A Sbjct: 289 ANLDGQSLDGRTIRVNVA 306 Score = 31.6 bits (70), Expect = 1.9 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP----GYAFVEFEDPRDAEDACAG 253 ++VGNLP D+ + LF + G +V+I + R G+ FV +AE A Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAG-VVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196 Query: 254 RDGYNFDGNRLRVEPA 301 + Y+ +G L V A Sbjct: 197 YNRYDVNGRLLTVNKA 212
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG L + E+A+ED F +G I ++ + + R G+ F+ F +P A DA Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 257 DGYNFDGNRLRVEPAHGGRGSGG 325 +G + DG ++RV+ H G+ + G Sbjct: 68 NGESLDGRQIRVD--HAGKSARG 88
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein| Length = 121 Score = 47.8 bits (112), Expect = 3e-05 Identities = 26/64 (40%), Positives = 36/64 (56%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 +R +YV NLP I + D+F K+G I I + P G AFV +ED DA++AC Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73 Query: 257 DGYN 268 G+N Sbjct: 74 SGFN 77
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 47.8 bits (112), Expect = 3e-05 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Frame = +2 Query: 89 YVGNLPGDIRERAVEDLFYKYGRIVD---IDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +VG L + ++E F ++G I D I+ + R G+ FV F+D + DA G + Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68 Query: 260 GYNFDGNRLRVEPAHGGRGSGG 325 G DG + V A RGSGG Sbjct: 69 GQELDGRNITVNEAQ-SRGSGG 89
>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/64 (39%), Positives = 36/64 (56%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 +R +Y+ NLP I + D+F KYG I I + P G A+V +ED DA++AC Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77 Query: 257 DGYN 268 G+N Sbjct: 78 SGFN 81
>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/64 (39%), Positives = 36/64 (56%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 +R +Y+ NLP I + D+F KYG I I + P G A+V +ED DA++AC Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77 Query: 257 DGYN 268 G+N Sbjct: 78 SGFN 81
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR---PPGYAFVEFEDPRDAED 241 R S ++V NLP D E +E +F K+G+I +I + R G+A+V++ +P A Sbjct: 298 RLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQ 357 Query: 242 ACAGRDGYNFDGNRLRVEPA 301 A DG +F G + + PA Sbjct: 358 AYKELDGKHFQGRLMHILPA 377 Score = 34.7 bits (78), Expect = 0.23 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYG--RIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 I + NLP ++ V LF YG R V + K G+ F +F R+AE+A Sbjct: 704 IIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALK 763 Query: 260 GYNFDGNRLRVEPAH 304 + G RL +E A+ Sbjct: 764 NTHLLGRRLVLEFAN 778 Score = 34.3 bits (77), Expect = 0.29 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP--------GYAFVEFEDPRDAE 238 T++V NL ++F V +K P P G+ FV+F A+ Sbjct: 598 TLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQ 657 Query: 239 DACAGRDGYNFDGNRLRVEPAH 304 A A DGY D + L V ++ Sbjct: 658 AALAAMDGYKLDQHELVVRASN 679
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/72 (33%), Positives = 39/72 (54%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 +RT+++GNL + ++F ++G IVDID+K P YAF+++ D A Sbjct: 438 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKM 497 Query: 257 DGYNFDGNRLRV 292 DG NRL++ Sbjct: 498 DGEYLGNNRLKL 509 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPG--YAFVEFEDPRDAEDA 244 R +R ++VGNLP ++RE + + F +YGR+ + + G AFV+F D + A+ A Sbjct: 3 RETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62 Score = 31.6 bits (70), Expect = 1.9 Identities = 21/88 (23%), Positives = 43/88 (48%) Frame = +2 Query: 41 HRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFE 220 +RL+ G + +++ L ++ ++ + F +YG +V + V R G A V + Sbjct: 505 NRLKLGFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKV---VFDRLKGMALVLYS 561 Query: 221 DPRDAEDACAGRDGYNFDGNRLRVEPAH 304 + DA+ A G GN+++V+ A+ Sbjct: 562 EIEDAQAAVKETKGRKIGGNKIKVDFAN 589
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKV---PPRPPGYAFVEFEDPRDAEDACA 250 RTIYVG L ++ ER + + F +G I DI + R G+AF+E+E DA A Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65 Query: 251 GRDGYNFDGNRLRVEPA 301 + G +RV A Sbjct: 66 NMNDSELCGRTIRVNLA 82
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/72 (33%), Positives = 39/72 (54%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 +RT+++GNL + ++F ++G IVDID+K P YAF+++ D A Sbjct: 437 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKM 496 Query: 257 DGYNFDGNRLRV 292 DG NRL++ Sbjct: 497 DGEYLGNNRLKL 508 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPG--YAFVEFEDPRDAEDA 244 R +R ++VGNLP ++RE + + F +YGR+ + + G AFV+F D + A+ A Sbjct: 3 RETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 47.0 bits (110), Expect = 4e-05 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVP---PRPPGYAFVEFEDPRDAEDACAG 253 ++++ N+ R + F +YG IVD+ + + RP G+A+V+FED RDAEDA Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70 Query: 254 RDGYNFDGNRLRVEPAHGGRGSGG 325 + G ++ ++ A G R + G Sbjct: 71 LNRKWVCGRQIEIQFAQGDRKTPG 94
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++GNLP + E+ + LF +YG++++ D+ Y FV ED AEDA Y Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58 Query: 266 NFDGNRLRVE 295 G + VE Sbjct: 59 KLHGVNINVE 68 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S ++VGN+ + + F +YG +++ D+ YAFV E DA +A G Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGL 131 Query: 257 DGYNFDGNRLRVE 295 D F G R+ V+ Sbjct: 132 DNTEFQGKRMHVQ 144
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++GNLP + E+ + LF +YG++++ D+ Y FV ED AEDA Y Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58 Query: 266 NFDGNRLRVE 295 G + VE Sbjct: 59 KLHGVNINVE 68 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S ++VGN+ + + F +YG +++ D+ YAFV E DA +A G Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGL 131 Query: 257 DGYNFDGNRLRVE 295 D F G R+ V+ Sbjct: 132 DNTEFQGKRMHVQ 144
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++GNLP + E+ + LF +YG++++ D+ Y FV ED AEDA Y Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58 Query: 266 NFDGNRLRVE 295 G + VE Sbjct: 59 KLHGVNINVE 68 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S ++VGN+ + + F +YG +++ D+ YAFV E DA +A G Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGL 131 Query: 257 DGYNFDGNRLRVE 295 D F G R+ V+ Sbjct: 132 DNTEFQGKRMHVQ 144
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++GNLP + E+ + LF +YG++++ D+ Y FV ED AEDA Y Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58 Query: 266 NFDGNRLRVE 295 G + VE Sbjct: 59 KLHGVNINVE 68 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S ++VGN+ + + F +YG +++ D+ YAFV E DA +A G Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGL 131 Query: 257 DGYNFDGNRLRVE 295 D F G R+ V+ Sbjct: 132 DNTEFQGKRMHVQ 144
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++GNLP + E+ + LF +YG++++ D+ Y FV ED AEDA Y Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58 Query: 266 NFDGNRLRVE 295 G + VE Sbjct: 59 KLHGVNINVE 68 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S ++VGN+ + + F +YG +++ D+ YAFV E DA +A G Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGL 131 Query: 257 DGYNFDGNRLRVE 295 D F G R+ V+ Sbjct: 132 DNTEFQGKRMHVQ 144
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++GNLP + E+ + LF +YG++++ D+ Y FV ED AEDA Y Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58 Query: 266 NFDGNRLRVE 295 G + VE Sbjct: 59 KLHGVNINVE 68 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S ++VGN+ + + F +YG +++ D+ YAFV E DA +A G Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGL 131 Query: 257 DGYNFDGNRLRVE 295 D F G R+ V+ Sbjct: 132 DNTEFQGKRMHVQ 144
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++GNLP + E+ + LF +YG++++ D+ Y FV ED AEDA Y Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58 Query: 266 NFDGNRLRVE 295 G + VE Sbjct: 59 KLHGVNINVE 68 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S ++VGN+ + + F +YG +++ D+ YAFV E DA +A G Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGL 131 Query: 257 DGYNFDGNRLRVE 295 D F G R+ V+ Sbjct: 132 DNTEFQGKRMHVQ 144
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 7/90 (7%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG L + E+A+ED F +G I ++ + + R G+ F+ F +P A A Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 257 DGYNFDGNRLRVE----PAHGGRGSGGPSH 334 +G + DG ++RV+ A G RG G +H Sbjct: 68 NGESLDGRQIRVDHAGKSARGTRGGGFGAH 97
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 46.6 bits (109), Expect = 6e-05 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL--KVPPRPPGYAFVEFEDPRDAEDACAGRD 259 I+V NL + + +LF +G I D+ L K+ + G A+VEFE P +A+ A AGRD Sbjct: 726 IFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGRD 785 Query: 260 GYNFDGNRLRV 292 G F G + V Sbjct: 786 GCLFKGMNISV 796
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 46.2 bits (108), Expect = 7e-05 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 11/94 (11%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 + ++VG L D E+++ D F +G IVDI++ K + G+AFVEF+D D D Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDD-YDPVDKVV 180 Query: 251 GRDGYNFDGNRLRVEPA--------HGGRGSGGP 328 + + +G + V+ A GG G GGP Sbjct: 181 LQKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGP 214
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 45.8 bits (107), Expect = 1e-04 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAEDAC 247 SR +Y+G++P D E + DL G ++++ + P R GYAF+EF D + A Sbjct: 17 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 76 Query: 248 AGRDGYNFDGNRLR 289 +GY L+ Sbjct: 77 RNLNGYQLGSRFLK 90
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/64 (39%), Positives = 35/64 (54%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 +R +YV NLP +I + D+F KYG I I + G AFV +ED DA++A Sbjct: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHL 77 Query: 257 DGYN 268 G+N Sbjct: 78 SGFN 81
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Frame = +2 Query: 119 ERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLR 289 ER + ++F KYG I D+ + + R G+AFV FE+ DA++A +G DG R+R Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190 Query: 290 VE 295 V+ Sbjct: 191 VD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Frame = +2 Query: 119 ERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLR 289 ER + ++F KYG I D+ + + R G+AFV FE+ DA++A +G DG R+R Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190 Query: 290 VE 295 V+ Sbjct: 191 VD 192
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Frame = +2 Query: 119 ERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLR 289 ER + ++F KYG I D+ + + R G+AFV FE+ DA++A +G DG R+R Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190 Query: 290 VE 295 V+ Sbjct: 191 VD 192
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%) Frame = +2 Query: 50 QRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP----RPPGYAFVEF 217 Q+GG R S+T+ V NL E +++LF K I K+P RP GYAFVEF Sbjct: 452 QKGGGERE-SKTLIVNNLSYAASEETLQELFKKATSI-----KMPQNNQGRPKGYAFVEF 505 Query: 218 EDPRDAEDACAGRDGYNFDGNRLRVE 295 DA++A + +G +R+E Sbjct: 506 PTAEDAKEALNSCNNTEIEGRAIRLE 531 Score = 35.4 bits (80), Expect = 0.13 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%) Frame = +2 Query: 53 RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRD 232 RGG +++ S+T++V L D E + + F + + G+ FV+F P D Sbjct: 545 RGGFNQQ-SKTLFVRGLSEDTTEETLRESFEGSISARIVTDRDTGSSKGFGFVDFSSPED 603 Query: 233 AEDACAGRDGYNFDGNRLRVEPAH--------GGRGSG 322 A+ A + DGN++ ++ A GG G G Sbjct: 604 AKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGFGGG 641 Score = 34.7 bits (78), Expect = 0.23 Identities = 21/75 (28%), Positives = 39/75 (52%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACA 250 R +RT++V NLP + E ++++F + V + L G A++EF+ +AE A Sbjct: 368 RDARTLFVKNLPYRVTEDEMKNVF-ENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALE 426 Query: 251 GRDGYNFDGNRLRVE 295 + G DG + ++ Sbjct: 427 EKQGTEVDGRAMVID 441
