ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags26g02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473128.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 684 Score = 198 bits (100), Expect = 1e-47 Identities = 220/260 (84%) Strand = Plus / Plus Query: 1 cctgcgattcatggactcggcggacggctacctcctcctgatggattcgctctcctccgc 60 |||||| ||||||||||| | |||||||||||||||||| |||||||| || ||||||| Sbjct: 126 cctgcggttcatggactctgtggacggctacctcctcctcatggattcactgtcctccgt 185 Query: 61 tcttcgccagggttggcttgatttggcaagtgcgcgtcactcgatgggcgcatcacgtgt 120 ||| |||| ||| ||||||||| |||||||||| |||||||||||||| |||||||||| Sbjct: 186 tctccgcccggggtggcttgatctggcaagtgcccgtcactcgatgggtacatcacgtgt 245 Query: 121 ttcaagtacactgtttgatcataaagagcaatctgcagccactacgctgcaagtagttta 180 ||| |||||||| || ||||| ||||||||||||||||| | | ||||||||| ||| | Sbjct: 246 ttcgagtacactcttcgatcacaaagagcaatctgcagctagcaagctgcaagtggttga 305 Query: 181 tcctgcagacttgccaccatcagaatcaaacccgcatttttctctatcaaagtggtgttt 240 | ||||||||| || ||||||| ||||||| |||||| || ||||||||||| || Sbjct: 306 ttctgcagactcgcagtcatcagagccaaacccacattttatcctgtcaaagtggtgctt 365 Query: 241 gaaagaagaatcaaactcca 260 | ||||| |||| ||||||| Sbjct: 366 gcaagaaaaatccaactcca 385 Score = 73.8 bits (37), Expect = 4e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 294 caaaactaaggtacagaggatcagctgctaccccagatagtagcaatgaatcagatgcaa 353 ||||| |||||||| |||| ||||| || || |||||| | ||| |||| |||||||||| Sbjct: 419 caaaattaaggtaccgagggtcagcagcaacgccagatggcagccatgattcagatgcaa 478 Query: 354 ctacggcaaagtcttctactggtgttgacgctaacagtcaggttcaaaaggcgagatcaa 413 || ||||| ||||| ||||| |||| ||| ||| || || ||||| ||||| ||||||| Sbjct: 479 ctccggcagagtctgctactagtgtggacactagtagccatgttcagaaggcaagatcaa 538 Query: 414 aagca 418 ||||| Sbjct: 539 aagca 543
>dbj|AK069997.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038G06, full insert sequence Length = 1141 Score = 198 bits (100), Expect = 1e-47 Identities = 220/260 (84%) Strand = Plus / Plus Query: 1 cctgcgattcatggactcggcggacggctacctcctcctgatggattcgctctcctccgc 60 |||||| ||||||||||| | |||||||||||||||||| |||||||| || ||||||| Sbjct: 244 cctgcggttcatggactctgtggacggctacctcctcctcatggattcactgtcctccgt 303 Query: 61 tcttcgccagggttggcttgatttggcaagtgcgcgtcactcgatgggcgcatcacgtgt 120 ||| |||| ||| ||||||||| |||||||||| |||||||||||||| |||||||||| Sbjct: 304 tctccgcccggggtggcttgatctggcaagtgcccgtcactcgatgggtacatcacgtgt 363 Query: 121 ttcaagtacactgtttgatcataaagagcaatctgcagccactacgctgcaagtagttta 180 ||| |||||||| || ||||| ||||||||||||||||| | | ||||||||| ||| | Sbjct: 364 ttcgagtacactcttcgatcacaaagagcaatctgcagctagcaagctgcaagtggttga 423 Query: 181 tcctgcagacttgccaccatcagaatcaaacccgcatttttctctatcaaagtggtgttt 240 | ||||||||| || ||||||| ||||||| |||||| || ||||||||||| || Sbjct: 424 ttctgcagactcgcagtcatcagagccaaacccacattttatcctgtcaaagtggtgctt 483 Query: 241 gaaagaagaatcaaactcca 260 | ||||| |||| ||||||| Sbjct: 484 gcaagaaaaatccaactcca 503 Score = 73.8 bits (37), Expect = 4e-10 Identities = 103/125 (82%) Strand = Plus / Plus Query: 294 caaaactaaggtacagaggatcagctgctaccccagatagtagcaatgaatcagatgcaa 353 ||||| |||||||| |||| ||||| || || |||||| | ||| |||| |||||||||| Sbjct: 537 caaaattaaggtaccgagggtcagcagcaacgccagatggcagccatgattcagatgcaa 596 Query: 354 ctacggcaaagtcttctactggtgttgacgctaacagtcaggttcaaaaggcgagatcaa 413 || ||||| ||||| ||||| |||| ||| ||| || || ||||| ||||| ||||||| Sbjct: 597 ctccggcagagtctgctactagtgtggacactagtagccatgttcagaaggcaagatcaa 656 Query: 414 aagca 418 ||||| Sbjct: 657 aagca 661
