ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags26f05 |
|---|---|
| Clone Library Name | barley_pub |
>RL73_ARATH (Q9LHP1) 60S ribosomal protein L7-3| Length = 244 Score = 81.6 bits (200), Expect = 5e-16 Identities = 35/53 (66%), Positives = 48/53 (90%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 + RA+QY+ EY+ +++EL+QLKREA++KGGFYV PEAKLLF++RIRGINA+ P Sbjct: 47 FNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDP 99
>RL72_ARATH (P60039) 60S ribosomal protein L7-2| Length = 242 Score = 81.6 bits (200), Expect = 5e-16 Identities = 36/53 (67%), Positives = 46/53 (86%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 + RA+QYA EY +D EL++LKREA++KGGFYV PEAKLLF++RIRGINA+ P Sbjct: 45 FKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDP 97
>RL71_ARATH (P60040) 60S ribosomal protein L7-1| Length = 242 Score = 80.5 bits (197), Expect = 1e-15 Identities = 35/53 (66%), Positives = 46/53 (86%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 + RA+QY+ EY ++KEL+ LKREA++KGGFYV PEAKLLF++RIRGINA+ P Sbjct: 45 FKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDP 97
>RL7_CAEEL (O01802) 60S ribosomal protein L7| Length = 244 Score = 62.8 bits (151), Expect = 3e-10 Identities = 30/53 (56%), Positives = 37/53 (69%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 + RA++Y EY KE ++LKREA KG FYV E K+ FVVRIRGIN +HP Sbjct: 47 FKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHP 99
>RL7_YARLI (Q6C603) 60S ribosomal protein L7| Length = 250 Score = 59.7 bits (143), Expect = 2e-09 Identities = 25/53 (47%), Positives = 40/53 (75%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 ++RA++Y EY ++E ++L+REA++ G FYV E KL+FV+RI+GI+ M P Sbjct: 51 FSRAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAP 103
>RL7_DICDI (P11874) 60S ribosomal protein L7| Length = 245 Score = 57.8 bits (138), Expect = 8e-09 Identities = 25/53 (47%), Positives = 36/53 (67%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 + RA++Y EY ++E ++L R A+ G FYV P AK+ FV+RIRGIN + P Sbjct: 48 FKRAEKYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSP 100
>RL7B_SCHPO (P25457) 60S ribosomal protein L7-B| Length = 250 Score = 57.4 bits (137), Expect = 1e-08 Identities = 26/51 (50%), Positives = 37/51 (72%) Frame = +3 Query: 9 RAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 RA+ Y EY A ++E ++L R+AR +G ++V E KL+FVVRIRGIN + P Sbjct: 54 RAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPP 104
>RL7C_SCHPO (O60143) 60S ribosomal protein L7-C| Length = 251 Score = 56.6 bits (135), Expect = 2e-08 Identities = 25/51 (49%), Positives = 36/51 (70%) Frame = +3 Query: 9 RAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 RA+ Y EY ++E ++L R+AR +G +YV E KL+FV+RIRGIN + P Sbjct: 55 RAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPP 105
>RL7_NEUCR (Q7SBD5) 60S ribosomal protein L7| Length = 248 Score = 53.5 bits (127), Expect = 2e-07 Identities = 22/53 (41%), Positives = 37/53 (69%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 + RA+ Y EY ++E ++L+R A+ G F++ EAKL+F++RI+GIN + P Sbjct: 50 FKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPP 102
>RL7_ASHGO (Q755A7) 60S ribosomal protein L7| Length = 243 Score = 53.1 bits (126), Expect = 2e-07 Identities = 23/51 (45%), Positives = 34/51 (66%) Frame = +3 Query: 9 RAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 R Y EYE ++ ++Q KREA+ G +YV + KL+FV+RI+GIN + P Sbjct: 46 RNAAYHKEYETAERAVIQAKREAKANGSYYVESQPKLVFVIRIKGINKIAP 96
>RL7B_YEAST (Q12213) 60S ribosomal protein L7-B (L6B) (YL8B)| Length = 243 Score = 52.8 bits (125), Expect = 3e-07 Identities = 23/51 (45%), Positives = 34/51 (66%) Frame = +3 Query: 9 RAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 R Y EYE ++ ++Q KR+A+ G +YV + KL+FVVRI+GIN + P Sbjct: 46 RNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPP 96
>RL7A_YEAST (P05737) 60S ribosomal protein L7-A (L6A) (YL8A) (RP11)| Length = 243 Score = 52.8 bits (125), Expect = 3e-07 Identities = 23/51 (45%), Positives = 34/51 (66%) Frame = +3 Query: 9 RAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 R Y EYE ++ ++Q KR+A+ G +YV + KL+FVVRI+GIN + P Sbjct: 46 RNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPP 96