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 +T++V + D E + F YG I I + K +P GYAF+E+E RD A Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 Query: 251 GRDGYNFDGNRLRVEPAHG 307 DG DG R+ V+ G Sbjct: 163 HADGKKIDGRRVLVDVERG 181
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 +T++V + D E + F YG I I + K +P GYAF+E+E RD A Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYK 162 Query: 251 GRDGYNFDGNRLRVEPAHG 307 DG DG R+ V+ G Sbjct: 163 HADGKKIDGRRVLVDVERG 181
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 45.1 bits (105), Expect = 2e-04 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLK---VPPRPPGYAFVEFEDPRDAEDACAGR 256 IY+ NLP ++ E V +L +G ++ L G+ F EF++P DAE A +G Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371 Query: 257 DGYNFDGNRLRVE 295 DG + GN+L + Sbjct: 372 DGKDTYGNKLHAQ 384
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 45.1 bits (105), Expect = 2e-04 Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 16/107 (14%) Frame = +2 Query: 23 PPPFNPHRLQRGGMSR----------RWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDID 172 PPP HR R R + SR I V L + + V +LF KYG I I Sbjct: 68 PPPEPRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQ 127 Query: 173 LKVPP---RPPGYAFVEFE---DPRDAEDACAGRDGYNFDGNRLRVE 295 + + R G+ F+ FE D R A+D+C+G + DG R+RV+ Sbjct: 128 MVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIE---VDGRRIRVD 171
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 9/108 (8%) Frame = +2 Query: 20 RPPPFNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---R 190 +P N + G S T+++GNL + A+ +LF K+G +V + + P + Sbjct: 247 KPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQ 306 Query: 191 PPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLRVEPA------HGGRG 316 P G+ +V+F + DA+ A G D +R++ + GGRG Sbjct: 307 PKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRG 354 Score = 31.2 bits (69), Expect = 2.5 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 TI+VG L I + ++ F G ++ + + R GY +V+FE+ AE A Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228 Query: 254 RDGYNFDGNRLRVE 295 G DG + + Sbjct: 229 MQGKEIDGRPINCD 242
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 +T++V + D E + F YG I I + K +P GYAF+E+E RD A Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162 Query: 251 GRDGYNFDGNRLRVEPAHG 307 DG DG R+ V+ G Sbjct: 163 HADGKKIDGRRVLVDVERG 181
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAEDAC 247 S ++V NLP E +E LF KYG + ++ + +P G+AF+ F P A A Sbjct: 401 SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAY 460 Query: 248 AGRDGYNFDGNRLRVEPA 301 + DG F G L V P+ Sbjct: 461 SEVDGQVFQGRMLHVLPS 478 Score = 37.0 bits (84), Expect = 0.045 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPG------YAFVEFEDPRDAEDA 244 T+++ NL D E ++++F K G + + G + FVE+ P A+ A Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790 Query: 245 CAGRDGYNFDGNRLRV 292 G+ DG++L V Sbjct: 791 LKQLQGHVVDGHKLEV 806
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 44.7 bits (104), Expect = 2e-04 Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 11/85 (12%) Frame = +2 Query: 104 PGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGRDGYNFD 274 P D+R F +YG I D+ + K + G+ FV F + RDAE A DG D Sbjct: 32 PNDLRRT-----FERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVD 86 Query: 275 GNRLRVEPA--------HGGRGSGG 325 G LRV A GGRG GG Sbjct: 87 GRELRVTLAKYDRPSDERGGRGGGG 111
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 44.7 bits (104), Expect = 2e-04 Identities = 25/72 (34%), Positives = 36/72 (50%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 +R +Y+ NLP I + ++F K+G + I + G AFV +ED DA+ AC Sbjct: 18 NRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHL 77 Query: 257 DGYNFDGNRLRV 292 GYN L V Sbjct: 78 SGYNVSNRYLVV 89
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 44.7 bits (104), Expect = 2e-04 Identities = 44/181 (24%), Positives = 65/181 (35%), Gaps = 4/181 (2%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP-RPPGYAFVEFEDPRDAEDA 244 R + +I+V NL D +++LF G +V+ D+ G VEF +DA Sbjct: 118 RNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSKGHHRGMGTVEFTKNESVQDA 177 Query: 245 CAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVL 424 + DG F +L V R P + V Sbjct: 178 ISKFDGALFMDRKLMV------RQDNPPPE---------AAKEFSKKATREEIDNGFEVF 222 Query: 425 VTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGG---TIGIADYTNYDDMKYAIKKLDDT 595 + LP S +WQ LKD + G V ++V + G G Y D+M AI + Sbjct: 223 IINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFNGM 282 Query: 596 E 598 E Sbjct: 283 E 283 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAEDACAGRD 259 IY NLP + DLF G+I + +LK +P G A VE+E+ DA+ + Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENLVDADFCIQKLN 410 Query: 260 GYNFDGNRLRVEPA 301 YN+ G L++ A Sbjct: 411 NYNYGGCSLQISYA 424
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR---PPGYAFVEFEDPRDAED 241 R S ++V NL + +E +E +F +G+I +I + R G+A+V++ DP A + Sbjct: 292 RISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVE 351 Query: 242 ACAGRDGYNFDGNRLRVEPA 301 A DG F G L + PA Sbjct: 352 AYRNLDGKIFQGRLLHILPA 371 Score = 34.7 bits (78), Expect = 0.23 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYG--RIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 I + NLP ++ V LF YG R V + K G+ F +F R+AE+A Sbjct: 699 IIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRSARGFGFADFVSAREAENAMDALK 758 Query: 260 GYNFDGNRLRVEPAH 304 + G RL +E A+ Sbjct: 759 NTHLLGRRLVLEFAN 773 Score = 33.9 bits (76), Expect = 0.38 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP--------GYAFVEFEDPRDAE 238 T+++ NL +++ + F V +K P P G+ F +F+ A+ Sbjct: 593 TLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQ 652 Query: 239 DACAGRDGYNFDGNRLRVEPAHGG 310 A A +GY D + L V +H G Sbjct: 653 AALAVMNGYTLDRHTLVVRASHKG 676
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+LP D+ E + D F G ++ I + + R GYA+V F+ P DAE A Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERAL-- 60 Query: 254 RDGYNFD 274 D NFD Sbjct: 61 -DTMNFD 66 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL--KVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +YV N D + +++ F YG+I + K + G+ FV FE AE A + Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244 Query: 260 GYNF-DGNRLRVEPA 301 G + +G L V A Sbjct: 245 GKDMGEGKSLYVARA 259
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 +T++V L + E ++ F YG I + L ++ +P GYAF+E+ RD + A Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197 Query: 251 GRDGYNFDGNRLRVEPAHG 307 DG DG R+ V+ G Sbjct: 198 QADGQKIDGRRVLVDVERG 216
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 + ++VG + ++ E + D F +YG +V + K + G+AFVEF+D + C Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICL 167 Query: 251 GRDGYNFDGNRLRVE------PAHGGRGSGG 325 R+ + G + V+ A GGRG GG Sbjct: 168 SRN-HQIRGKHIDVKKALPKGDAPGGRGGGG 197
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 14/103 (13%) Frame = +2 Query: 59 GMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPR 229 G R S +++G L + ++ D F +G +VD + V R G+ FV F D Sbjct: 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEG 87 Query: 230 DAEDACAGRDGYNFDGNRLRVEPAH-----------GGRGSGG 325 A A + DG +G +RV PA+ GG SGG Sbjct: 88 AATAAISEMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSGG 130
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 44.3 bits (103), Expect = 3e-04 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRI--VDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 I V NLP + + V +LF +G++ V + K G+AFVEF P++AE+A Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFVLPKEAENAMDQLQ 799 Query: 260 GYNFDGNRLRVEPA 301 G + G RL ++PA Sbjct: 800 GVHLLGRRLVMQPA 813 Score = 34.7 bits (78), Expect = 0.23 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 10/89 (11%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP--------GYAFVEFEDPRDAE 238 +I++ NL + + D F + V +K P P G+ FVEF A Sbjct: 641 SIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTKEQAT 700 Query: 239 DACAGRDGYNFDGNRLRVEPAH--GGRGS 319 + DG DG++++++ +H G GS Sbjct: 701 AVISAMDGTVIDGHKIQLKLSHRQGNAGS 729 Score = 29.3 bits (64), Expect = 9.5 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---PGYAFVEFEDPRDAEDACAGR 256 +++ N+ E + LF YG + ++ + V R G+A+V F P +A A Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIEL 386 Query: 257 DGYNFDGNRLRV 292 D F G L + Sbjct: 387 DKQIFQGRLLHI 398
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 43.9 bits (102), Expect = 4e-04 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 12/96 (12%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S +++GNLP ++ + ++D F YG +V++ + + P + FV F+D + + R Sbjct: 339 SHQLFIGNLPHEVDKSELKDFFQSYGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNR 398 Query: 257 DGYNFDGNRLRVE-----PAHGG-------RGSGGP 328 RL VE A G RG GGP Sbjct: 399 PIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGP 434
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDP 226 RTI++G LP D+ E ++ F K+G I I + K+ + GYAF+ F+DP Sbjct: 107 RTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDP 158
>MSA1_SCHPO (Q10277) Multicopy suppressor of sporulation protein msa1| Length = 533 Score = 43.9 bits (102), Expect = 4e-04 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Frame = +2 Query: 8 NPSLR----PPPFNPHRLQRGGMSRRWSRTIYVGNL-PGDIRERAVEDLFYKYGRIVDID 172 NPS+ PPP +P+ +I+VG L P + + DLF KYG+++D Sbjct: 350 NPSMMFAAMPPPIDPY-------------SIFVGQLDPVNCTHYLLVDLFSKYGKVIDCK 396 Query: 173 LKVPPRPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLRVE 295 + + P +AF+ F+ + A A G+ LRVE Sbjct: 397 IIHQSKKPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVE 437 Score = 32.3 bits (72), Expect = 1.1 Identities = 17/62 (27%), Positives = 31/62 (50%) Frame = +2 Query: 128 VEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHG 307 V+D F ++G ++ + + Y+FV+F++ DA A + DG +R+E A Sbjct: 99 VKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIERAKV 158 Query: 308 GR 313 R Sbjct: 159 NR 160
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 43.5 bits (101), Expect = 5e-04 Identities = 24/87 (27%), Positives = 42/87 (48%) Frame = +2 Query: 32 FNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFV 211 F P+ + + +RT+++GNL DI + F +G I++ID+K YAF Sbjct: 640 FRPYEAELDEYHPKSTRTLFIGNLEKDITAGELRSHFEAFGEIIEIDIK-KQGLNAYAFC 698 Query: 212 EFEDPRDAEDACAGRDGYNFDGNRLRV 292 ++ D A DG + NR+++ Sbjct: 699 QYSDIVSVVKAMRKMDGEHLGSNRIKL 725
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 43.5 bits (101), Expect = 5e-04 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 10/89 (11%) Frame = +2 Query: 89 YVGNLPGDIRERAVEDLFYKYGRIVD---IDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +VG L + +E F ++G ++D I+ + R G+ FV F+D + +DA + Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68 Query: 260 GYNFDGNRLRVEPAH-------GGRGSGG 325 G DG + V A GGRG GG Sbjct: 69 GKELDGRTITVNEAQSRGGGGGGGRGGGG 97
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL--KVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +++G L + E+ ++ +F K+G I ++ L + G+AF+ FE+P DA++A + Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 Query: 260 GYNFDGNRLRVEPA 301 G + G ++VE A Sbjct: 70 GKSLHGKAIKVEQA 83
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 43.1 bits (100), Expect = 6e-04 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 12/96 (12%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S +++GNLP ++ + ++D F +G +V++ + + P + FV F+D + + R Sbjct: 337 SHQLFIGNLPHEVDKSELKDFFQNFGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNR 396 Query: 257 DGYNFDGNRLRVE-----PAHGG-------RGSGGP 328 RL VE A G RG GGP Sbjct: 397 PIMFRGAVRLNVEEKKTRAAREGDRRDNRLRGPGGP 432
