ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags26e20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473889.1| Oryza sativa (japonica cultivar-group), predic... 232 1e-57
2emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4,... 232 1e-57
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 232 1e-57
4dbj|AK072027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
5gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete s... 48 0.033
6gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete s... 48 0.033
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.13
8gb|AC161107.24| Medicago truncatula clone mth2-192o12, complete ... 46 0.13
9gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.13
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
12dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
13dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
14ref|XM_470548.1| Oryza sativa (japonica cultivar-group), predic... 44 0.52
15emb|AL359253.17| Human DNA sequence from clone RP11-428L19 on ch... 44 0.52
16emb|CR931734.2| Medicago truncatula chromosome 5 clone mth2-62m2... 44 0.52
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.52
18dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.52
19dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.52
20dbj|AK101197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.52
21dbj|AK067807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.52
22gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.52
23ref|XM_469069.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
24gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl... 42 2.1
25gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genom... 42 2.1
26gb|AC133167.3| Mus musculus BAC clone RP24-211H4 from chromosome... 42 2.1
27gb|AC131787.3| Mus musculus BAC clone RP24-397K14 from chromosom... 42 2.1
28gb|DQ127630.1| Emiliania huxleyi virus 163 clone new249.seq part... 42 2.1
29gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genom... 42 2.1
30gb|AC183492.1| Brassica oleracea Contig G, complete sequence 42 2.1
31dbj|AK120778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
32dbj|AK120058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
33gb|AC120429.6| Mus musculus chromosome 18, clone RP24-546J19, co... 42 2.1
34emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 42 2.1
35gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, comple... 42 2.1
36dbj|AB007468.1| Xenopus laevis mRNA for alpha-2,8-polysialyltran... 42 2.1
37ref|NM_118441.1| Arabidopsis thaliana DNA binding AT4G23120 mRNA... 40 8.1
38gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genom... 40 8.1
39gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete s... 40 8.1
40gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete s... 40 8.1
41emb|AL450425.13| Human DNA sequence from clone RP11-219C11 on ch... 40 8.1
42emb|AL365499.19| Human DNA sequence from clone RP11-227E22 on ch... 40 8.1
43emb|AL138930.15| Human DNA sequence from clone RP11-528G1 on chr... 40 8.1
44emb|AL133335.29| Human DNA sequence from clone RP5-1162C3 on chr... 40 8.1
45gb|AC023049.14| Homo sapiens 3 BAC RP11-468F18 (Roswell Park Can... 40 8.1
46emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encepha... 40 8.1
47emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, ... 40 8.1
48emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BA... 40 8.1
49emb|AL022347.1|ATF21P8 Arabidopsis thaliana DNA chromosome 4, BA... 40 8.1
50dbj|AB240683.1| Leptospira interrogans serovar Manilae lipL45 mR... 40 8.1
51dbj|AB240682.1| Leptospira interrogans serovar Icterohaemorrhagi... 40 8.1
52gb|AC092365.3| Homo sapiens chromosome 16 clone RP11-450B4, comp... 40 8.1
53gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 8.1
54gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 8.1
55emb|CT485992.1| S.lycopersicum DNA sequence from clone LE_HBa-31... 40 8.1
56gb|AF037073.1|AF037073 Xenopus laevis Rho-associated kinase alph... 40 8.1 
>ref|XM_473889.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2886

 Score =  232 bits (117), Expect = 1e-57
 Identities = 282/337 (83%)
 Strand = Plus / Plus

                                                                        
Query: 25   cagaatttgtgcaggatcataatcaccagcttgctggtccaattgatattgggatgctga 84
            ||||||||||| | ||||| ||||||||||||||||  ||| ||||||| |  |||||||
Sbjct: 815  cagaatttgtggaagatcacaatcaccagcttgctgcaccatttgatatagatatgctga 874

                                                                        
Query: 85   agtcgcaaagattattgtccaaggttcaatctggaaatggaaatgccataagcattcctc 144
            ||||  | ||| | ||| ||||||||||| | |||||  ||||||| |  | ||||||||
Sbjct: 875  agtcagagagagtgttgaccaaggttcaaccaggaaaccgaaatgctagtaacattcctc 934

                                                                        
Query: 145  caaggtacaagaattatcttcggaccaagtctacaaacgatatgaacgcagaggatttca 204
            || | | |||||||||  ||||| |||||||| |||   | |||||  |||||||  |  
Sbjct: 935  caggatgcaagaattacattcgggccaagtcttcaacacacatgaattcagaggaccttg 994

                                                                        
Query: 205  gagctcttacggattattttcgaagtatgaagagtgataatccatctttttactatgcca 264
            ||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 995  gagctctaatggattattttcgaagaatgaagagtgataatccctctttttactatgcca 1054

