Clone Information

BLAST Search Result

Clone Name	bags25p18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_478636.1\| Oryza sativa (japonica cultivar-group), mRNA	456	e-125
2	dbj\|AK100024.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	456	e-125
3	dbj\|AK058282.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	456	e-125
4	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	256	7e-65
5	dbj\|AP004235.4\| Oryza sativa (japonica cultivar-group) genomic D...	256	7e-65
6	dbj\|AP003960.2\| Oryza sativa (japonica cultivar-group) genomic D...	256	7e-65
7	gb\|AY106172.1\| Zea mays PCO060652 mRNA sequence	246	7e-62
8	gb\|AY020474.1\| Oryza sativa microsatellite MRG2799 containing (G...	58	3e-05
9	gb\|AC159293.2\| Mus musculus BAC clone RP23-282K7 from chromosome...	44	0.52
10	ref\|NM_197788.1\| Oryza sativa (japonica cultivar-group) hypothet...	42	2.1
11	gb\|AC087599.14\| Oryza sativa chromosome 10 BAC OSJNBa0057L21 gen...	42	2.1
12	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
13	dbj\|AK122019.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
14	dbj\|AK109505.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
15	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.1
16	gb\|AY307231.1\| Corydoras sodalis voucher LBP434 NADH dehydrogena...	40	8.1
17	ref\|XM_366861.1\| Magnaporthe grisea 70-15 chromosome VII hypothe...	40	8.1
18	gb\|AE009373.1\| Agrobacterium tumefaciens str. C58 linear chromos...	40	8.1
19	gb\|AE009247.1\| Agrobacterium tumefaciens str. C58 linear chromos...	40	8.1
20	gb\|AE008366.1\| Agrobacterium tumefaciens str. C58 linear chromos...	40	8.1
21	gb\|AE008240.1\| Agrobacterium tumefaciens str. C58 linear chromos...	40	8.1
22	ref\|XM_966242.1\| PREDICTED: Tribolium castaneum similar to Tramt...	40	8.1
23	emb\|AL670399.4\| Mouse DNA sequence from clone RP23-263M10 on chr...	40	8.1
24	emb\|AL928651.13\| Mouse DNA sequence from clone RP23-167A19 on ch...	40	8.1
25	emb\|AL832425.1\|HSM803733 Homo sapiens mRNA; cDNA DKFZp762P042 (f...	40	8.1
26	ref\|NM_001039963.1\| Pan troglodytes cytospin A (LOC458713), mRNA	40	8.1
27	gb\|AC154127.2\| Ornithorhynchus anatinus BAC clone OABb-20A1 from...	40	8.1
28	ref\|NM_015330.1\| Homo sapiens KIAA0376 protein (KIAA0376), mRNA	40	8.1
29	dbj\|AK097129.1\| Homo sapiens cDNA FLJ39810 fis, clone SPLEN2009555	40	8.1
30	gb\|AC090964.10\| Papio anubis clone rp41-177g23, complete sequence	40	8.1
31	gb\|BC005093.1\|BC005093 Homo sapiens, clone IMAGE:3843328, mRNA	40	8.1
32	gb\|AY884294.1\| Pan troglodytes cytospin A mRNA, complete cds	40	8.1
33	gb\|AY884293.1\| Homo sapiens cytospin A mRNA, complete cds	40	8.1
34	gb\|AC007179.3\| Homo sapiens BAC clone RP11-569H17 from 2, comple...	40	8.1
35	emb\|CT476832.2\| Pig DNA sequence from clone XX-BE284E13 on chrom...	40	8.1
36	gb\|AC154585.2\| Mus musculus BAC clone RP23-359K10 from 12, compl...	40	8.1
37	dbj\|AB209022.1\| Homo sapiens mRNA for KIAA0376 protein variant p...	40	8.1
38	gb\|AC165249.2\| Mus musculus BAC clone RP24-157P13 from chromosom...	40	8.1
39	dbj\|AP000354.1\| Homo sapiens genomic DNA, chromosome 22q11.2, cl...	40	8.1

>ref|XM_478636.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2195

 Score =  456 bits (230), Expect = e-125
 Identities = 501/590 (84%), Gaps = 6/590 (1%)
 Strand = Plus / Plus

                                                                        
Query: 7    ctatgttgaagagaagcaggtccttccggtccctgtgatagcgagtgtcatgcaggttga 66
            ||||||||||||||||||||| | || ||| || ||| | |||| |    ||||||||||
Sbjct: 946  ctatgttgaagagaagcaggtgcatcaggttccagtggtcgcgaatactgtgcaggttga 1005

                                                                        
Query: 67   ggttgttcatgaagtgcgccagaatgtgatcgtagctaaaatgggagtggcaggggcaga 126
             ||| ||||||| |||| |||||||||  | | | |||||   ||||| |||||||||||
Sbjct: 1006 cgttattcatgatgtgcaccagaatgttgtagcacctaaagcaggagtagcaggggcaga 1065