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 43.1 bits (100), Expect = 6e-04 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Frame = +2 Query: 65 SRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDA 235 +R T V NLP ++ E + DLF K GR++ I + KV P G+AFV FE DA Sbjct: 171 NRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDA 230 Query: 236 EDACA 250 A A Sbjct: 231 ARAIA 235
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 43.1 bits (100), Expect = 6e-04 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 7/99 (7%) Frame = +2 Query: 44 RLQRGGMSRRWS---RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP----PGY 202 R +R G + WS +T+ + NL E ++++F K I KVP P GY Sbjct: 473 RQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI-----KVPQNPHGKSKGY 527 Query: 203 AFVEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGS 319 AF+EF DA++A + +G +R+E G RGS Sbjct: 528 AFIEFASFEDAKEALNSCNKMEIEGRTIRLE-LQGPRGS 565 Score = 36.6 bits (83), Expect = 0.059 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S+T++V L D E +++ F R + + G+ FV+F DA+ A Sbjct: 573 SKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632 Query: 257 DGYNFDGNRLRV-------EPAHGGRGSG 322 + DGN++ + E GGRG G Sbjct: 633 EDGEIDGNKVTLDWAKPKGEGGFGGRGGG 661 Score = 30.0 bits (66), Expect = 5.6 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL-KVPPRPPGYAFVEFEDPRDAEDAC 247 R +RT+ NL +I E ++++F V+I L R G A++EF+ DAE Sbjct: 393 RAARTLLAKNLSFNITEDELKEVFED---AVEIRLVSQDGRSKGIAYIEFKSEADAEKNL 449 Query: 248 AGRDGYNFDG 277 + G DG Sbjct: 450 EEKQGAEIDG 459
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/70 (35%), Positives = 35/70 (50%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 I+VGNL R V +LF KYG +V+ D+ Y FV + D +DA +G Sbjct: 88 IFVGNLTDKTRAPEVRELFQKYGTVVECDI-----VRNYGFVHLDCVGDVQDAIKELNGR 142 Query: 266 NFDGNRLRVE 295 DG L+V+ Sbjct: 143 VVDGQPLKVQ 152 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/82 (28%), Positives = 37/82 (45%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 +++GNL + + LF KYG +V+ D+ Y FV E + DA +GY Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVV-----KNYGFVHMETEQQGRDAIQNLNGY 63 Query: 266 NFDGNRLRVEPAHGGRGSGGPS 331 + ++VE A R P+ Sbjct: 64 TLNEFAIKVEAAKSRRAPNTPT 85
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +YVGNL + + A+E+LF + G++V+ + + R G+ FV ++ + A Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318 Query: 257 DGYNFDGNRLRVEPA 301 +G + DG ++RV A Sbjct: 319 NGADLDGRQIRVSEA 333 Score = 38.5 bits (88), Expect = 0.016 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VGNL ++ + LF G + +++ KV R G+ FV + E A Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160 Query: 257 DGYNFDGNRLRV 292 +GY F+G LRV Sbjct: 161 NGYEFEGRPLRV 172
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 42.7 bits (99), Expect = 8e-04 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = +2 Query: 68 RRWSRTIYVGNLPG-DIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDA 244 R + +++GNL +++ VE +F KYG+IV + G+AFV+F + R A A Sbjct: 13 RSMNSRVFIGNLNTLVVKKTDVEAIFSKYGKIVGCSVH-----KGFAFVQFSNERTARTA 67 Query: 245 CAGRDGYNFDGNRLRVEPA 301 AG DG G L + A Sbjct: 68 VAGEDGRMIAGQVLDINLA 86
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 42.7 bits (99), Expect = 8e-04 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 6/191 (3%) Frame = +2 Query: 44 RLQRGGMSRRWS---RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVE 214 R +R G + WS +T+ + NL + +E++F K + + +P GYAF+E Sbjct: 471 RQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEK-ATFIKVPQNPHGKPKGYAFIE 529 Query: 215 FEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXX 394 F DA++A + +G +R+E G PS Sbjct: 530 FASFEDAKEALNSCNKMEIEGRTIRLE-LQGSNSRSQPSK-------------------- 568 Query: 395 XXXHTDYRVLVTGLPSSASWQDLKDHMR---RAGDVCFSEVYREGGGTIGIADYTNYDDM 565 + V GL + + LK+ RA V E G G D+ + +D Sbjct: 569 -------TLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKG--FGFVDFNSEEDA 619 Query: 566 KYAIKKLDDTE 598 K A + ++D E Sbjct: 620 KAAKEAMEDGE 630 Score = 37.0 bits (84), Expect = 0.045 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 7/99 (7%) Frame = +2 Query: 47 LQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDP 226 LQ + S+T++V L D E +++ F R + + G+ FV+F Sbjct: 557 LQGSNSRSQPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSE 616 Query: 227 RDAEDACAGRDGYNFDGNRLRV-------EPAHGGRGSG 322 DA+ A + DGN++ + E GGRG G Sbjct: 617 EDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG 655
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 42.7 bits (99), Expect = 8e-04 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%) Frame = +2 Query: 62 MSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---PGYAFVEFEDPRD 232 +S R + +++ NL +E LF +YG + ++ L + + G+A V+FEDP + Sbjct: 295 VSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPEN 354 Query: 233 AEDACAGRDGYNFDGNRLRVEP 298 A A +DG F G L + P Sbjct: 355 AIAAYEAQDGKIFQGRLLHILP 376 Score = 35.0 bits (79), Expect = 0.17 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP--------GYAFVEFEDPRD 232 S +++V NL R + D F + +K+ P G+ FVEF Sbjct: 604 STSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEA 663 Query: 233 AEDACAGRDGYNFDGNRLRVEPAHGGR 313 AE A DG+ DG++L+++ ++ G+ Sbjct: 664 AEIAQKAMDGHVLDGHKLQLKISNRGQ 690
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDA 244 +YV NLP I + +E +F KYG IV ++ K+ RP G AFV F +A++A Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEA 245 Score = 31.6 bits (70), Expect = 1.9 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP---GYAFVEFEDPRDAEDACAGR 256 + V LP D+ +R + LF G I + + GYAFV+F DA++A Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163 Query: 257 DGYNFDGNRLRVEPAHGG 310 +G RL+V A G Sbjct: 164 NGITVRNKRLKVSYARPG 181
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Frame = +2 Query: 53 RGGMSRRWS---RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFED 223 RGG + WS +T+ + NL E ++++F K + + + GYAF+EF Sbjct: 474 RGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK-ATFIKVPQNQNGKSKGYAFIEFAS 532 Query: 224 PRDAEDACAGRDGYNFDGNRLRVEPAHGGRGS 319 DA++A + +G +R+E G RGS Sbjct: 533 FEDAKEALNSCNKREIEGRAIRLE-LQGPRGS 563 Score = 36.2 bits (82), Expect = 0.077 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S+T++V L D E +++ F R + + G+ FV+F DA+ A Sbjct: 571 SKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630 Query: 257 DGYNFDGNRLRV-------EPAHGGRGSG 322 + DGN++ + E GGRG G Sbjct: 631 EDGEIDGNKVTLDWAKPKGEGGFGGRGGG 659 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYG--RIVDIDLKVPPRPPGYAFVEFEDPRDAEDA 244 R +RT+ NLP + + ++++F R+V D K G A++EF+ DAE Sbjct: 390 RDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGK----SKGIAYIEFKTEADAEKT 445 Query: 245 CAGRDGYNFDGNRL 286 + G DG + Sbjct: 446 FEEKQGTEIDGRSI 459
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL------KVPPRPPGYAFVEFEDPRDAED 241 +T++V + D E + F YG I I + + +P GYAF+E+E RD Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHS 162 Query: 242 ACAGRDGYNFDGNRLRVEPAHG 307 A DG DG R+ V+ G Sbjct: 163 AYKHADGKKIDGRRVLVDVERG 184
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/72 (34%), Positives = 37/72 (51%) Frame = +2 Query: 20 RPPPFNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPG 199 RP P P +Q + SR +++GNLP E+ +E+ F K+G+I I + Sbjct: 280 RPSPL-PESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL---SKKN 335 Query: 200 YAFVEFEDPRDA 235 AFV F + RDA Sbjct: 336 IAFVHFLNIRDA 347
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/79 (31%), Positives = 39/79 (49%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 I+VGN+ + + LF + GR+++ D+ YAFV E DA+ A A +G Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDV-----VKDYAFVHMEKEADAKAAIAQLNGK 135 Query: 266 NFDGNRLRVEPAHGGRGSG 322 G R+ VE + G+ G Sbjct: 136 EVKGKRINVELSTKGQKKG 154
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/79 (31%), Positives = 39/79 (49%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 I+VGN+ + + LF + GR+++ D+ YAFV E DA+ A A +G Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDV-----VKDYAFVHMEKEADAKAAIAQLNGK 135 Query: 266 NFDGNRLRVEPAHGGRGSG 322 G R+ VE + G+ G Sbjct: 136 EVKGKRINVELSTKGQKKG 154
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/79 (31%), Positives = 39/79 (49%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 I+VGN+ + + LF + GR+++ D+ YAFV E DA+ A A +G Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDV-----VKDYAFVHMEKEADAKAAIAQLNGK 135 Query: 266 NFDGNRLRVEPAHGGRGSG 322 G R+ VE + G+ G Sbjct: 136 EVKGKRINVELSTKGQKKG 154
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 42.4 bits (98), Expect = 0.001 Identities = 25/79 (31%), Positives = 39/79 (49%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 I+VGN+ + + LF + GR+++ D+ YAFV E DA+ A A +G Sbjct: 81 IFVGNVSAACTSQELRSLFERRGRVIECDV-----VKDYAFVHMEKEADAKAAIAQLNGK 135 Query: 266 NFDGNRLRVEPAHGGRGSG 322 G R+ VE + G+ G Sbjct: 136 EVKGKRINVELSTKGQKKG 154
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Frame = +2 Query: 53 RGGMSRRWS---RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFED 223 RGG + WS +T+ + NL E ++++F K + + + GYAF+EF Sbjct: 473 RGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK-ATFIKVPQNQNGKSKGYAFIEFAS 531 Query: 224 PRDAEDACAGRDGYNFDGNRLRVEPAHGGRGS 319 DA++A + +G +R+E G RGS Sbjct: 532 FEDAKEALNSCNKREIEGRAIRLE-LQGPRGS 562 Score = 36.2 bits (82), Expect = 0.077 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S+T++V L D E +++ F R + + G+ FV+F DA+ A Sbjct: 570 SKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 257 DGYNFDGNRLRV-------EPAHGGRGSG 322 + DGN++ + E GGRG G Sbjct: 630 EDGEIDGNKVTLDWAKPKGEGGFGGRGGG 658 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYG--RIVDIDLKVPPRPPGYAFVEFEDPRDAEDA 244 R +RT+ NLP + + ++++F R+V D K G A++EF+ DAE Sbjct: 389 RDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGK----SKGIAYIEFKTEADAEKT 444 Query: 245 CAGRDGYNFDGNRL 286 + G DG + Sbjct: 445 FEEKQGTEIDGRSI 458
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%) Frame = +2 Query: 53 RGGMSRRWS---RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFED 223 RGG + WS +T+ + NL E ++++F K + + + GYAF+EF Sbjct: 475 RGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK-ATFIKVPQNQNGKSKGYAFIEFAS 533 Query: 224 PRDAEDACAGRDGYNFDGNRLRVEPAHGGRGS 319 DA++A + +G +R+E G RGS Sbjct: 534 FEDAKEALNSCNKREIEGRAIRLE-LQGPRGS 564 Score = 36.2 bits (82), Expect = 0.077 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S+T++V L D E +++ F R + + G+ FV+F DA+ A Sbjct: 572 SKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631 Query: 257 DGYNFDGNRLRV-------EPAHGGRGSG 322 + DGN++ + E GGRG G Sbjct: 632 EDGEIDGNKVTLDWAKPKGEGGFGGRGGG 660 Score = 30.8 bits (68), Expect = 3.3 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYG--RIVDIDLKVPPRPPGYAFVEFEDPRDAEDA 244 R +RT+ NLP + + ++++F R+V D K G A++EF+ DAE Sbjct: 391 RDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVSKDGK----SKGIAYIEFKTEADAEKT 446 Query: 245 CAGRDGYNFDGNRL 286 + G DG + Sbjct: 447 FEEKQGTEIDGRSI 460
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAEDAC 247 S+ + V NL E ++ ++F K I ++P R G+AF+EF DA+DA Sbjct: 413 SKVLVVNNLSYSATEDSLREVFEKATSI-----RIPQNQGRAKGFAFIEFSSAEDAKDAM 467 Query: 248 AGRDGYNFDGNRLRVEPAHGGRGSGG 325 + +G +R+E + GG GG Sbjct: 468 DSCNNTEIEGRSIRLEFSQGGGPQGG 493 Score = 34.7 bits (78), Expect = 0.23 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%) Frame = +2 Query: 53 RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRD 232 RGG ++ S+T++V L D E +++ F + + G+ FV+F D Sbjct: 495 RGGSAQ--SKTLFVRGLSEDTTEETLKEAFDGSVNARIVTDRDTGASKGFGFVDFSTAED 552 Query: 233 AEDACAGRDGYNFDGNRLRVEPA-------HGGRGSGG 325 A+ A + DGN++ ++ A GGRG G Sbjct: 553 AKAAKEAMEDGEIDGNKVTLDFAKPKGDSQRGGRGGFG 590 Score = 31.6 bits (70), Expect = 1.9 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 4/182 (2%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACA 250 R SRT++V N+P ++++F + + + I G A+VEF + +A A Sbjct: 321 RDSRTLFVKNIPYSTTVEELQEIF-ENAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALE 379 Query: 251 GRDGYNFDGNRLRV----EPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYR 418 + G +G + V E + GP D Sbjct: 380 EKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKV------------------------ 415 Query: 419 VLVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIGIADYTNYDDMKYAIKKLDDTE 598 ++V L SA+ L++ +A + + G ++++ +D K A+ ++TE Sbjct: 416 LVVNNLSYSATEDSLREVFEKATSIRIPQNQGRAKG-FAFIEFSSAEDAKDAMDSCNNTE 474 Query: 599 FK 604 + Sbjct: 475 IE 476
>ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2| Length = 704 Score = 42.0 bits (97), Expect = 0.001 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 15/91 (16%) Frame = +2 Query: 20 RPPPFNPHRLQRGGM-------SRRWSRTIYVGNLPGDIRERAVEDLFYKYGR-IVDIDL 175 R P +PH +GG + R+SR ++VG LP DI E + F ++G +VD Sbjct: 420 RLSPHSPHSPIQGGNGGNVGDGTARFSRKVFVGGLPPDIDEDEITTSFRRFGPLVVDWPH 479 Query: 176 KVPPR----PPGYAFVEFEDPRDAE---DAC 247 K + P GYAF+ F+D + D+C Sbjct: 480 KAESKSYFPPKGYAFLLFQDESSVQQLIDSC 510
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 42.0 bits (97), Expect = 0.001 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Frame = +2 Query: 44 RLQRGGMSRRWS---RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVE 214 R +R G + WS +T+ + NL E ++++F K + + + GYAF+E Sbjct: 470 RQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK-ATFIKVPQNQQGKSKGYAFIE 528 Query: 215 FEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGS 319 F DA++A + +G +R+E G RGS Sbjct: 529 FASFEDAKEALNSCNKMEIEGRTIRLE-LQGPRGS 562 Score = 36.6 bits (83), Expect = 0.059 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S+T++V L D E +++ F R + + G+ FV+F DA+ A Sbjct: 570 SKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 257 DGYNFDGNRLRV-------EPAHGGRGSG 322 + DGN++ + E GGRG G Sbjct: 630 EDGEIDGNKVTLDWAKPKGEGGFGGRGGG 658
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYG---RIVDIDLKVPPRPPGYAFVEFEDPRDAEDACA 250 RT+++ + D E + F YG +IV I + +P GYAF+E+E RD A Sbjct: 102 RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYK 161 Query: 251 GRDGYNFDGNRLRVE 295 DG D R+ V+ Sbjct: 162 HADGKKIDSKRVLVD 176
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 41.6 bits (96), Expect = 0.002 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 5/183 (2%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAED 241 R + I++ NL I +A+ D F +G IV + V + GY FV++ + A+ Sbjct: 120 RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQK 179 Query: 242 ACAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRV 421 A +G + ++ V P + ++ V Sbjct: 180 AIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFT----------------------NV 217 Query: 422 LVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGT---IGIADYTNYDDMKYAIKKLDD 592 V L S + DLK+ G + + V ++G G G ++ N DD A++ L+ Sbjct: 218 YVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277 Query: 593 TEF 601 +F Sbjct: 278 HKF 280 Score = 35.0 bits (79), Expect = 0.17 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+L ++ + + D F + G +V + + V R GY +V F +P+DA A Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96 Query: 254 RDGYNFDGNRLRVEPAH 304 + G +RV +H Sbjct: 97 LNYIPLYGKPIRVMYSH 113 Score = 33.9 bits (76), Expect = 0.38 Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 2/150 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAEDACAGRD 259 +YV NL + +++ F +YG+I + + G+ FV FE+ DA A + Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276 Query: 260 GYNFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLP 439 G+ FD V G + + V L Sbjct: 277 GHKFDDKEWYV----------GRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLD 326 Query: 440 SSASWQDLKDHMRRAGDVCFSEVYREGGGT 529 S S + LK+ G V S+V R+ GT Sbjct: 327 PSISDEKLKEIFSPFGTVTSSKVMRDPNGT 356
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDA 244 SR+I+VGN+ D+ +ED F G+I I L + P GY ++EFE P E A Sbjct: 63 SRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKA 121
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 6/79 (7%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFE---DPRDAE 238 SR I V L + ++ V +LF K+G I I + + R G+ F+ FE D R A+ Sbjct: 104 SRCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAK 163 Query: 239 DACAGRDGYNFDGNRLRVE 295 DAC G + DG R+RV+ Sbjct: 164 DACTGME---VDGRRIRVD 179
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 41.6 bits (96), Expect = 0.002 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Frame = +2 Query: 59 GMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRI--VDIDLKVPPRPPGYAFVEFEDPRD 232 G ++ S I V NLP + + V +LF +G++ V + K G+AFVEF P + Sbjct: 705 GSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPSE 764 Query: 233 AEDACAGRDGYNFDGNRLRVEPA 301 AE+A G + G RL ++ A Sbjct: 765 AENAMDQLQGVHLLGRRLVMQYA 787 Score = 39.3 bits (90), Expect = 0.009 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---PGYAFVEFEDPRDAEDACAGR 256 +++ N+ D E + LF YG + ++ + V R G+A+V F+DP A +A Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 257 DGYNFDGNRLRVEPA 301 D F G L + PA Sbjct: 363 DKQIFQGRLLHILPA 377 Score = 33.1 bits (74), Expect = 0.66 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 8/82 (9%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP--------GYAFVEFEDPRDAE 238 +I+V NL + + F + V +K P P G+ F+EF A Sbjct: 613 SIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAG 672 Query: 239 DACAGRDGYNFDGNRLRVEPAH 304 A DG DG++++++ +H Sbjct: 673 AVIAAMDGAVIDGHKIQLKISH 694
>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 306 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERA-VEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDA 244 R + +++GNL + +++ VE +F KYG+IV + G+AFV++ + R+A A Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH-----KGFAFVQYVNERNARAA 66 Query: 245 CAGRDGYNFDGNRLRVEPA 301 AG DG G L + A Sbjct: 67 VAGEDGRMIAGQVLDINLA 85
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAEDAC 247 S ++V NL E +E LF YG + ++ + +P G+AFV F P A A Sbjct: 399 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 458 Query: 248 AGRDGYNFDGNRLRVEPA 301 A DG F G L V P+ Sbjct: 459 AEVDGQVFQGRMLHVLPS 476 Score = 37.0 bits (84), Expect = 0.045 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 11/179 (6%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPG------YAFVEFEDPRDAEDA 244 T+++ NL E ++ +F K G I + G + FVE++ P A+ A Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782 Query: 245 CAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXXHTDYRVL 424 G+ DG++L V T ++L Sbjct: 783 LKQLQGHTVDGHKLEVR---------------ISERATKPALTSTRKKQVPKKQTTSKIL 827 Query: 425 VTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGT-----IGIADYTNYDDMKYAIKKL 586 V +P A+ +++++ G++ + ++ GT G D+ D K A L Sbjct: 828 VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = +2 Query: 65 SRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR-PPGYAFVEFEDPRDAED 241 S+ + ++V N+P R+ + +F ++G+I+D+++ R G+ FV FE+ DA+ Sbjct: 116 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 175 Query: 242 ACAGRDGYNFDGNRLRVEPA 301 A G +G ++ V A Sbjct: 176 AREKLHGTVVEGRKIEVNNA 195
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR--PPGYAFVEFEDPRDAEDACAGRD 259 I++G LP + E V++L +G + L V + GYAF E+ DP + A AG + Sbjct: 293 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLN 352 Query: 260 GYNFDGNRLRVEPA 301 G +L V+ A Sbjct: 353 GMQLGDKQLVVQLA 366 Score = 37.4 bits (85), Expect = 0.035 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 11/83 (13%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---------PGYAFVEFEDPR 229 SR +YVGN+P E A+ D F + + + + P P +AF+EF R Sbjct: 183 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCGL-AQAPGNPILLCQINLDKNFAFIEF---R 238 Query: 230 DAEDACAGR--DGYNFDGNRLRV 292 ++ AG DG NF G +L+V Sbjct: 239 SIDETTAGMAFDGINFMGQQLKV 261
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/69 (34%), Positives = 35/69 (50%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 ++VGNLP DI E + LF KYG+ ++ + + G+ F+ E AE A D Sbjct: 78 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLETRTLAEIAKVELDNM 134 Query: 266 NFDGNRLRV 292 G +LRV Sbjct: 135 PLRGKQLRV 143
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR--PPGYAFVEFEDPRDAEDACAGRD 259 I++G LP + E V++L +G + L V + GYAF E+ DP + A AG + Sbjct: 284 IFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLN 343 Query: 260 GYNFDGNRLRVEPA 301 G +L V+ A Sbjct: 344 GMQLGDKQLVVQLA 357 Score = 38.1 bits (87), Expect = 0.020 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 11/83 (13%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---------PGYAFVEFEDPR 229 SR +YVGN+P E A+ D F + + ++ + P P +AF+EF R Sbjct: 174 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCNL-AQAPGNPILLCQINLDKNFAFIEF---R 229 Query: 230 DAEDACAGR--DGYNFDGNRLRV 292 ++ AG DG NF G +L+V Sbjct: 230 SIDETTAGMAFDGINFMGQQLKV 252
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL--KVPPRPPGYAFVEFEDPRDAEDACAG 253 RT++VGNL +RE + +LF + G + + + +P + FV F+ P A A Sbjct: 10 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 69 Query: 254 RDGYNFDGNRLRVEPAHGGRGSGGPSH 334 +G G + V+ G S P++ Sbjct: 70 LNGIRLYGRPINVQYRFGSSRSSEPAN 96
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/69 (34%), Positives = 35/69 (50%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 ++VGNLP DI E + LF KYG+ ++ + + G+ F+ E AE A D Sbjct: 81 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLETRTLAEIAKVELDNM 137 Query: 266 NFDGNRLRV 292 G +LRV Sbjct: 138 PLRGKQLRV 146
>RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"| Length = 111 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Frame = +2 Query: 83 TIYVGNLPGDIRER----AVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACA 250 T+YV NL I + A+ LF YG +VDI P+ G A V F DP A A Sbjct: 5 TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMK 64 Query: 251 GRDGYNFDGNRLRVEPAH 304 + F G ++++ AH Sbjct: 65 ALKNFIFFGKEMKIQYAH 82
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 41.2 bits (95), Expect = 0.002 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Frame = +2 Query: 65 SRRWSRTIYVGNLPGDIRERAVEDLFYKYGRI--VDIDLKVPPRPPGYAFVEFEDPRDAE 238 S + S I V NLP + + V +LF +G++ V + K G+AFVEF P++AE Sbjct: 758 SNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAE 817 Query: 239 DACAGRDGYNFDGNRLRVEPA 301 +A G + G RL ++ A Sbjct: 818 NAMDQLHGVHLLGRRLVMQYA 838 Score = 35.0 bits (79), Expect = 0.17 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 8/89 (8%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP--------GYAFVEFEDPRDAE 238 +I++ NL + + D F + V +K P P G+ FVEF A Sbjct: 664 SIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQAN 723 Query: 239 DACAGRDGYNFDGNRLRVEPAHGGRGSGG 325 A DG DG++++++ +H G Sbjct: 724 AVIAAMDGTVIDGHKIQLKLSHRQASQSG 752 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---PGYAFVEFEDPRDAEDACAGR 256 +++ N+ +E LF +G + ++ + + R G+A+V F+D ++A +A Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406 Query: 257 DGYNFDGNRLRVEP 298 D F G L + P Sbjct: 407 DKQIFQGRLLHILP 420
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 41.2 bits (95), Expect = 0.002 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDAC 247 S T+ V NL D RE + DLF ++G I + L K R G+AFV + D A A Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260 Query: 248 AGRDGYNFDGNRLRVE 295 DGY ++ LR E Sbjct: 261 DRLDGYGWNNLILRCE 276
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +2 Query: 89 YVGNLPGDIRERAVEDLFYKYGRIVD---IDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +VG L ++E+ F YG I+D I + R G+ FV F DA + Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 260 GYNFDGNRLRVEPA--HGGRGSGG 325 G DG + V A GG G GG Sbjct: 71 GKELDGRNITVNQAQSRGGGGGGG 94