                                                                        
Query: 265  tccagttggatgaaaatgacaaagctgctaatgtcttttgggctgatgcaagatcaatct 324
            | ||| ||||||||||||| |||||  | |||||||| ||||||||||||||||||||  
Sbjct: 1055 ttcaggtggatgaaaatgataaagcaacaaatgtcttctgggctgatgcaagatcaatag 1114

                                                 
Query: 325  tcgactatcattatttcagtgatgtgatctgctttga 361
            | ||||||||||||||| |||||||||||||||||||
Sbjct: 1115 tagactatcattatttctgtgatgtgatctgctttga 1151



 Score =  228 bits (115), Expect = 2e-56
 Identities = 160/175 (91%)
 Strand = Plus / Plus

                                                                        
Query: 397  tagctttgtttttgggtatgaaccatcatagacaaatggtcatatttggtgctgctttcc 456
            ||||||||||||||||||||||||||||||| ||||   ||||||||||  ||||||| |
Sbjct: 1187 tagctttgtttttgggtatgaaccatcataggcaaacaatcatatttggctctgcttttc 1246

                                                                        
Query: 457  tgtatgatgaaacggctgaatctttcaagtggcttcttgagacctttaagagtgccatgt 516
            ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1247 tgtatgatgaaactgttgaatctttcaagtggcttctcgagacctttaagagtgccatgt 1306

                                                                   
Query: 517  gtgggaaacagcccaagacaattttgacggatcgatctgctactttgaaggaagc 571
            ||||||||||||| ||||| || ||||| |||||||||||| |||||||||||||
Sbjct: 1307 gtgggaaacagccaaagacgatattgacagatcgatctgctgctttgaaggaagc 1361
to top
>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
              complete sequence
          Length = 133279

 Score =  232 bits (117), Expect = 1e-57
 Identities = 282/337 (83%)
 Strand = Plus / Minus

                                                                          
Query: 25     cagaatttgtgcaggatcataatcaccagcttgctggtccaattgatattgggatgctga 84
              ||||||||||| | ||||| ||||||||||||||||  ||| ||||||| |  |||||||
Sbjct: 108197 cagaatttgtggaagatcacaatcaccagcttgctgcaccatttgatatagatatgctga 108138

                                                                          
Query: 85     agtcgcaaagattattgtccaaggttcaatctggaaatggaaatgccataagcattcctc 144
              ||||  | ||| | ||| ||||||||||| | |||||  ||||||| |  | ||||||||
Sbjct: 108137 agtcagagagagtgttgaccaaggttcaaccaggaaaccgaaatgctagtaacattcctc 108078

                                                                          
Query: 145    caaggtacaagaattatcttcggaccaagtctacaaacgatatgaacgcagaggatttca 204
              || | | |||||||||  ||||| |||||||| |||   | |||||  |||||||  |  
Sbjct: 108077 caggatgcaagaattacattcgggccaagtcttcaacacacatgaattcagaggaccttg 108018

                                                                          
Query: 205    gagctcttacggattattttcgaagtatgaagagtgataatccatctttttactatgcca 264
              ||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 108017 gagctctaatggattattttcgaagaatgaagagtgataatccctctttttactatgcca 107958

                                                                          
Query: 265    tccagttggatgaaaatgacaaagctgctaatgtcttttgggctgatgcaagatcaatct 324
              | ||| ||||||||||||| |||||  | |||||||| ||||||||||||||||||||  
Sbjct: 107957 ttcaggtggatgaaaatgataaagcaacaaatgtcttctgggctgatgcaagatcaatag 107898

                                                   
Query: 325    tcgactatcattatttcagtgatgtgatctgctttga 361
              | ||||||||||||||| |||||||||||||||||||
Sbjct: 107897 tagactatcattatttctgtgatgtgatctgctttga 107861



 Score =  228 bits (115), Expect = 2e-56
 Identities = 160/175 (91%)
 Strand = Plus / Minus

                                                                          
Query: 397    tagctttgtttttgggtatgaaccatcatagacaaatggtcatatttggtgctgctttcc 456
              ||||||||||||||||||||||||||||||| ||||   ||||||||||  ||||||| |
Sbjct: 107825 tagctttgtttttgggtatgaaccatcataggcaaacaatcatatttggctctgcttttc 107766

                                                                          
Query: 457    tgtatgatgaaacggctgaatctttcaagtggcttcttgagacctttaagagtgccatgt 516
              ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 107765 tgtatgatgaaactgttgaatctttcaagtggcttctcgagacctttaagagtgccatgt 107706