                                                                        
Query: 127  tgctgaaagcagggcaaccgtggagcgaccacggctgaatctgaaacctcgctctaatac 186
            ||||||  || |||||   ||||||||||||||  ||||||||||||| ||||| ||| |
Sbjct: 1066 tgctgagggccgggca---gtggagcgaccacgattgaatctgaaaccccgctccaatgc 1122

                                                                        
Query: 187  agtgggtcagtctggtgaaagtgctgcgaaggagaggccatccctctttggtggtgctcg 246
            ||| || ||||||| |||||||||| | ||||| |||| ||||||||||||||| |||||
Sbjct: 1123 agtaggacagtctgatgaaagtgctccaaaggaaaggcaatccctctttggtggagctcg 1182

                                                                        
Query: 247  gccccgggaacaagttctcagagatcgtggtgtggatgctttggcaagtgaccttgagaa 306
            |||| ||||||||||||||||||| |||||  | |||||||| |||||||||||||| ||
Sbjct: 1183 gcccagggaacaagttctcagagagcgtggaatagatgctttagcaagtgaccttgataa 1242

                                                                        
Query: 307  cacctctccagttggcaggtcaaaaaatgagtttgcaaaggtcgagcagaaggttgaagc 366
             || ||||||||||||||||| |||| ||| ||||||||||  ||||||||||| |||||
Sbjct: 1243 gacatctccagttggcaggtctaaaagtgaatttgcaaagggtgagcagaaggtcgaagc 1302

                                                                        
Query: 367  tatgaccactaacccttcaggcgaaaaggctgagagttttccagttggtcacagaggccc 426
            |||| ||| |||||||||||| |||||||||||||||||||||| ||||   ||||||||
Sbjct: 1303 tatgtccattaacccttcaggtgaaaaggctgagagttttccagctggttctagaggccc 1362

                                                                        
Query: 427  aaggaatgctgatagaaaagattacaggcgggatacagacagggttgatggatacaggcc 486
            ||||||||||||||  ||||| |||||||||||||||||| ||  |||||  || |||||
Sbjct: 1363 aaggaatgctgataagaaagactacaggcgggatacagaccggagtgatgtgtataggcc 1422

                                                                        
Query: 487  tacacgacgtgaggagaacaggaaggttgctagagatgtggaaaagcagcctgaacaaca 546
            ||||||||| ||||| |||||||  ||||||||||||||||   || |||| || |||||
Sbjct: 1423 tacacgacgggaggacaacaggagagttgctagagatgtgg---agaagcccgagcaaca 1479

                                                              
Query: 547  acgcccagagcctgaaacctggcgtaaaccagtggagccaccaaagcctg 596
             || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1480 gcgtccagagcctgaaacctggcgtaagccagttgagccaccaaagcctg 1529

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>dbj|AK100024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146D04, full
            insert sequence
          Length = 2198

 Score =  456 bits (230), Expect = e-125
 Identities = 501/590 (84%), Gaps = 6/590 (1%)
 Strand = Plus / Plus

                                                                        
Query: 7    ctatgttgaagagaagcaggtccttccggtccctgtgatagcgagtgtcatgcaggttga 66
            ||||||||||||||||||||| | || ||| || ||| | |||| |    ||||||||||
Sbjct: 947  ctatgttgaagagaagcaggtgcatcaggttccagtggtcgcgaatactgtgcaggttga 1006

                                                                        
Query: 67   ggttgttcatgaagtgcgccagaatgtgatcgtagctaaaatgggagtggcaggggcaga 126
             ||| ||||||| |||| |||||||||  | | | |||||   ||||| |||||||||||
Sbjct: 1007 cgttattcatgatgtgcaccagaatgttgtagcacctaaagcaggagtagcaggggcaga 1066

                                                                        
Query: 127  tgctgaaagcagggcaaccgtggagcgaccacggctgaatctgaaacctcgctctaatac 186
            ||||||  || |||||   ||||||||||||||  ||||||||||||| ||||| ||| |
Sbjct: 1067 tgctgagggccgggca---gtggagcgaccacgattgaatctgaaaccccgctccaatgc 1123

                                                                        
Query: 187  agtgggtcagtctggtgaaagtgctgcgaaggagaggccatccctctttggtggtgctcg 246
            ||| || ||||||| |||||||||| | ||||| |||| ||||||||||||||| |||||
Sbjct: 1124 agtaggacagtctgatgaaagtgctccaaaggaaaggcaatccctctttggtggagctcg 1183

                                                                        
Query: 247  gccccgggaacaagttctcagagatcgtggtgtggatgctttggcaagtgaccttgagaa 306
            |||| ||||||||||||||||||| |||||  | |||||||| |||||||||||||| ||
Sbjct: 1184 gcccagggaacaagttctcagagagcgtggaatagatgctttagcaagtgaccttgataa 1243