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDA 244 +YV NLP I + +E +F KYG IV ++ K+ +P G AFV F +A++A Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 228 Score = 32.7 bits (73), Expect = 0.86 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP---GYAFVEFEDPRDAEDACAGR 256 + V LP D+ +R + LF G I + + GYAFV+F DA++A Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146 Query: 257 DGYNFDGNRLRVEPAHGG 310 +G RL+V A G Sbjct: 147 NGVTVRNKRLKVSYARPG 164
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/69 (34%), Positives = 35/69 (50%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 ++VGNLP DI E + LF KYG+ ++ + + G+ F+ E AE A D Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLETRTLAEIAKVELDNM 132 Query: 266 NFDGNRLRV 292 G +LRV Sbjct: 133 PLRGKQLRV 141
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/69 (34%), Positives = 35/69 (50%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 ++VGNLP DI E + LF KYG+ ++ + + G+ F+ E AE A D Sbjct: 76 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---KDKGFGFIRLETRTLAEIAKVELDNM 132 Query: 266 NFDGNRLRV 292 G +LRV Sbjct: 133 PLRGKQLRV 141
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = +2 Query: 65 SRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR-PPGYAFVEFEDPRDAED 241 S+ + ++V N+P R+ + +F ++G+I+D+++ R G+ FV FE+ DA+ Sbjct: 111 SKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 170 Query: 242 ACAGRDGYNFDGNRLRVEPA 301 A G +G ++ V A Sbjct: 171 AREKLHGTVVEGRKIEVNNA 190
>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 313 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERA-VEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDA 244 R + +++GNL + +++ VE +F KYG+IV + G+AFV++ + R+A A Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH-----KGFAFVQYVNERNARAA 66 Query: 245 CAGRDGYNFDGNRLRVEPA 301 AG DG G L + A Sbjct: 67 VAGEDGRMIAGQVLDINLA 85
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDAC 247 S I+VG LP ++ E + +F +YG IV+I+L K + G+ F+ +ED R A Sbjct: 35 SAWIFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAV 94 Query: 248 AGRDGYNFDGNRLRVE 295 +G G +RV+ Sbjct: 95 DNFNGIKIKGRTIRVD 110
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP-RPPGYAFVEFEDPRDAEDACAGRDG 262 I+V NLP D + ++D F + G ++ D+K+ + G V+FE P AE AC +G Sbjct: 614 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 673 Query: 263 YNFDGNRLRV 292 G + V Sbjct: 674 MKLSGREIDV 683 Score = 33.1 bits (74), Expect = 0.66 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = +2 Query: 413 YRVLVTGLPSSASWQDLKDHMR-RAGDVCFSEVYREGGGT---IGIADYTNYDDMKYAIK 580 YR +T +P WQ LKD ++ + G+V + E+ + G + ++ + MK A + Sbjct: 69 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 128 Query: 581 KLD 589 L+ Sbjct: 129 VLN 131 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +2 Query: 416 RVLVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIG 535 ++ V LP +W+ LKD G V ++++ E G + G Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKG 652
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP--PGYAFVEFEDPRDAEDACAGRD 259 +Y+ NL D+ E + + F ++G+IV + + GYAFV F++P DA A + Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262 Query: 260 GYNFDGNRLRV 292 G F L V Sbjct: 263 GTKFGSKCLYV 273 Score = 35.0 bits (79), Expect = 0.17 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKV--PPRPPGYAFVEFEDPRDAEDA 244 ++V NLP + ++D+F K+G IV + + GY FV+FE A A Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAA 168
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 40.8 bits (94), Expect = 0.003 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 21/90 (23%) Frame = +2 Query: 119 ERAVEDLFYKYGRIVDIDLKVPPRPP---GYAFVEFEDPRDAEDACAGRDGYNFDGNRLR 289 ER + ++F +YG + +++ R G+AFV FE D+++A +G DG R+R Sbjct: 130 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR 189 Query: 290 VE------------------PAHGGRGSGG 325 V+ P H G G GG Sbjct: 190 VDYSITKRAHTPTPGIYMGRPTHSGGGGGG 219
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 40.8 bits (94), Expect = 0.003 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 +IYVGNL D+ E + +F +YG + + L + R G+ FVE E + A Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 254 RDGYNFDGNRLRVEPA--HGGRGSGG 325 DG + G L+V A R GG Sbjct: 62 LDGAEWMGRDLKVNKAKPRENRSGGG 87
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP-RPPGYAFVEFEDPRDAEDACAGRDG 262 I+V NLP D + ++D F + G ++ D+K+ + G V+FE P AE AC +G Sbjct: 653 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 712 Query: 263 YNFDGNRLRV 292 G + V Sbjct: 713 MKLSGREIDV 722 Score = 33.1 bits (74), Expect = 0.66 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = +2 Query: 413 YRVLVTGLPSSASWQDLKDHMR-RAGDVCFSEVYREGGGT---IGIADYTNYDDMKYAIK 580 YR +T +P WQ LKD ++ + G+V + E+ + G + ++ + MK A + Sbjct: 69 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 128 Query: 581 KLD 589 L+ Sbjct: 129 VLN 131 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +2 Query: 416 RVLVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIG 535 ++ V LP +W+ LKD G V ++++ E G + G Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKG 691
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 40.8 bits (94), Expect = 0.003 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 21/90 (23%) Frame = +2 Query: 119 ERAVEDLFYKYGRIVDIDLKVPPRPP---GYAFVEFEDPRDAEDACAGRDGYNFDGNRLR 289 ER + ++F +YG + +++ R G+AFV FE D+++A +G DG R+R Sbjct: 132 ERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIR 191 Query: 290 VE------------------PAHGGRGSGG 325 V+ P H G G GG Sbjct: 192 VDYSITKRAHTPTPGIYMGRPTHSGGGGGG 221
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 40.8 bits (94), Expect = 0.003 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRI--VDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 I V NLP + + V +LF +G++ V + K G+AFVEF P++AE+A Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLQ 813 Query: 260 GYNFDGNRLRVE 295 G + G RL +E Sbjct: 814 GVHLLGRRLVME 825 Score = 31.6 bits (70), Expect = 1.9 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP--------GYAFVEFEDPRDAE 238 +I++ NL + + + F + V +K P P G+ F EF+ A Sbjct: 652 SIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQAN 711 Query: 239 DACAGRDGYNFDGNRLRVEPAH 304 + +G DG++L+++ +H Sbjct: 712 AVISAMEGTILDGHKLQLKLSH 733 Score = 30.0 bits (66), Expect = 5.6 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---PGYAFVEFEDPRDAEDACAGR 256 +++ N+ E LF YG + ++ + V R G+A+V F++ +A A Sbjct: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391 Query: 257 DGYNFDGNRLRVEPA 301 D F G L + PA Sbjct: 392 DKQIFQGRLLHILPA 406
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR-PPGYAFVEFEDPRDAEDACAGR 256 + ++V N+P R+ ++ +F K+G + D+++ R G+ FV E P+DAE A Sbjct: 153 KRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQEL 212 Query: 257 DGYNFDGNRLRVEPA 301 G +G ++ V A Sbjct: 213 HGSMIEGRKIEVNCA 227
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP-RPPGYAFVEFEDPRDAEDACAGRDG 262 I+V NLP D + ++D F + G ++ D+K+ + G V+FE P AE AC +G Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 713 Query: 263 YNFDGNRLRV 292 G + V Sbjct: 714 MKLSGREIDV 723 Score = 33.1 bits (74), Expect = 0.66 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Frame = +2 Query: 413 YRVLVTGLPSSASWQDLKDHMR-RAGDVCFSEVYREGGGT---IGIADYTNYDDMKYAIK 580 YR +T +P WQ LKD ++ + G+V + E+ + G + ++ + MK A + Sbjct: 70 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 129 Query: 581 KLD 589 L+ Sbjct: 130 VLN 132 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +2 Query: 416 RVLVTGLPSSASWQDLKDHMRRAGDVCFSEVYREGGGTIG 535 ++ V LP +W+ LKD G V ++++ E G + G Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKG 692
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/69 (36%), Positives = 36/69 (52%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 ++VGNLP DI E + LF KYG ++ + + G+ F++ E AE A A D Sbjct: 291 LFVGNLPADITEDEFKRLFAKYGEPGEVFIN---KGKGFGFIKLESRALAEIAKAELDDT 347 Query: 266 NFDGNRLRV 292 G +LRV Sbjct: 348 PMRGRQLRV 356
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/69 (36%), Positives = 36/69 (52%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 ++VGNLP DI E + LF KYG ++ + + G+ F++ E AE A A D Sbjct: 299 LFVGNLPADITEDEFKRLFAKYGEPGEVFIN---KGKGFGFIKLESRALAEIAKAELDDT 355 Query: 266 NFDGNRLRV 292 G +LRV Sbjct: 356 PMRGRQLRV 364
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVP---PRPPGYAFVEFEDPRDAEDACA 250 R +YVG L ++ ++ + F +G I DI + + + G+AFVEFE DA A Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 251 GRDGYNFDGNRLRVEPAHGGRGSGGPS 331 + G +RV A R G S Sbjct: 66 NMNESELFGRTIRVNLAKPMRIKEGSS 92
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVP---PRPPGYAFVEFEDPRDAEDACA 250 R +YVG L ++ ++ + F +G I DI + + + G+AFVEFE DA A Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 251 GRDGYNFDGNRLRVEPAHGGRGSGGPS 331 + G +RV A R G S Sbjct: 66 NMNESELFGRTIRVNLAKPMRIKEGSS 92
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 40.4 bits (93), Expect = 0.004 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = +2 Query: 89 YVGNLPGDIRERAVEDLFYKYGRIVD---IDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +VG L +E F +G+++D I + R G+ FV F + DA + Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 260 GYNFDGNRLRVEPA--HGGRGSGG 325 G DG + V A GG G GG Sbjct: 71 GKELDGRNITVNQAQSRGGGGGGG 94
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR-PPGYAFVEFEDPRDAEDACAGR 256 + ++V N+P R+ + +F ++G+I+D+++ R G+ FV FE+ DA+ A Sbjct: 117 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 176 Query: 257 DGYNFDGNRLRVEPA 301 G +G ++ V A Sbjct: 177 HGTVVEGRKIEVNNA 191
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 40.4 bits (93), Expect = 0.004 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 16/90 (17%) Frame = +2 Query: 2 EANPSLRP--PPFNPHRLQRGGMSRRWS-----------RTIYVGNLPGDIRERAVEDLF 142 E P RP PP P R RG M + S ++VGNLP DI E +++ F Sbjct: 293 EQRPRERPGFPPRGP-RPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFF 351 Query: 143 YKYGRIVDIDLK---VPPRPPGYAFVEFED 223 +G +V++ + V + P + FV F+D Sbjct: 352 MSFGNVVELRINTKGVGGKLPNFGFVVFDD 381
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 40.4 bits (93), Expect = 0.004 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 16/90 (17%) Frame = +2 Query: 2 EANPSLRP--PPFNPHRLQRGGMSRRWS-----------RTIYVGNLPGDIRERAVEDLF 142 E P RP PP P R RG M + S ++VGNLP DI E +++ F Sbjct: 293 EQRPRERPGFPPRGP-RPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFF 351 Query: 143 YKYGRIVDIDLK---VPPRPPGYAFVEFED 223 +G +V++ + V + P + FV F+D Sbjct: 352 MSFGNVVELRINTKGVGGKLPNFGFVVFDD 381
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +YV NLP I + ++ +F KYG IV ++ K+ RP G AFV + +A++A + Sbjct: 215 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 274 Query: 257 DGYNFDGN----RLRVEPAHG 307 + +G +R+ HG Sbjct: 275 NNVIPEGGSQPLSVRLAQEHG 295 Score = 30.4 bits (67), Expect = 4.2 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP---GYAFVEFEDPRDAE 238 R + + V LP D+ +R + LF G I + + GYAFV+F D++ Sbjct: 123 RSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQ 182 Query: 239 DACAGRDGYNFDGNRLRVEPAHGG 310 A +G RL+V A G Sbjct: 183 RAIKVLNGITVRNKRLKVSYARPG 206
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +YV NLP I + ++ +F KYG IV ++ K+ RP G AFV + +A++A + Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272 Query: 257 DGYNFDGN----RLRVEPAHG 307 + +G +R+ HG Sbjct: 273 NNVIPEGGSQPLSVRLAEEHG 293 Score = 30.4 bits (67), Expect = 4.2 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP---GYAFVEFEDPRDAE 238 R + + V LP D+ +R + LF G I + + GYAFV+F D++ Sbjct: 121 RASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQ 180 Query: 239 DACAGRDGYNFDGNRLRVEPAHGG 310 A +G RL+V A G Sbjct: 181 RAIKVLNGITVRNKRLKVSYARPG 204