                                                                     
Query: 517    gtgggaaacagcccaagacaattttgacggatcgatctgctactttgaaggaagc 571
              ||||||||||||| ||||| || ||||| |||||||||||| |||||||||||||
Sbjct: 107705 gtgggaaacagccaaagacgatattgacagatcgatctgctgctttgaaggaagc 107651
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  232 bits (117), Expect = 1e-57
 Identities = 282/337 (83%)
 Strand = Plus / Minus

                                                                            
Query: 25       cagaatttgtgcaggatcataatcaccagcttgctggtccaattgatattgggatgctga 84
                ||||||||||| | ||||| ||||||||||||||||  ||| ||||||| |  |||||||
Sbjct: 31286595 cagaatttgtggaagatcacaatcaccagcttgctgcaccatttgatatagatatgctga 31286536

                                                                            
Query: 85       agtcgcaaagattattgtccaaggttcaatctggaaatggaaatgccataagcattcctc 144
                ||||  | ||| | ||| ||||||||||| | |||||  ||||||| |  | ||||||||
Sbjct: 31286535 agtcagagagagtgttgaccaaggttcaaccaggaaaccgaaatgctagtaacattcctc 31286476

                                                                            
Query: 145      caaggtacaagaattatcttcggaccaagtctacaaacgatatgaacgcagaggatttca 204
                || | | |||||||||  ||||| |||||||| |||   | |||||  |||||||  |  
Sbjct: 31286475 caggatgcaagaattacattcgggccaagtcttcaacacacatgaattcagaggaccttg 31286416

                                                                            
Query: 205      gagctcttacggattattttcgaagtatgaagagtgataatccatctttttactatgcca 264
                ||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 31286415 gagctctaatggattattttcgaagaatgaagagtgataatccctctttttactatgcca 31286356

                                                                            
Query: 265      tccagttggatgaaaatgacaaagctgctaatgtcttttgggctgatgcaagatcaatct 324
                | ||| ||||||||||||| |||||  | |||||||| ||||||||||||||||||||  
Sbjct: 31286355 ttcaggtggatgaaaatgataaagcaacaaatgtcttctgggctgatgcaagatcaatag 31286296

                                                     
Query: 325      tcgactatcattatttcagtgatgtgatctgctttga 361
                | ||||||||||||||| |||||||||||||||||||
Sbjct: 31286295 tagactatcattatttctgtgatgtgatctgctttga 31286259



 Score =  228 bits (115), Expect = 2e-56
 Identities = 160/175 (91%)
 Strand = Plus / Minus

                                                                            
Query: 397      tagctttgtttttgggtatgaaccatcatagacaaatggtcatatttggtgctgctttcc 456
                ||||||||||||||||||||||||||||||| ||||   ||||||||||  ||||||| |
Sbjct: 31286223 tagctttgtttttgggtatgaaccatcataggcaaacaatcatatttggctctgcttttc 31286164

                                                                            
Query: 457      tgtatgatgaaacggctgaatctttcaagtggcttcttgagacctttaagagtgccatgt 516
                ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31286163 tgtatgatgaaactgttgaatctttcaagtggcttctcgagacctttaagagtgccatgt 31286104

                                                                       
Query: 517      gtgggaaacagcccaagacaattttgacggatcgatctgctactttgaaggaagc 571
                ||||||||||||| ||||| || ||||| |||||||||||| |||||||||||||
Sbjct: 31286103 gtgggaaacagccaaagacgatattgacagatcgatctgctgctttgaaggaagc 31286049
to top
>dbj|AK072027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106I23, full
            insert sequence
          Length = 2079

 Score =  232 bits (117), Expect = 1e-57
 Identities = 282/337 (83%)
 Strand = Plus / Plus

                                                                        
Query: 25   cagaatttgtgcaggatcataatcaccagcttgctggtccaattgatattgggatgctga 84
            ||||||||||| | ||||| ||||||||||||||||  ||| ||||||| |  |||||||
Sbjct: 841  cagaatttgtggaagatcacaatcaccagcttgctgcaccatttgatatagatatgctga 900

                                                                        
Query: 85   agtcgcaaagattattgtccaaggttcaatctggaaatggaaatgccataagcattcctc 144
            ||||  | ||| | ||| ||||||||||| | |||||  ||||||| |  | ||||||||
Sbjct: 901  agtcagagagagtgttgaccaaggttcaaccaggaaaccgaaatgctagtaacattcctc 960

                                                                        
Query: 145  caaggtacaagaattatcttcggaccaagtctacaaacgatatgaacgcagaggatttca 204
            || | | |||||||||  ||||| |||||||| |||   | |||||  |||||||  |  
Sbjct: 961  caggatgcaagaattacattcgggccaagtcttcaacacacatgaattcagaggaccttg 1020