                                                                        
Query: 307  cacctctccagttggcaggtcaaaaaatgagtttgcaaaggtcgagcagaaggttgaagc 366
             || ||||||||||||||||| |||| ||| ||||||||||  ||||||||||| |||||
Sbjct: 1244 gacatctccagttggcaggtctaaaagtgaatttgcaaagggtgagcagaaggtcgaagc 1303

                                                                        
Query: 367  tatgaccactaacccttcaggcgaaaaggctgagagttttccagttggtcacagaggccc 426
            |||| ||| |||||||||||| |||||||||||||||||||||| ||||   ||||||||
Sbjct: 1304 tatgtccattaacccttcaggtgaaaaggctgagagttttccagctggttctagaggccc 1363

                                                                        
Query: 427  aaggaatgctgatagaaaagattacaggcgggatacagacagggttgatggatacaggcc 486
            ||||||||||||||  ||||| |||||||||||||||||| ||  |||||  || |||||
Sbjct: 1364 aaggaatgctgataagaaagactacaggcgggatacagaccggagtgatgtgtataggcc 1423

                                                                        
Query: 487  tacacgacgtgaggagaacaggaaggttgctagagatgtggaaaagcagcctgaacaaca 546
            ||||||||| ||||| |||||||  ||||||||||||||||   || |||| || |||||
Sbjct: 1424 tacacgacgggaggacaacaggagagttgctagagatgtgg---agaagcccgagcaaca 1480

                                                              
Query: 547  acgcccagagcctgaaacctggcgtaaaccagtggagccaccaaagcctg 596
             || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1481 gcgtccagagcctgaaacctggcgtaagccagttgagccaccaaagcctg 1530

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>dbj|AK058282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D06, full
           insert sequence
          Length = 1394

 Score =  456 bits (230), Expect = e-125
 Identities = 501/590 (84%), Gaps = 6/590 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctatgttgaagagaagcaggtccttccggtccctgtgatagcgagtgtcatgcaggttga 66
           ||||||||||||||||||||| | || ||| || ||| | |||| |    ||||||||||
Sbjct: 205 ctatgttgaagagaagcaggtgcatcaggttccagtggtcgcgaatactgtgcaggttga 264

                                                                       
Query: 67  ggttgttcatgaagtgcgccagaatgtgatcgtagctaaaatgggagtggcaggggcaga 126
            ||| ||||||| |||| |||||||||  | | | |||||   ||||| |||||||||||
Sbjct: 265 cgttattcatgatgtgcaccagaatgttgtagcacctaaagcaggagtagcaggggcaga 324

                                                                       
Query: 127 tgctgaaagcagggcaaccgtggagcgaccacggctgaatctgaaacctcgctctaatac 186
           ||||||  || |||||   ||||||||||||||  ||||||||||||| ||||| ||| |
Sbjct: 325 tgctgagggccgggca---gtggagcgaccacgattgaatctgaaaccccgctccaatgc 381

                                                                       
Query: 187 agtgggtcagtctggtgaaagtgctgcgaaggagaggccatccctctttggtggtgctcg 246
           ||| || ||||||| |||||||||| | ||||| |||| ||||||||||||||| |||||
Sbjct: 382 agtaggacagtctgatgaaagtgctccaaaggaaaggcaatccctctttggtggagctcg 441

                                                                       
Query: 247 gccccgggaacaagttctcagagatcgtggtgtggatgctttggcaagtgaccttgagaa 306
           |||| ||||||||||||||||||| |||||  | |||||||| |||||||||||||| ||
Sbjct: 442 gcccagggaacaagttctcagagagcgtggaatagatgctttagcaagtgaccttgataa 501

                                                                       
Query: 307 cacctctccagttggcaggtcaaaaaatgagtttgcaaaggtcgagcagaaggttgaagc 366
            || ||||||||||||||||| |||| ||| ||||||||||  ||||||||||| |||||
Sbjct: 502 gacatctccagttggcaggtctaaaagtgaatttgcaaagggtgagcagaaggtcgaagc 561

                                                                       
Query: 367 tatgaccactaacccttcaggcgaaaaggctgagagttttccagttggtcacagaggccc 426
           |||| ||| |||||||||||| |||||||||||||||||||||| ||||   ||||||||
Sbjct: 562 tatgtccattaacccttcaggtgaaaaggctgagagttttccagctggttctagaggccc 621

                                                                       
Query: 427 aaggaatgctgatagaaaagattacaggcgggatacagacagggttgatggatacaggcc 486
           ||||||||||||||  ||||| |||||||||||||||||| ||  |||||  || |||||
Sbjct: 622 aaggaatgctgataagaaagactacaggcgggatacagaccggagtgatgtgtataggcc 681