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGR 256 S ++VGN+ + + F +YG +V+ D+ YAFV E DA +A +G Sbjct: 77 STKLHVGNISSSCTNQELRAKFEEYGPVVECDIV-----KDYAFVHMERVEDAMEAISGL 131 Query: 257 DGYNFDG---------NRLRVEPAHGGR 313 D F G +RLR P G R Sbjct: 132 DNTAFQGKLMSVKLSTSRLRTAPGMGER 159 Score = 37.0 bits (84), Expect = 0.045 Identities = 20/74 (27%), Positives = 35/74 (47%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDGY 265 I+VGNL + + LF +YG+I + D+ + FV + +A++A Y Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDI-----VKNFGFVHMDSKSEADEAIQNLHHY 58 Query: 266 NFDGNRLRVEPAHG 307 +G + VE + G Sbjct: 59 MLNGMAMNVEMSKG 72
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAEDACAGR 256 +YVG+L +I E + +F +GRI I L + R GY F+ F D A+ A Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 257 DGYNFDGNRLRV 292 +G+ G ++V Sbjct: 312 NGFELAGRPMKV 323
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 40.0 bits (92), Expect = 0.005 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAEDACAGR 256 +YVG+L +I E + +F +GRI I L + R GY F+ F D A+ A Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 257 DGYNFDGNRLRV 292 +G+ G ++V Sbjct: 312 NGFELAGRPMKV 323
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPG--YAFVEFEDPRDAED 241 +R +R +++GNL + E + F KYG I ++ +K P R G YAF++F++ A Sbjct: 6 QRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHR 65 Query: 242 ACAGRDGYNFDGNRLRVEPAHGGRGSGGPS 331 A G N +++ G G P+ Sbjct: 66 AKVAMSGRVIGRNPIKI-----GYGKANPT 90
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%) Frame = +2 Query: 89 YVGNLPGDIRERAVEDLFYKYGRIVD---IDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 +VG L + ++ F ++G ++D I+ + R G+ FV F+D + DA + Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68 Query: 260 GYNFDGNRLRVEPAHGGRGSGG 325 G DG + V A RGSGG Sbjct: 69 GKELDGRVITVNEAQ-SRGSGG 89
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 40.0 bits (92), Expect = 0.005 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPG--YAFVEFEDPRDAED 241 +R +R +++GNL + E + F KYG I ++ +K P R G YAF++F++ A Sbjct: 6 QRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHR 65 Query: 242 ACAGRDGYNFDGNRLRVEPAHGGRGSGGPS 331 A G N +++ G G P+ Sbjct: 66 AKVAMSGRVIGRNPIKI-----GYGKANPT 90
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 40.0 bits (92), Expect = 0.005 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+L D+ E + + F G ++ I + + R GYA+V F+ P DAE A Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 69 Query: 254 RDGYNFD 274 D NFD Sbjct: 70 -DTMNFD 75 Score = 34.7 bits (78), Expect = 0.23 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAEDACAGRD 259 +Y+ N ++ + ++++LF ++G+ + + + P + G+ FV +E DA A + Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252 Query: 260 GYNFDG 277 G G Sbjct: 253 GKEISG 258 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR-PPGYAFVEFEDPRDAEDACAGRDG 262 +++ NL I +A+ D F +G I+ + GYAFV FE A+ A +G Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR---PPGYAFVEFEDPRDAEDACAGR 256 +Y+ LP + ++ VED+F ++GRI++ + V G AF+ F+ +AE+A Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167 Query: 257 DGYNFDGN 280 +G+ G+ Sbjct: 168 NGHKPPGS 175 Score = 33.1 bits (74), Expect = 0.66 Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 3/155 (1%) Frame = +2 Query: 53 RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFED 223 RG + R + V LP ++ + + LF G + L KV GY FV + Sbjct: 14 RGDIGRT---NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70 Query: 224 PRDAEDACAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXX 403 +DAE A +G ++V A PS + Sbjct: 71 AKDAERAINTLNGLRLQSKTIKVSYAR-------PSSEVI-------------------- 103 Query: 404 HTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEV 508 D + ++GLP + + +D++D R G + S V Sbjct: 104 -KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 39.7 bits (91), Expect = 0.007 Identities = 19/57 (33%), Positives = 31/57 (54%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDAC 247 SR ++VG D+ ++ F +YG +VD+ + P R +AFV F D + A+ C Sbjct: 190 SRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFR--AFAFVTFADDKVAQSLC 244
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 39.7 bits (91), Expect = 0.007 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+L D+ E + + F G I+ I + + R GYA+V F+ P DAE A Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 69 Query: 254 RDGYNFD 274 D NFD Sbjct: 70 -DTMNFD 75 Score = 35.8 bits (81), Expect = 0.10 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAEDACAGRD 259 +Y+ N D+ + +++LF K+G + + + + G+ FV FE DA+ A + Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 260 GYNFDGNRLRV 292 G +G ++ V Sbjct: 253 GKELNGKQIYV 263
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 39.7 bits (91), Expect = 0.007 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+L D+ E + + F G I+ I + + R GYA+V F+ P DAE A Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 69 Query: 254 RDGYNFD 274 D NFD Sbjct: 70 -DTMNFD 75 Score = 35.8 bits (81), Expect = 0.10 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAEDACAGRD 259 +Y+ N D+ + +++LF K+G + + + + G+ FV FE DA+ A + Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 260 GYNFDGNRLRV 292 G +G ++ V Sbjct: 253 GKELNGKQIYV 263
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 39.7 bits (91), Expect = 0.007 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+L D+ E + + F G I+ I + + R GYA+V F+ P DAE A Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 69 Query: 254 RDGYNFD 274 D NFD Sbjct: 70 -DTMNFD 75 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAEDACAGRD 259 +Y+ N D+ + ++DLF K+G + + + + G+ FV FE DA+ A + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 260 GYNFDGNRLRV 292 G +G ++ V Sbjct: 253 GKELNGKQIYV 263
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 39.7 bits (91), Expect = 0.007 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+L D+ E + + F G I+ I + + R GYA+V F+ P DAE A Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 69 Query: 254 RDGYNFD 274 D NFD Sbjct: 70 -DTMNFD 75 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAEDACAGRD 259 +Y+ N D+ + ++DLF K+G + + + + G+ FV FE DA+ A + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 260 GYNFDGNRLRV 292 G +G ++ V Sbjct: 253 GKELNGKQIYV 263
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 39.7 bits (91), Expect = 0.007 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 11/98 (11%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDAC 247 S T+YVGNL E + +LF K G I I + K+ G+ FVE+ DAE+A Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98 Query: 248 AGRDGYNFDGNRLRVEPAHG-------GRG-SGGPSHD 337 +G D +R + G GRG SGG D Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRD 136
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 39.7 bits (91), Expect = 0.007 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 11/98 (11%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDAC 247 S T+YVGNL E + +LF K G I I + K+ G+ FVE+ DAE+A Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98 Query: 248 AGRDGYNFDGNRLRVEPAHG-------GRG-SGGPSHD 337 +G D +R + G GRG SGG D Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRD 136
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 39.7 bits (91), Expect = 0.007 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 11/98 (11%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDAC 247 S T+YVGNL E + +LF K G I I + K+ G+ FVE+ DAE+A Sbjct: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98 Query: 248 AGRDGYNFDGNRLRVEPAHG-------GRG-SGGPSHD 337 +G D +R + G GRG SGG D Sbjct: 99 RYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRD 136
>RNP1_YEAST (P32385) Ribonucleoprotein 1| Length = 249 Score = 39.7 bits (91), Expect = 0.007 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFY-KYGRI-VDIDLKVPPRPP--GYAFVEFEDPRDAEDAC 247 RT+YVGNLP + R++ + DLF YG+I +++ K P + P +AF+EF++ + + Sbjct: 35 RTLYVGNLPKNCRKQDLRDLFEPNYGKITINMLKKKPLKKPLKRFAFIEFQEGVNLKKVK 94 Query: 248 AGRDGYNFDGNRLRVE 295 +G F ++ +E Sbjct: 95 EKMNGKIFMNEKIVIE 110
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 39.7 bits (91), Expect = 0.007 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+L D+ E + + F G I+ I + + R GYA+V F+ P DAE A Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 69 Query: 254 RDGYNFD 274 D NFD Sbjct: 70 -DTMNFD 75
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 39.7 bits (91), Expect = 0.007 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+L D+ E + + F G I+ I + + R GYA+V F+ P DAE A Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL-- 69 Query: 254 RDGYNFD 274 D NFD Sbjct: 70 -DTMNFD 75 Score = 37.0 bits (84), Expect = 0.045 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAEDACAGRD 259 +Y+ N D+ + ++++F KYG + + + + G+ FV FE DA+ A + Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 260 GYNFDGNRLRV 292 G + +G + V Sbjct: 253 GKDMNGKSMFV 263
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 39.7 bits (91), Expect = 0.007 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDA 244 +YV NLP I + ++ +F KYG IV ++ K+ +P G AFV F +A++A Sbjct: 198 LYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 253 Score = 30.4 bits (67), Expect = 4.2 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP---GYAFVEFEDPRDAEDACAGR 256 + V LP D+ +R + LF G I + + GYAFV+F D++ A Sbjct: 112 LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSL 171 Query: 257 DGYNFDGNRLRVEPAHGG 310 +G RL+V A G Sbjct: 172 NGITVRNKRLKVSYARPG 189
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/70 (34%), Positives = 38/70 (54%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDG 262 T++VG L + E ++ LF +G IV + K+PP G FV+F + + AE A G Sbjct: 304 TVFVGGLSKFVSEEELKYLFQNFGEIVYV--KIPPGK-GCGFVQFVNRQSAEIAINQLQG 360 Query: 263 YNFDGNRLRV 292 Y +R+R+ Sbjct: 361 YPLGNSRIRL 370 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDA 244 T+++G L + E ++ ++ G+ V + L + GY FVEF P +A A Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 39.3 bits (90), Expect = 0.009 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%) Frame = +2 Query: 62 MSRRWSRTIYVGNLPGDIRE----RAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPR 229 M R + TIY+ N+ I++ R++ LF ++G +VDI + G AFV F++ Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60 Query: 230 DAEDACAGRDGYNFDGNRLRVEPA 301 + +A G+ F G +R++ A Sbjct: 61 SSTNALRQLQGFPFYGKPMRIQYA 84
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 39.3 bits (90), Expect = 0.009 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%) Frame = +2 Query: 62 MSRRWSRTIYVGNLPGDIRE----RAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPR 229 M R + TIY+ N+ I++ R++ LF ++G +VDI + G AFV F++ Sbjct: 1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELG 60 Query: 230 DAEDACAGRDGYNFDGNRLRVEPA 301 + +A G+ F G +R++ A Sbjct: 61 SSTNALRQLQGFPFYGKPMRIQYA 84
>RALY_HUMAN (Q9UKM9) RNA-binding protein Raly (hnRNP associated with lethal| yellow homolog) (Autoantigen p542) Length = 306 Score = 39.3 bits (90), Expect = 0.009 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +2 Query: 86 IYVGNL-PGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDG 262 +++GNL +++ VE +F KYGR+ + GYAFV++ + R A A G +G Sbjct: 23 VFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----KGYAFVQYSNERHARAAVLGENG 77 Query: 263 YNFDGNRLRVEPA 301 G L + A Sbjct: 78 RVLAGQTLDINMA 90
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 39.3 bits (90), Expect = 0.009 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 29/114 (25%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFED-------- 223 S I+VG +P + E + + F K+G + ++ + RP G+ F+ FED Sbjct: 112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Query: 224 ------------------PRDAEDACAGRDGYNFDGNRLRVEPAHGGRGSGGPS 331 PRD+++ G+ G + G+R+ A+G G P+ Sbjct: 172 NMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPT 225 Score = 35.4 bits (80), Expect = 0.13 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG L + + F +YG +VD + K + G+ FV+F+DP A R Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71 Query: 257 ----DGYNFD 274 DG N D Sbjct: 72 PHTLDGRNID 81