>gb|AY108451.1| Zea mays PCO137050 mRNA sequence Length = 1070 Score = 165 bits (83), Expect = 2e-37 Identities = 209/251 (83%) Strand = Plus / Plus Query: 1 cctgcgattcatggactcggcggacggctacctcctcctgatggattcgctctcctccgc 60 |||||||||||||||||||| |||| ||||||| ||||| ||||| || || |||||||| Sbjct: 348 cctgcgattcatggactcggtggacagctacctgctcctcatggactccctatcctccgc 407 Query: 61 tcttcgccagggttggcttgatttggcaagtgcgcgtcactcgatgggcgcatcacgtgt 120 |||||| ||||| |||||||| |||||||||| || || || |||||| ||||||| || Sbjct: 408 tcttcgtcagggctggcttgacctggcaagtgctcgccattctatgggcacatcacgcgt 467 Query: 121 ttcaagtacactgtttgatcataaagagcaatctgcagccactacgctgcaagtagttta 180 ||| ||||||||||||||||| || ||||| ||||| ||||||| ||| ||||| ||| | Sbjct: 468 ttcgagtacactgtttgatcacaaggagcagtctgctgccactaagcttcaagttgttga 527 Query: 181 tcctgcagacttgccaccatcagaatcaaacccgcatttttctctatcaaagtggtgttt 240 || || | | || | ||||||| |||| || || ||| ||||||||||||||| ||| Sbjct: 528 tcatgatggcctgaaatcatcagagtcaataccacactttgctctatcaaagtggtcttt 587 Query: 241 gaaagaagaat 251 | ||||||||| Sbjct: 588 gcaagaagaat 598 Score = 46.1 bits (23), Expect = 0.097 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Plus Query: 395 gttcaaaaggcgagatcaaaagcatttatcagtctttgg 433 ||||||| ||||||||||||||| |||||||||||||| Sbjct: 742 gttcaaagagcgagatcaaaagca-ttatcagtctttgg 779
>emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065L13, complete sequence Length = 103039 Score = 117 bits (59), Expect = 3e-23 Identities = 107/123 (86%) Strand = Plus / Minus Query: 69 agggttggcttgatttggcaagtgcgcgtcactcgatgggcgcatcacgtgtttcaagta 128 |||| ||||||||| |||||||||| |||||||||||||| ||||||||||||| |||| Sbjct: 21281 aggggtggcttgatctggcaagtgcccgtcactcgatgggtacatcacgtgtttcgagta 21222 Query: 129 cactgtttgatcataaagagcaatctgcagccactacgctgcaagtagtttatcctgcag 188 |||| || ||||| ||||||||||||||||| | | ||||||||| ||| || |||||| Sbjct: 21221 cactcttcgatcacaaagagcaatctgcagctagcaagctgcaagtggttgattctgcag 21162 Query: 189 act 191 ||| Sbjct: 21161 act 21159 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 1 cctgcgattcatggactcggcggacggctacctcctcctgatggattcgctctcctccgc 60 |||||| ||||||||||| | |||||||||||||||||| |||||||| || ||||||| Sbjct: 22193 cctgcggttcatggactctgtggacggctacctcctcctcatggattcactgtcctccgt 22134 Query: 61 tcttcgcc 68 ||| |||| Sbjct: 22133 tctccgcc 22126 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 339 atgaatcagatgcaactacggcaaagtcttctactggtgt 378 |||| |||||||||||| ||||| ||||| ||||| |||| Sbjct: 20769 atgattcagatgcaactccggcagagtctgctactagtgt 20730
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 117 bits (59), Expect = 3e-23 Identities = 107/123 (86%) Strand = Plus / Minus Query: 69 agggttggcttgatttggcaagtgcgcgtcactcgatgggcgcatcacgtgtttcaagta 128 |||| ||||||||| |||||||||| |||||||||||||| ||||||||||||| |||| Sbjct: 25443788 aggggtggcttgatctggcaagtgcccgtcactcgatgggtacatcacgtgtttcgagta 25443729 Query: 129 cactgtttgatcataaagagcaatctgcagccactacgctgcaagtagtttatcctgcag 188 |||| || ||||| ||||||||||||||||| | | ||||||||| ||| || |||||| Sbjct: 25443728 