>RL7_DROME (P32100) 60S ribosomal protein L7| Length = 252 Score = 52.0 bits (123), Expect = 4e-07 Identities = 25/51 (49%), Positives = 35/51 (68%) Frame = +3 Query: 9 RAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 RA++Y EY ++ ++L+R A+ + FYV EAKL FVVRIRGIN + P Sbjct: 56 RAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAP 106
>RL7_CANGA (Q6FSN6) 60S ribosomal protein L7| Length = 244 Score = 51.6 bits (122), Expect = 6e-07 Identities = 22/44 (50%), Positives = 32/44 (72%) Frame = +3 Query: 30 EYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 EYEA ++ ++ KREA+ G +YV + KL+FVVRI+GIN + P Sbjct: 54 EYEAAERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPP 97
>RL7_HUMAN (P18124) 60S ribosomal protein L7| Length = 248 Score = 50.8 bits (120), Expect = 1e-06 Identities = 24/53 (45%), Positives = 32/53 (60%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 Y +A+ Y EY + +++ R AR G FYV E KL FV+RIRGIN + P Sbjct: 51 YEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSP 103
>RL7_BOVIN (Q58DT1) 60S ribosomal protein L7| Length = 248 Score = 50.8 bits (120), Expect = 1e-06 Identities = 24/53 (45%), Positives = 32/53 (60%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 Y +A+ Y EY + +++ R AR G FYV E KL FV+RIRGIN + P Sbjct: 51 YEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSP 103
>RL7_RAT (P05426) 60S ribosomal protein L7| Length = 260 Score = 50.8 bits (120), Expect = 1e-06 Identities = 24/53 (45%), Positives = 32/53 (60%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 Y +A+ Y EY + +++ R AR G FYV E KL FV+RIRGIN + P Sbjct: 63 YEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSP 115
>RL7_MOUSE (P14148) 60S ribosomal protein L7| Length = 270 Score = 50.8 bits (120), Expect = 1e-06 Identities = 24/53 (45%), Positives = 32/53 (60%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 Y +A+ Y EY + +++ R AR G FYV E KL FV+RIRGIN + P Sbjct: 73 YEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSP 125
>RL7_DEBHA (Q6BTA4) 60S ribosomal protein L7| Length = 241 Score = 50.4 bits (119), Expect = 1e-06 Identities = 22/53 (41%), Positives = 35/53 (66%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 + RA Y EY ++ +++ KR+A+ G +YV + KL+FVVRI+GIN + P Sbjct: 43 FDRAAAYQKEYTDAERAVIKAKRDAKAAGSYYVDAQPKLVFVVRIKGINKIAP 95
>RL7A_SCHPO (P17937) 60S ribosomal protein L7-A| Length = 249 Score = 49.3 bits (116), Expect = 3e-06 Identities = 21/53 (39%), Positives = 33/53 (62%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHP 161 + RA+ + Y +++E ++L R A+ KG +V E KLLFV+RI G+ M P Sbjct: 51 FKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPP 103
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 29.6 bits (65), Expect = 2.4 Identities = 15/35 (42%), Positives = 15/35 (42%) Frame = -1 Query: 138 GXGQQTAALPQD*HRTHPSSGPHA*VAPALCPGPH 34 G G AA P H HP S PH P P PH Sbjct: 153 GAGAGAAAPPPPLHHLHPQSHPHPHPHPHSHPHPH 187
>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) Length = 559 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -1 Query: 90 HPSSGPHA*VAPALCPGPHTP 28 HP SG H AP+ PGPH P Sbjct: 450 HPPSGLHP--APSTAPGPHAP 468
>SYV_METKA (Q8TVG5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 914 Score = 28.1 bits (61), Expect = 6.9 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +3 Query: 27 GEYEAQDKELVQLKREARMKGGFYVSPEAKLLFVVRIRGIN 149 GE D+E V ++ E R+KGG + E + VV IRG++ Sbjct: 873 GEKVVLDEECVDVEWELRVKGGEGKAVEIRPGVVVEIRGLS 913
>AMPM_RICPR (Q9ZCD3) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 259 Score = 28.1 bits (61), Expect = 6.9 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 21 YAGEYEAQDKELVQLKREARMKGGFYVSPEAKL 119 Y G+ + K L+Q+ +A MKG V P AKL Sbjct: 112 YVGDVAIKPKRLIQVTYDAMMKGIEVVRPGAKL 144
>VEXE_SALTI (P43112) Vi polysaccharide export protein vexE| Length = 656 Score = 28.1 bits (61), Expect = 6.9 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +3 Query: 3 YARAQQYAGEYEAQDKELVQLKRE 74 YARA + G+Y A E VQL RE Sbjct: 324 YARALRQVGQYTAASDEFVQLARE 347 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,688,311 Number of Sequences: 219361 Number of extensions: 306514 Number of successful extensions: 1033 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1033 length of database: 80,573,946 effective HSP length: 29 effective length of database: 74,212,477 effective search space used: 1781099448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