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 39.3 bits (90), Expect = 0.009 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 8/84 (9%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP--------GYAFVEFEDPRDAE 238 TIYV NL ++ + +F + ++ P P G+ FVEF+D A Sbjct: 620 TIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAV 679 Query: 239 DACAGRDGYNFDGNRLRVEPAHGG 310 A +G+ DG++L ++ +H G Sbjct: 680 AAMHAMNGFVLDGHKLEIKLSHQG 703 Score = 38.5 bits (88), Expect = 0.016 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR---PPGYAFVEFEDPRDAEDAC 247 ++ +++ NL E ++ LF +G++ + + + + P G+A+++F D DA A Sbjct: 322 TKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAY 381 Query: 248 AGRDGYNFDGNRLRVEPA 301 D F G L V PA Sbjct: 382 LELDAKPFQGRLLHVLPA 399 Score = 31.2 bits (69), Expect = 2.5 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYG--RIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRD 259 I + NLP + ++ V+ L YG R V + K G+AF EF R+A +A Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALK 782 Query: 260 GYNFDGNRLRVEPA 301 + G L ++ A Sbjct: 783 NTHLLGRHLVLQYA 796
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 39.3 bits (90), Expect = 0.009 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAEDACAGR 256 +YVG++ +++E + F +G I I++ P + G+AFVE+E P A+ A Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 257 DGYNFDGNRLRVEPAHGGRGSGGP 328 +G G ++V GR S P Sbjct: 192 NGALMGGRNIKV-----GRPSNMP 210 Score = 32.7 bits (73), Expect = 0.86 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR---PPGYAFVEFEDPRDAEDACAGR 256 IYV ++ D+ E ++ +F +G I+ L GY F+E+ + + ++A A Sbjct: 229 IYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASM 288 Query: 257 DGYNFDGNRLRV 292 + ++ G LRV Sbjct: 289 NLFDLGGQLLRV 300
>RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated with lethal| yellow protein) (Maternally expressed hnRNP C-related protein) Length = 312 Score = 39.3 bits (90), Expect = 0.009 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +2 Query: 86 IYVGNL-PGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDG 262 +++GNL +++ VE +F KYGR+ + GYAFV++ + R A A G +G Sbjct: 23 VFIGNLNTAVVKKSDVETIFSKYGRVAGCSVH-----KGYAFVQYANERHARAAVLGENG 77 Query: 263 YNFDGNRLRVEPA 301 G L + A Sbjct: 78 RVLAGQTLDINMA 90
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 39.3 bits (90), Expect = 0.009 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +YVGNLP + + ++F + G + ++++ +V R G+AFV +A++A Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175 Query: 257 DGYNFDGNRLRVEPAHGGRG 316 DG G ++V RG Sbjct: 176 DGSQVGGRTVKVNFPEVPRG 195
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 38.9 bits (89), Expect = 0.012 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVP-PRPPGYAFVEFEDPRDAEDACAGR 256 RT+YVGNL D+ E + LF + G + Y FVEF + RDA A A Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68 Query: 257 DGYNFDGNRLRV 292 +G G ++V Sbjct: 69 NGRKILGKEVKV 80 Score = 35.0 bits (79), Expect = 0.17 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG+L +I ++ F +G+I D + + GY FV F + DAE+A Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158 Query: 257 DGYNFDGNRLR 289 G G ++R Sbjct: 159 GGQWLGGRQIR 169
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 38.9 bits (89), Expect = 0.012 Identities = 19/57 (33%), Positives = 32/57 (56%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDAC 247 SR ++VG D+ E + + F +YG ++D+ + P R +AFV F D + A+ C Sbjct: 190 SRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFR--AFAFVTFADDQIAQSLC 244
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 38.9 bits (89), Expect = 0.012 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAE 238 ++VG L D ++ ++D F K+G +VD +K+ P R G+ F+ F+D E Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 38.9 bits (89), Expect = 0.012 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Frame = +2 Query: 56 GGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---------PGYAF 208 G R +R +YVGN+P I E A+ D F R+ + + P P +AF Sbjct: 141 GSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGL-TQAPGNPVLAVQINQDKNFAF 199 Query: 209 VEFEDPRDAEDACAGRDGYNFDGNRLRVEPAH 304 +EF + A A DG F G L++ H Sbjct: 200 LEFRSVDETTQAMA-FDGIIFQGQSLKIRRPH 230
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 38.9 bits (89), Expect = 0.012 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Frame = +2 Query: 56 GGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---------PGYAF 208 G R +R +YVGN+P I E A+ D F R+ + + P P +AF Sbjct: 141 GSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGL-TQAPGNPVLAVQINQDKNFAF 199 Query: 209 VEFEDPRDAEDACAGRDGYNFDGNRLRVEPAH 304 +EF + A A DG F G L++ H Sbjct: 200 LEFRSVDETTQAMA-FDGIIFQGQSLKIRRPH 230
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 38.9 bits (89), Expect = 0.012 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAE 238 ++VG L D ++ ++D F K+G +VD +K+ P R G+ F+ F+D E Sbjct: 70 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 123
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 38.5 bits (88), Expect = 0.016 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 IY+GNL ++ E + +F +YG VD+ L + G+A++++ED R A Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 257 DGYNFDGNRLRVE 295 +G+ G L+++ Sbjct: 93 NGFKIGGRALKID 105
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 38.5 bits (88), Expect = 0.016 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAEDACA 250 R ++VG L + E+ + D F KYG I I++K P R G+AF+ F + +A D + Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTN-TEAIDKVS 114 Query: 251 GRDGYNFDGNRLRVEPAHGGRG 316 D + + ++ + A G Sbjct: 115 AADEHIINSKKVDPKKAKARHG 136
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 38.5 bits (88), Expect = 0.016 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%) Frame = +2 Query: 53 RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFED 223 R G + +YV NL I + +E +F KYG+IV ++ K P G AF+ F Sbjct: 155 RPGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNK 214 Query: 224 PRDAEDACAGRDGYNFDGN----RLRVEPAHG 307 +A++A + + +G +RV HG Sbjct: 215 REEAQEAISALNNVIPEGGTQPLTVRVAEEHG 246
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 38.5 bits (88), Expect = 0.016 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR---PPGYAFVEFEDPRDAEDACAGR 256 +Y+ LP + ++ VED+F ++GRI++ + V G AF+ F+ +AE+A Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167 Query: 257 DGYNFDGN 280 G+ G+ Sbjct: 168 IGHKPPGS 175 Score = 35.0 bits (79), Expect = 0.17 Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 3/155 (1%) Frame = +2 Query: 53 RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFED 223 RG + R + V LP ++ + + LF G + L KV GY FV + Sbjct: 14 RGDIGRT---NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVT 70 Query: 224 PRDAEDACAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXXXXXXXXXXXXXXXXXXXXXX 403 +DAE A + +G ++V A PS + Sbjct: 71 AKDAERAISTLNGLRLQSKTIKVSYAR-------PSSEVI-------------------- 103 Query: 404 HTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEV 508 D + ++GLP + + +D++D R G + S V Sbjct: 104 -KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 38.1 bits (87), Expect = 0.020 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 62 MSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR-PPGYAFVEFEDPRDAE 238 M +T+YVGNL D+ E + LF + G + + + Y FVEF + R A Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60 Query: 239 DACAGRDGYNFDGNRLRV 292 A A +G G ++V Sbjct: 61 AALAAMNGRKIMGKEVKV 78 Score = 34.3 bits (77), Expect = 0.29 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG+L +I ++ F +GRI D + + GY FV F + DAE+A Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 257 DGYNFDGNRLR 289 G G ++R Sbjct: 168 GGQWLGGRQIR 178
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 38.1 bits (87), Expect = 0.020 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Frame = +2 Query: 62 MSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPR-PPGYAFVEFEDPRDAE 238 M +T+YVGNL D+ E + LF + G + + + Y FVEF + R A Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60 Query: 239 DACAGRDGYNFDGNRLRV 292 A A +G G ++V Sbjct: 61 AALAAMNGRKIMGKEVKV 78 Score = 33.5 bits (75), Expect = 0.50 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG+L I ++ F +GRI D + + GY FV F + DAE+A Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 257 DGYNFDGNRLR 289 G G ++R Sbjct: 168 GGQWLGGRQIR 178
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 38.1 bits (87), Expect = 0.020 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 3/97 (3%) Frame = +2 Query: 38 PHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAF 208 P +Q G + + V LP ++ + LF G I L K+ + GY F Sbjct: 25 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 84 Query: 209 VEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGS 319 V + DP+DAE A +G ++V A S Sbjct: 85 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121 Score = 37.7 bits (86), Expect = 0.027 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +YV LP + ++ +E LF +YGRI+ + +V G F+ F+ +AE+A G Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186 Query: 257 DGYNFDG 277 +G G Sbjct: 187 NGQKPSG 193
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 38.1 bits (87), Expect = 0.020 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 3/97 (3%) Frame = +2 Query: 38 PHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAF 208 P +Q G + + V LP ++ + LF G I L K+ + GY F Sbjct: 32 PSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 91 Query: 209 VEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGS 319 V + DP+DAE A +G ++V A S Sbjct: 92 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128 Score = 37.7 bits (86), Expect = 0.027 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +YV LP + ++ +E LF +YGRI+ + +V G F+ F+ +AE+A G Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193 Query: 257 DGYNFDG 277 +G G Sbjct: 194 NGQKPSG 200
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 38.1 bits (87), Expect = 0.020 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAE 238 R TIY+GNL + + + +L + G +V+I + +V G+ F EF +D E Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66 Query: 239 DACAGRDGYNFDGNRLRVEPAHGGRG 316 AC + G +RV A RG Sbjct: 67 YACQILNQVKLFGKPIRVNRASQDRG 92
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 38.1 bits (87), Expect = 0.020 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 12/96 (12%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 + I+VG + D E + D F KYG+I I++ + + G+AFV F+D D D Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIV 184 Query: 251 GRDGYNFDGNRLRV---------EPAHGGRGSGGPS 331 + + +G+ V + A RG GG S Sbjct: 185 VQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGS 220 Score = 30.0 bits (66), Expect = 5.6 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 11/195 (5%) Frame = +2 Query: 11 PSLRPPPFNPHRLQRGG------MSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDID 172 P RP P + R +R G R +++G L + + ++ + F K+G + D Sbjct: 6 PPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV 65 Query: 173 LKVPP---RPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXX 343 + P R G+ FV + + + A R + DG + + A S P Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSREDSVKPG---- 120 Query: 344 XXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVY--RE 517 T ++ V G+ +L+D+ + G + EV R+ Sbjct: 121 ------------------AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162 Query: 518 GGGTIGIADYTNYDD 562 G G A + +DD Sbjct: 163 SGKKRGFA-FVTFDD 176