                                                                       
Query: 487 tacacgacgtgaggagaacaggaaggttgctagagatgtggaaaagcagcctgaacaaca 546
           ||||||||| ||||| |||||||  ||||||||||||||||   || |||| || |||||
Sbjct: 682 tacacgacgggaggacaacaggagagttgctagagatgtgg---agaagcccgagcaaca 738

                                                             
Query: 547 acgcccagagcctgaaacctggcgtaaaccagtggagccaccaaagcctg 596
            || ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 739 gcgtccagagcctgaaacctggcgtaagccagttgagccaccaaagcctg 788

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  256 bits (129), Expect = 7e-65
 Identities = 239/275 (86%), Gaps = 3/275 (1%)
 Strand = Plus / Plus

                                                                            
Query: 322      caggtcaaaaaatgagtttgcaaaggtcgagcagaaggttgaagctatgaccactaaccc 381
                |||||| |||| ||| ||||||||||  ||||||||||| ||||||||| ||| ||||||
Sbjct: 21579029 caggtctaaaagtgaatttgcaaagggtgagcagaaggtcgaagctatgtccattaaccc 21579088

                                                                            
Query: 382      ttcaggcgaaaaggctgagagttttccagttggtcacagaggcccaaggaatgctgatag 441
                |||||| |||||||||||||||||||||| ||||   |||||||||||||||||||||| 
Sbjct: 21579089 ttcaggtgaaaaggctgagagttttccagctggttctagaggcccaaggaatgctgataa 21579148

                                                                            
Query: 442      aaaagattacaggcgggatacagacagggttgatggatacaggcctacacgacgtgagga 501
                 ||||| |||||||||||||||||| ||  |||||  || |||||||||||||| |||||
Sbjct: 21579149 gaaagactacaggcgggatacagaccggagtgatgtgtataggcctacacgacgggagga 21579208

                                                                            
Query: 502      gaacaggaaggttgctagagatgtggaaaagcagcctgaacaacaacgcccagagcctga 561
                 |||||||  ||||||||||||||||   || |||| || ||||| || |||||||||||
Sbjct: 21579209 caacaggagagttgctagagatgtgg---agaagcccgagcaacagcgtccagagcctga 21579265

                                                   
Query: 562      aacctggcgtaaaccagtggagccaccaaagcctg 596
                |||||||||||| ||||| ||||||||||||||||
Sbjct: 21579266 aacctggcgtaagccagttgagccaccaaagcctg 21579300



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 128/155 (82%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                            
Query: 57       tgcaggttgaggttgttcatgaagtgcgccagaatgtgatcgtagctaaaatgggagtgg 116
                |||||||||| ||| ||||||| |||| |||||||||  | | | |||||   ||||| |
Sbjct: 21577165 tgcaggttgacgttattcatgatgtgcaccagaatgttgtagcacctaaagcaggagtag 21577224

                                                                            
Query: 117      caggggcagatgctgaaagcagggcaaccgtggagcgaccacggctgaatctgaaacctc 176
                ||||||||||||||||  || |||||   ||||||||||||||  ||||||||||||| |
Sbjct: 21577225 caggggcagatgctgagggccgggca---gtggagcgaccacgattgaatctgaaacccc 21577281

                                                   
Query: 177      gctctaatacagtgggtcagtctggtgaaagtgct 211
                |||| ||| |||| || ||||||| ||||||||||
Sbjct: 21577282 gctccaatgcagtaggacagtctgatgaaagtgct 21577316



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                            
Query: 260      gttctcagagatcgtggtgtggatgctttggcaagtgaccttgagaacacctctccagtt 319
                ||||||||||| |||||  | |||||||| |||||||||||||| || || |||||||||
Sbjct: 21578421 gttctcagagagcgtggaatagatgctttagcaagtgaccttgataagacatctccagtt 21578480

                       
Query: 320      ggcaggt 326
                |||||||
Sbjct: 21578481 ggcaggt 21578487



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                         
Query: 221      aggccatccctctttggtggtgctcggccccgggaacaagt 261
                |||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 21578252 aggcaatccctctttggtggagctcggcccagggaacaagt 21578292



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 7        ctatgttgaagagaagcaggt 27
                |||||||||||||||||||||
Sbjct: 21576884 ctatgttgaagagaagcaggt 21576904

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>dbj|AP004235.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0006G05
          Length = 56865

 Score =  256 bits (129), Expect = 7e-65
 Identities = 239/275 (86%), Gaps = 3/275 (1%)
 Strand = Plus / Plus

                                                                         
Query: 322   caggtcaaaaaatgagtttgcaaaggtcgagcagaaggttgaagctatgaccactaaccc 381
             |||||| |||| ||| ||||||||||  ||||||||||| ||||||||| ||| ||||||
Sbjct: 25403 caggtctaaaagtgaatttgcaaagggtgagcagaaggtcgaagctatgtccattaaccc 25462