cactcttcgatcacaaagagcaatctgcagctagcaagctgcaagtggttgattctgcag 25443669 Query: 189 act 191 ||| Sbjct: 25443668 act 25443666 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 1 cctgcgattcatggactcggcggacggctacctcctcctgatggattcgctctcctccgc 60 |||||| ||||||||||| | |||||||||||||||||| |||||||| || ||||||| Sbjct: 25444700 cctgcggttcatggactctgtggacggctacctcctcctcatggattcactgtcctccgt 25444641 Query: 61 tcttcgcc 68 ||| |||| Sbjct: 25444640 tctccgcc 25444633 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 339 atgaatcagatgcaactacggcaaagtcttctactggtgt 378 |||| |||||||||||| ||||| ||||| ||||| |||| Sbjct: 25443276 atgattcagatgcaactccggcagagtctgctactagtgt 25443237
>gb|AC101744.13| Mus musculus chromosome 14, clone RP23-306E19, complete sequence Length = 193615 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 418 atttatcagtctttggagcat 438 ||||||||||||||||||||| Sbjct: 53139 atttatcagtctttggagcat 53119
>ref|XM_754272.1| Ustilago maydis 521 hypothetical protein (UM03218.1) partial mRNA Length = 870 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cttctactggtgttgacgct 385 |||||||||||||||||||| Sbjct: 376 cttctactggtgttgacgct 395
>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence Length = 211411 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 agtctttggagcattggtgt 444 |||||||||||||||||||| Sbjct: 141059 agtctttggagcattggtgt 141078
>emb|AL158011.13| Human DNA sequence from clone GS1-215N23 on chromosome 1q24.1-31.1 Contains the 3' end of the C1orf19 gene for chromosome 1 open reading frame 19, complete sequence Length = 169048 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 cagaggatcagctgctaccccaga 330 ||||||||||||| |||||||||| Sbjct: 37518 cagaggatcagctactaccccaga 37495
>dbj|AB232919.1| Oryzias latipes hox gene cluster, complete cds, contains hoxAb Length = 240727 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 atcaaaagcatttatcagtc 428 |||||||||||||||||||| Sbjct: 144099 atcaaaagcatttatcagtc 144118
>gb|AC157364.6| Mus musculus chromosome 3, clone RP23-324P1, complete sequence Length = 198706 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 aagaatcaaactccagtgat 265 |||||||||||||||||||| Sbjct: 107280 aagaatcaaactccagtgat 107299
>gb|AC009481.4|AC009481 Homo sapiens BAC clone RP11-303D3 from 1, complete sequence Length = 191896 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 cagaggatcagctgctaccccaga 330 ||||||||||||| |||||||||| Sbjct: 187630 cagaggatcagctactaccccaga 187653
>gb|AC096561.1| Homo sapiens BAC clone RP11-257D7 from 2, complete sequence Length = 170304 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gtgtttgaaagaagaatcaa 254 |||||||||||||||||||| Sbjct: 146707 gtgtttgaaagaagaatcaa 146688
>gb|AC102854.12| Mus musculus chromosome 3, clone RP24-493E20, complete sequence Length = 133271 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 aagaatcaaactccagtgat 265 |||||||||||||||||||| Sbjct: 8664 aagaatcaaactccagtgat 8645 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,446,473 Number of Sequences: 3902068 Number of extensions: 3446473 Number of successful extensions: 66709 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66641 Number of HSP's gapped (non-prelim): 67 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