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 38.1 bits (87), Expect = 0.020 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 12/96 (12%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 + I+VG + D E + D F KYG+I I++ + + G+AFV F+D D D Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIV 184 Query: 251 GRDGYNFDGNRLRV---------EPAHGGRGSGGPS 331 + + +G+ V + A RG GG S Sbjct: 185 VQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGS 220 Score = 30.0 bits (66), Expect = 5.6 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 11/195 (5%) Frame = +2 Query: 11 PSLRPPPFNPHRLQRGG------MSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDID 172 P RP P + R +R G R +++G L + + ++ + F K+G + D Sbjct: 6 PPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV 65 Query: 173 LKVPP---RPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXX 343 + P R G+ FV + + + A R + DG + + A S P Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSREDSVKPG---- 120 Query: 344 XXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVY--RE 517 T ++ V G+ +L+D+ + G + EV R+ Sbjct: 121 ------------------AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162 Query: 518 GGGTIGIADYTNYDD 562 G G A + +DD Sbjct: 163 SGKKRGFA-FVTFDD 176
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 38.1 bits (87), Expect = 0.020 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 3/97 (3%) Frame = +2 Query: 38 PHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAF 208 P +Q G + + V LP ++ + LF G I L K+ + GY F Sbjct: 37 PSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 96 Query: 209 VEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGS 319 V + DP+DAE A +G ++V A S Sbjct: 97 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 133 Score = 37.7 bits (86), Expect = 0.027 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +YV LP + ++ +E LF +YGRI+ + +V G F+ F+ +AE+A G Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198 Query: 257 DGYNFDG 277 +G G Sbjct: 199 NGQKPSG 205
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 38.1 bits (87), Expect = 0.020 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 29/114 (25%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFED-------- 223 S I+VG +P + E + + F K+G + ++ + RP G+ F+ FED Sbjct: 112 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171 Query: 224 ------------------PRDAEDACAGRDGYNFDGNRLRVEPAHGGRGSGGPS 331 PRD++ G+ G + G+R+ A+G G P+ Sbjct: 172 NMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPT 225 Score = 35.4 bits (80), Expect = 0.13 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 ++VG L + + F +YG +VD + K + G+ FV+F+DP A R Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71 Query: 257 ----DGYNFD 274 DG N D Sbjct: 72 PHTLDGRNID 81
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 38.1 bits (87), Expect = 0.020 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +2 Query: 62 MSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---PGYAFVEFEDPRD 232 MS ++VGN+P D+ E+ + ++F + G + L + P GY F EF D Sbjct: 1 MSMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET 60 Query: 233 AEDACAGRDGYNFDGNRLRVE 295 A + ++RVE Sbjct: 61 TAMAVRKLNNSELGPRKIRVE 81
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 38.1 bits (87), Expect = 0.020 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 12/96 (12%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 + I+VG + D E + D F KYG+I I++ + + G+AFV F+D D D Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIV 184 Query: 251 GRDGYNFDGNRLRV---------EPAHGGRGSGGPS 331 + + +G+ V + A RG GG S Sbjct: 185 VQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGS 220 Score = 30.0 bits (66), Expect = 5.6 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 11/195 (5%) Frame = +2 Query: 11 PSLRPPPFNPHRLQRGG------MSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDID 172 P RP P + R +R G R +++G L + + ++ + F K+G + D Sbjct: 6 PPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV 65 Query: 173 LKVPP---RPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLRVEPAHGGRGSGGPSHDXX 343 + P R G+ FV + + + A R + DG + + A S P Sbjct: 66 VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARP-HKVDGRVVEPKRAVSREDSVKPG---- 120 Query: 344 XXXXXXXXXXXXXXXXXXXXHTDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSEVY--RE 517 T ++ V G+ +L+D+ + G + EV R+ Sbjct: 121 ------------------AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQ 162 Query: 518 GGGTIGIADYTNYDD 562 G G A + +DD Sbjct: 163 SGKKRGFA-FVTFDD 176
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 37.7 bits (86), Expect = 0.027 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDAC 247 ++ +YV + D E + + F KYG + ++ K +P G+ FV F+D D+ D C Sbjct: 113 TKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD-HDSVDQC 171 Query: 248 AGRDGYNFDGNRLRV 292 + + +G+R V Sbjct: 172 VLQKSHMVNGHRCDV 186
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 37.7 bits (86), Expect = 0.027 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRPP--------GYAFVEFEDPRDAED 241 ++V NL +A+ DLF V +K P P G+ FVEF A Sbjct: 619 VFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQANV 678 Query: 242 ACAGRDGYNFDGNRLRVEPAH-GGRGSGGPS 331 A + DG+ DG++L+++ +H G G+ S Sbjct: 679 AISTLDGHVLDGHKLQLKLSHKQGTGTSASS 709 Score = 37.4 bits (85), Expect = 0.035 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Frame = +2 Query: 77 SRTIYVGNLPGDIRERAVEDLFYKYGRI--VDIDLKVPPRPPGYAFVEFEDPRDAEDACA 250 S I + NLP + + + +LF +G++ V + K G+AFVEF ++AE A + Sbjct: 716 SSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFNLMKEAETAMS 775 Query: 251 GRDGYNFDGNRLRVEPA 301 +G + G RL ++ A Sbjct: 776 QLEGVHLLGRRLVMQYA 792 Score = 34.3 bits (77), Expect = 0.29 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---PGYAFVEFEDPRDAEDACAGR 256 +++ N+ + E LF +YG + ++ + + R G+ +V+F DA A Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371 Query: 257 DGYNFDGNRLRVEPA 301 D F G L + PA Sbjct: 372 DKQIFQGRLLHILPA 386
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 37.7 bits (86), Expect = 0.027 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Frame = +2 Query: 68 RRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAE 238 R T+YVG L + E + +LF + G +V+ + +V + GY FVEF DA+ Sbjct: 9 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 68 Query: 239 DACAGRDGYNFDGNRLRVEPA 301 A + G +RV A Sbjct: 69 YAIKIMNMIKLYGKPIRVNKA 89
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 37.7 bits (86), Expect = 0.027 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 12/95 (12%) Frame = +2 Query: 80 RTIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACA 250 + ++VG L D E + + F +G+IV +++ K + G+AF+EF+D D D Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDD-YDPVDKII 173 Query: 251 GRDGYNFDGNRLRVEPA---------HGGRGSGGP 328 + ++ L V+ A GG G GGP Sbjct: 174 LQKTHSIKNKTLDVKKAIAKQDMDRQGGGGGRGGP 208
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 37.7 bits (86), Expect = 0.027 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Frame = +2 Query: 2 EANPSLRPPPFNPHRLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKV 181 E N P P GG R +YVGNL I E ++ F G I +I + + Sbjct: 49 EDNQGENDPSVVPANAITGGRETS-DRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI 107 Query: 182 PP--RPPGYAFVEFEDPRDAEDACAGRDGYNFDGNRLRV 292 + YAFVE+ DA A +G + N +++ Sbjct: 108 DKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 146 Score = 31.2 bits (69), Expect = 2.5 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 3/92 (3%) Frame = +2 Query: 23 PPPFNPHRLQ---RGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP 193 PP NP + R R T Y+GN+P E + LF +G I +D K P Sbjct: 320 PPQVNPQAVDHIIRSAPPR--VTTAYIGNIPHFATEADLIPLFQNFGFI--LDFKHYPE- 374 Query: 194 PGYAFVEFEDPRDAEDACAGRDGYNFDGNRLR 289 G F++++ A + F G LR Sbjct: 375 KGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 406
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 37.7 bits (86), Expect = 0.027 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Frame = +2 Query: 71 RWSRTIYVGNLPGDIRER----AVEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAE 238 R S I+V +L + + +V + F KYG + + + YAFV++ + DA+ Sbjct: 90 RPSSCIFVASLAAALSDDELCLSVTENFKKYGDLARVKVLRDNANRPYAFVQYNNDHDAK 149 Query: 239 DACAGRDGYNFDGNRLRVEPAHGGR 313 A G +G RLR EPA R Sbjct: 150 HALIRAQGTLLNGRRLRCEPAKVNR 174
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.7 bits (86), Expect = 0.027 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Frame = +2 Query: 44 RLQRGGMSRRWSRTIYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVE 214 R ++R +++G L D ++ ++D F K+G +VD LK+ P R G+ FV Sbjct: 85 RHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 144 Query: 215 FEDPRDAE 238 F++ + Sbjct: 145 FKESESVD 152
>HNRCL_HUMAN (O60812) Heterogeneous nuclear ribonucleoprotein C-like 1 (hnRNP| core protein C-like 1) Length = 293 Score = 37.4 bits (85), Expect = 0.035 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Frame = +2 Query: 86 IYVGNLPGDIRERA-VEDLFYKYGRIVDIDLKVPPRPPGYAFVEFEDPRDAEDACAGRDG 262 +++GNL + +++ VE +F KYG+I + G+AFV+++ ++A A AG DG Sbjct: 18 VFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVH-----KGFAFVQYDKEKNARAAVAGEDG 72
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 37.4 bits (85), Expect = 0.035 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---PGYAFVEFEDPRDAEDACAGR 256 ++V + + E + D F +YG I +I L + R GY VE+E ++A+ A G Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134 Query: 257 DGYNFDGNRLRVE------PAHGGRGSG 322 +G + G + V+ P G R G Sbjct: 135 NGQDLMGQPISVDWCFVRGPPKGKRRGG 162
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 37.4 bits (85), Expect = 0.035 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPPRP---PGYAFVEFEDPRDAEDACAGR 256 ++V + + E + D F +YG I +I L + R GY VE+E ++A+ A G Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134 Query: 257 DGYNFDGNRLRVE------PAHGGRGSG 322 +G + G + V+ P G R G Sbjct: 135 NGQDLMGQPISVDWCFVRGPPKGKRRGG 162
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.4 bits (85), Expect = 0.035 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP---RPPGYAFVEFEDPRDAE 238 +++G L D ++ ++D F K+G +VD LK+ P R G+ FV F++ + Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 37.4 bits (85), Expect = 0.035 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDLKVPP--RPPGYAFVEFEDPRDAEDACAGRD 259 +Y+ N D+ + ++DLF K+G + + + + G+ FV FE DA+ A + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query: 260 GYNFDGNRLRV 292 G +G ++ V Sbjct: 253 GKELNGKQIYV 263 Score = 33.9 bits (76), Expect = 0.38 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = +2 Query: 83 TIYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAG 253 ++YVG+L D+ E + + F G I+ I + + YA+V F+ +DAE A Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHAL-- 69 Query: 254 RDGYNFD 274 D NFD Sbjct: 70 -DTMNFD 75
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 37.4 bits (85), Expect = 0.035 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 +YV LP + ++ +E LF +YGRI+ + +V G F+ F+ +AE+A G Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186 Query: 257 DG 262 +G Sbjct: 187 NG 188 Score = 36.2 bits (82), Expect = 0.077 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = +2 Query: 86 IYVGNLPGDIRERAVEDLFYKYGRIVDIDL---KVPPRPPGYAFVEFEDPRDAEDACAGR 256 + V LP ++ + ++ LF G I L K+ + GY FV + DP+DAE A Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100 Query: 257 DGYNFDGNRLRVEPAHGGRGS 319 +G ++V A S Sbjct: 101 NGLRLQTKTIKVSYARPSSAS 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,114,410 Number of Sequences: 219361 Number of extensions: 1764861 Number of successful extensions: 7681 Number of sequences better than 10.0: 432 Number of HSP's better than 10.0 without gapping: 6747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7450 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