                                                                         
Query: 382   ttcaggcgaaaaggctgagagttttccagttggtcacagaggcccaaggaatgctgatag 441
             |||||| |||||||||||||||||||||| ||||   |||||||||||||||||||||| 
Sbjct: 25463 ttcaggtgaaaaggctgagagttttccagctggttctagaggcccaaggaatgctgataa 25522

                                                                         
Query: 442   aaaagattacaggcgggatacagacagggttgatggatacaggcctacacgacgtgagga 501
              ||||| |||||||||||||||||| ||  |||||  || |||||||||||||| |||||
Sbjct: 25523 gaaagactacaggcgggatacagaccggagtgatgtgtataggcctacacgacgggagga 25582

                                                                         
Query: 502   gaacaggaaggttgctagagatgtggaaaagcagcctgaacaacaacgcccagagcctga 561
              |||||||  ||||||||||||||||   || |||| || ||||| || |||||||||||
Sbjct: 25583 caacaggagagttgctagagatgtgg---agaagcccgagcaacagcgtccagagcctga 25639

                                                
Query: 562   aacctggcgtaaaccagtggagccaccaaagcctg 596
             |||||||||||| ||||| ||||||||||||||||
Sbjct: 25640 aacctggcgtaagccagttgagccaccaaagcctg 25674



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 128/155 (82%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                         
Query: 57    tgcaggttgaggttgttcatgaagtgcgccagaatgtgatcgtagctaaaatgggagtgg 116
             |||||||||| ||| ||||||| |||| |||||||||  | | | |||||   ||||| |
Sbjct: 23539 tgcaggttgacgttattcatgatgtgcaccagaatgttgtagcacctaaagcaggagtag 23598

                                                                         
Query: 117   caggggcagatgctgaaagcagggcaaccgtggagcgaccacggctgaatctgaaacctc 176
             ||||||||||||||||  || |||||   ||||||||||||||  ||||||||||||| |
Sbjct: 23599 caggggcagatgctgagggccgggca---gtggagcgaccacgattgaatctgaaacccc 23655

                                                
Query: 177   gctctaatacagtgggtcagtctggtgaaagtgct 211
             |||| ||| |||| || ||||||| ||||||||||
Sbjct: 23656 gctccaatgcagtaggacagtctgatgaaagtgct 23690



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                         
Query: 260   gttctcagagatcgtggtgtggatgctttggcaagtgaccttgagaacacctctccagtt 319
             ||||||||||| |||||  | |||||||| |||||||||||||| || || |||||||||
Sbjct: 24795 gttctcagagagcgtggaatagatgctttagcaagtgaccttgataagacatctccagtt 24854

                    
Query: 320   ggcaggt 326
             |||||||
Sbjct: 24855 ggcaggt 24861



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                      
Query: 221   aggccatccctctttggtggtgctcggccccgggaacaagt 261
             |||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 24626 aggcaatccctctttggtggagctcggcccagggaacaagt 24666



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     ctatgttgaagagaagcaggt 27
             |||||||||||||||||||||
Sbjct: 23258 ctatgttgaagagaagcaggt 23278

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>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OJ1612_A04
          Length = 124833

 Score =  256 bits (129), Expect = 7e-65
 Identities = 239/275 (86%), Gaps = 3/275 (1%)
 Strand = Plus / Plus

                                                                        
Query: 322  caggtcaaaaaatgagtttgcaaaggtcgagcagaaggttgaagctatgaccactaaccc 381
            |||||| |||| ||| ||||||||||  ||||||||||| ||||||||| ||| ||||||
Sbjct: 9485 caggtctaaaagtgaatttgcaaagggtgagcagaaggtcgaagctatgtccattaaccc 9544

                                                                        
Query: 382  ttcaggcgaaaaggctgagagttttccagttggtcacagaggcccaaggaatgctgatag 441
            |||||| |||||||||||||||||||||| ||||   |||||||||||||||||||||| 
Sbjct: 9545 ttcaggtgaaaaggctgagagttttccagctggttctagaggcccaaggaatgctgataa 9604

                                                                        
Query: 442  aaaagattacaggcgggatacagacagggttgatggatacaggcctacacgacgtgagga 501
             ||||| |||||||||||||||||| ||  |||||  || |||||||||||||| |||||
Sbjct: 9605 gaaagactacaggcgggatacagaccggagtgatgtgtataggcctacacgacgggagga 9664

                                                                        
Query: 502  gaacaggaaggttgctagagatgtggaaaagcagcctgaacaacaacgcccagagcctga 561
             |||||||  ||||||||||||||||   || |||| || ||||| || |||||||||||
Sbjct: 9665 caacaggagagttgctagagatgtgg---agaagcccgagcaacagcgtccagagcctga 9721

                                               
Query: 562  aacctggcgtaaaccagtggagccaccaaagcctg 596
            |||||||||||| ||||| ||||||||||||||||
Sbjct: 9722 aacctggcgtaagccagttgagccaccaaagcctg 9756



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 128/155 (82%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                        
Query: 57   tgcaggttgaggttgttcatgaagtgcgccagaatgtgatcgtagctaaaatgggagtgg 116
            |||||||||| ||| ||||||| |||| |||||||||  | | | |||||   ||||| |
Sbjct: 7621 tgcaggttgacgttattcatgatgtgcaccagaatgttgtagcacctaaagcaggagtag 7680

                                                                        
Query: 117  caggggcagatgctgaaagcagggcaaccgtggagcgaccacggctgaatctgaaacctc 176
            ||||||||||||||||  || |||||   ||||||||||||||  ||||||||||||| |
Sbjct: 7681 caggggcagatgctgagggccgggca---gtggagcgaccacgattgaatctgaaacccc 7737

                                               
Query: 177  gctctaatacagtgggtcagtctggtgaaagtgct 211
            |||| ||| |||| || ||||||| ||||||||||
Sbjct: 7738 gctccaatgcagtaggacagtctgatgaaagtgct 7772



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 59/67 (88%)
 Strand = Plus / Plus

                                                                        
Query: 260  gttctcagagatcgtggtgtggatgctttggcaagtgaccttgagaacacctctccagtt 319
            ||||||||||| |||||  | |||||||| |||||||||||||| || || |||||||||
Sbjct: 8877 gttctcagagagcgtggaatagatgctttagcaagtgaccttgataagacatctccagtt 8936

                   
Query: 320  ggcaggt 326
            |||||||
Sbjct: 8937 ggcaggt 8943



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 221  aggccatccctctttggtggtgctcggccccgggaacaagt 261
            |||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 8708 aggcaatccctctttggtggagctcggcccagggaacaagt 8748



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 7    ctatgttgaagagaagcaggt 27
            |||||||||||||||||||||
Sbjct: 7340 ctatgttgaagagaagcaggt 7360

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>gb|AY106172.1| Zea mays PCO060652 mRNA sequence
          Length = 1055

 Score =  246 bits (124), Expect = 7e-62
 Identities = 310/372 (83%)
 Strand = Plus / Plus

                                                                       
Query: 223 gccatccctctttggtggtgctcggccccgggaacaagttctcagagatcgtggtgtgga 282
           |||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||| |||||
Sbjct: 21  gccatccctctttggtggtgctcgcccccgtgaacaagttctcaaagaacgtggagtgga 80

                                                                       
Query: 283 tgctttggcaagtgaccttgagaacacctctccagttggcaggtcaaaaaatgagtttgc 342
           || |||||| ||||| ||||||   |  || |||||||||||||| |||  ||| |||||
Sbjct: 81  tgttttggccagtgatcttgagcggatttcaccagttggcaggtctaaaggtgaatttgc 140

                                                                       
Query: 343 aaaggtcgagcagaaggttgaagctatgaccactaacccttcaggcgaaaaggctgagag 402
           ||||||||||||||||||||||||| || ||| |||||||||    ||||  |||||  |
Sbjct: 141 aaaggtcgagcagaaggttgaagctttgtccattaacccttctcttgaaagagctgatgg 200

                                                                       
Query: 403 ttttccagttggtcacagaggcccaaggaatgctgatagaaaagattacaggcgggatac 462
           |||| ||| |||||| ||||||||||||| || |||||  || |||||||||||||||||
Sbjct: 201 tttttcagctggtcatagaggcccaaggagtgttgataagaaggattacaggcgggatac 260

                                                                       
Query: 463 agacagggttgatggatacaggcctacacgacgtgaggagaacaggaaggttgctagaga 522
            || | || ||||| ||| |||||| | || || ||||| ||||||| ||| ||||||||
Sbjct: 261 tgagaaggctgatgcatataggccttctcgtcgggaggataacaggagggtcgctagaga 320

                                                                       
Query: 523 tgtggaaaagcagcctgaacaacaacgcccagagcctgaaacctggcgtaaaccagtgga 582
           | |||| ||||  |  || |||| ||||||||||||||| || |||||||| ||||||||
Sbjct: 321 tatggagaagccacaggagcaaccacgcccagagcctgagacatggcgtaagccagtgga 380

                       
Query: 583 gccaccaaagcc 594
           ||| ||||||||
Sbjct: 381 gcctccaaagcc 392

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>gb|AY020474.1| Oryza sativa microsatellite MRG2799 containing (GA)X19, genomic
           sequence
          Length = 238

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 221 aggccatccctctttggtggtgctcggccccgggaacaagt 261
           |||| ||||||||||||||| ||||||||| ||||||||||
Sbjct: 188 aggcaatccctctttggtggagctcggcccagggaacaagt 148

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>gb|AC159293.2| Mus musculus BAC clone RP23-282K7 from chromosome 12, complete sequence
          Length = 181226

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 409   agttggtcacagaggcccaagg 430
             ||||||||||||||||||||||
Sbjct: 73777 agttggtcacagaggcccaagg 73798

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>ref|NM_197788.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0057L21.26), mRNA
          Length = 588

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 148 ggagcgaccacggctgaatctgaaacctcgctc 180
           ||||||| |||| |||||||||||| |||||||
Sbjct: 504 ggagcgagcacgactgaatctgaaatctcgctc 536

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>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete
              sequence
          Length = 183046

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 148    ggagcgaccacggctgaatctgaaacctcgctc 180
              ||||||| |||| |||||||||||| |||||||
Sbjct: 126464 ggagcgagcacgactgaatctgaaatctcgctc 126432

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 148      ggagcgaccacggctgaatctgaaacctcgctc 180
                ||||||| |||| |||||||||||| |||||||
Sbjct: 21881857 ggagcgagcacgactgaatctgaaatctcgctc 21881889

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>dbj|AK122019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111M24, full
           insert sequence
          Length = 2830

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 148 ggagcgaccacggctgaatctgaaacctcgctc 180
           ||||||| |||| |||||||||||| |||||||
Sbjct: 727 ggagcgagcacgactgaatctgaaatctcgctc 759

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>dbj|AK109505.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A02, full
           insert sequence
          Length = 2257

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 148 ggagcgaccacggctgaatctgaaacctcgctc 180
           ||||||| |||| |||||||||||| |||||||
Sbjct: 671 ggagcgagcacgactgaatctgaaatctcgctc 703

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 148      ggagcgaccacggctgaatctgaaacctcgctc 180
                ||||||| |||| |||||||||||| |||||||
Sbjct: 21893520 ggagcgagcacgactgaatctgaaatctcgctc 21893552

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>gb|AY307231.1| Corydoras sodalis voucher LBP434 NADH dehydrogenase subunit 4 (ND4)
           gene, partial cds; tRNA-His gene, complete sequence; and
           tRNA-Ser gene, partial sequence; mitochondrial
          Length = 790

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  gtccctgtgatagcgagtgt 54
           ||||||||||||||||||||
Sbjct: 485 gtccctgtgatagcgagtgt 466

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>ref|XM_366861.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG02937.4) partial mRNA
          Length = 2922

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 335 gagtttgcaaaggtcgagcagaag 358
           |||||||||||||||||| |||||
Sbjct: 793 gagtttgcaaaggtcgaggagaag 816

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>gb|AE009373.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 143 of
             187 of the complete sequence
          Length = 13358

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   gatcgtggtgtggatgcttt 288
             ||||||||||||||||||||
Sbjct: 11883 gatcgtggtgtggatgcttt 11902

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>gb|AE009247.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 17 of
            187 of the complete sequence
          Length = 12792

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  gatcgtggtgtggatgcttt 288
            ||||||||||||||||||||
Sbjct: 1430 gatcgtggtgtggatgcttt 1449

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>gb|AE008366.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 170 of
             187 of the complete sequence
          Length = 12745

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   gatcgtggtgtggatgcttt 288
             ||||||||||||||||||||
Sbjct: 11317 gatcgtggtgtggatgcttt 11298

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>gb|AE008240.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 44 of 187
             of the complete sequence
          Length = 14945

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   gatcgtggtgtggatgcttt 288
             ||||||||||||||||||||
Sbjct: 13468 gatcgtggtgtggatgcttt 13449

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>ref|XM_966242.1| PREDICTED: Tribolium castaneum similar to Tramtrack protein, beta
            isoform (Tramtrack p69) (Fushi tarazu repressor protein)
            (LOC659978), mRNA
          Length = 1911

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 533  cagcctgaacaacaacgccc 552
            ||||||||||||||||||||
Sbjct: 1422 cagcctgaacaacaacgccc 1441

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>emb|AL670399.4| Mouse DNA sequence from clone RP23-263M10 on chromosome 11 Contains the
              3' end of the Atp2a3 gene for ubiquitous Ca++ transporting
              ATPase, the P2rx1 and P2rx5 genes for purinergic receptor
              P2X ligand-gated ion channel 1 and 5, 111 novel genes, the
              Camkk1 gene for calcium/calmodulin-dependent protein kinase
              kinase 1 alpha, the Itgae gene for epithelial-associated
              integrin alpha E, the Gsg2 gene for germ cell-specific gene
              2 protein, the gene for a novel protein similar to human
              tax interacting protein 1, the Ctns gene for nephropathic
              cystinosis protein and five CpG islands, complete sequence
          Length = 224037

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    tgctttggcaagtgaccttg 302
              ||||||||||||||||||||
Sbjct: 216591 tgctttggcaagtgaccttg 216610

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>emb|AL928651.13| Mouse DNA sequence from clone RP23-167A19 on chromosome 4 Contains a
             3-hydroxyisobutyrate dehydrogenase, mitochondrial
             precursor (Hibadh) pseudogene and a CpG island, complete
             sequence
          Length = 157883

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   gtgaccttgagaacacctct 313
             ||||||||||||||||||||
Sbjct: 46147 gtgaccttgagaacacctct 46128

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>emb|AL832425.1|HSM803733 Homo sapiens mRNA; cDNA DKFZp762P042 (from clone DKFZp762P042)
          Length = 6255

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tggcaggggcagatgctgaa 133
           ||||||||||||||||||||
Sbjct: 498 tggcaggggcagatgctgaa 479

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>ref|NM_001039963.1| Pan troglodytes cytospin A (LOC458713), mRNA
          Length = 4459

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tggcaggggcagatgctgaa 133
           ||||||||||||||||||||
Sbjct: 413 tggcaggggcagatgctgaa 394

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>gb|AC154127.2| Ornithorhynchus anatinus BAC clone OABb-20A1 from chromosome unknown,
             complete sequence
          Length = 188107

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   ctttggcaagtgaccttgag 304
             ||||||||||||||||||||
Sbjct: 84656 ctttggcaagtgaccttgag 84675

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>ref|NM_015330.1| Homo sapiens KIAA0376 protein (KIAA0376), mRNA
          Length = 6255

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tggcaggggcagatgctgaa 133
           ||||||||||||||||||||
Sbjct: 498 tggcaggggcagatgctgaa 479

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>dbj|AK097129.1| Homo sapiens cDNA FLJ39810 fis, clone SPLEN2009555
          Length = 2558

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tggcaggggcagatgctgaa 133
           ||||||||||||||||||||
Sbjct: 463 tggcaggggcagatgctgaa 444

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>gb|AC090964.10| Papio anubis clone rp41-177g23, complete sequence
          Length = 182747

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tggcaggggcagatgctgaa 133
             ||||||||||||||||||||
Sbjct: 71297 tggcaggggcagatgctgaa 71316

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>gb|BC005093.1|BC005093 Homo sapiens, clone IMAGE:3843328, mRNA
          Length = 2275

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tggcaggggcagatgctgaa 133
           ||||||||||||||||||||
Sbjct: 497 tggcaggggcagatgctgaa 478

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>gb|AY884294.1| Pan troglodytes cytospin A mRNA, complete cds
          Length = 4459

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tggcaggggcagatgctgaa 133
           ||||||||||||||||||||
Sbjct: 413 tggcaggggcagatgctgaa 394

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>gb|AY884293.1| Homo sapiens cytospin A mRNA, complete cds
          Length = 4450

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tggcaggggcagatgctgaa 133
           ||||||||||||||||||||
Sbjct: 403 tggcaggggcagatgctgaa 384

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>gb|AC007179.3| Homo sapiens BAC clone RP11-569H17 from 2, complete sequence
          Length = 159791

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 570    gtaaaccagtggagccacca 589
              ||||||||||||||||||||
Sbjct: 106329 gtaaaccagtggagccacca 106310

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>emb|CT476832.2| Pig DNA sequence from clone XX-BE284E13 on chromosome 11, complete
              sequence
          Length = 180778

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      tatgttgaagagaagcaggt 27
              ||||||||||||||||||||
Sbjct: 162887 tatgttgaagagaagcaggt 162906

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>gb|AC154585.2| Mus musculus BAC clone RP23-359K10 from 12, complete sequence
          Length = 198520

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   gaggagaacaggaaggttgc 516
             ||||||||||||||||||||
Sbjct: 48647 gaggagaacaggaaggttgc 48628

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>dbj|AB209022.1| Homo sapiens mRNA for KIAA0376 protein variant protein
          Length = 6203

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 tggcaggggcagatgctgaa 133
           ||||||||||||||||||||
Sbjct: 498 tggcaggggcagatgctgaa 479

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>gb|AC165249.2| Mus musculus BAC clone RP24-157P13 from chromosome 12, complete
             sequence
          Length = 193902

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 497   gaggagaacaggaaggttgc 516
             ||||||||||||||||||||
Sbjct: 26215 gaggagaacaggaaggttgc 26234

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>dbj|AP000354.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone KB1674E1
          Length = 164756

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tggcaggggcagatgctgaa 133
             ||||||||||||||||||||
Sbjct: 91959 tggcaggggcagatgctgaa 91940


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,210,348
Number of Sequences: 3902068
Number of extensions: 5210348
Number of successful extensions: 91782
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91631
Number of HSP's gapped (non-prelim): 136
length of query: 596
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 573
effective length of database: 17,143,297,704
effective search space: 9823109584392
effective search space used: 9823109584392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result