                                                                        
Query: 205  gagctcttacggattattttcgaagtatgaagagtgataatccatctttttactatgcca 264
            ||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 1021 gagctctaatggattattttcgaagaatgaagagtgataatccctctttttactatgcca 1080

                                                                        
Query: 265  tccagttggatgaaaatgacaaagctgctaatgtcttttgggctgatgcaagatcaatct 324
            | ||| ||||||||||||| |||||  | |||||||| ||||||||||||||||||||  
Sbjct: 1081 ttcaggtggatgaaaatgataaagcaacaaatgtcttctgggctgatgcaagatcaatag 1140

                                                 
Query: 325  tcgactatcattatttcagtgatgtgatctgctttga 361
            | ||||||||||||||| |||||||||||||||||||
Sbjct: 1141 tagactatcattatttctgtgatgtgatctgctttga 1177



 Score =  228 bits (115), Expect = 2e-56
 Identities = 160/175 (91%)
 Strand = Plus / Plus

                                                                        
Query: 397  tagctttgtttttgggtatgaaccatcatagacaaatggtcatatttggtgctgctttcc 456
            ||||||||||||||||||||||||||||||| ||||   ||||||||||  ||||||| |
Sbjct: 1213 tagctttgtttttgggtatgaaccatcataggcaaacaatcatatttggctctgcttttc 1272

                                                                        
Query: 457  tgtatgatgaaacggctgaatctttcaagtggcttcttgagacctttaagagtgccatgt 516
            ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1273 tgtatgatgaaactgttgaatctttcaagtggcttctcgagacctttaagagtgccatgt 1332

                                                                   
Query: 517  gtgggaaacagcccaagacaattttgacggatcgatctgctactttgaaggaagc 571
            ||||||||||||| ||||| || ||||| |||||||||||| |||||||||||||
Sbjct: 1333 gtgggaaacagccaaagacgatattgacagatcgatctgctgctttgaaggaagc 1387
to top
>gb|AC134521.41| Medicago truncatula clone mth2-31k24, complete sequence
          Length = 132267

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 294   aatgtcttttgggctgatgcaaga 317
             ||||||||||||||||||||||||
Sbjct: 30058 aatgtcttttgggctgatgcaaga 30081
to top
>gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete sequence
          Length = 135940

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 294    aatgtcttttgggctgatgcaaga 317
              ||||||||||||||||||||||||
Sbjct: 105288 aatgtcttttgggctgatgcaaga 105311
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                          
Query: 441     tttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggcttcttgagac 499
               |||||||||||| || |||||||||||||    || ||||||||||||||  |||||||
Sbjct: 9093924 tttggtgctgctctcatgtatgatgaaacattcgactctttcaagtggctctttgagac 9093982



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 437     catatttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggct 490
               ||||||||||||||| || || ||||||||| | |  || ||||||||||||||
Sbjct: 4256944 catatttggtgctgccttgctttatgatgaatcagaagagtctttcaagtggct 4256997



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 293      taatgtcttttgggctgatgcaaga 317
                |||| ||||||||||||||||||||
Sbjct: 25290855 taatatcttttgggctgatgcaaga 25290879



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 457      tgtatgatgaaacggctgaatctttcaagtggcttcttgagaccttta 504
                |||||||||||||   ||| |||||||||||| |  ||||||||||||
Sbjct: 15493100 tgtatgatgaaacatttgagtctttcaagtggttgtttgagaccttta 15493147
to top
>gb|AC161107.24| Medicago truncatula clone mth2-192o12, complete sequence
          Length = 106909

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 457   tgtatgatgaaacggctgaatctttcaagtggcttcttgagac 499
             ||||||||||||| |||||||| | |||||||||  |||||||
Sbjct: 62172 tgtatgatgaaacagctgaatcatacaagtggctctttgagac 62130
to top
>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0016G06, complete sequence
          Length = 119910

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 441   tttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggcttcttgagac 499
             |||||||||||| || |||||||||||||    || ||||||||||||||  |||||||
Sbjct: 37104 tttggtgctgctctcatgtatgatgaaacattcgactctttcaagtggctctttgagac 37162
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                          
Query: 441     tttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggcttcttgagac 499
               |||||||||||| || |||||||||||||    || ||||||||||||||  |||||||
Sbjct: 9091757 tttggtgctgctctcatgtatgatgaaacattcgactctttcaagtggctctttgagac 9091815



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 437     catatttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggct 490
               ||||||||||||||| || || ||||||||| | |  || ||||||||||||||
Sbjct: 4257059 catatttggtgctgccttgctttatgatgaatcagaagagtctttcaagtggct 4257112



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 293      taatgtcttttgggctgatgcaaga 317
                |||| ||||||||||||||||||||
Sbjct: 25382164 taatatcttttgggctgatgcaaga 25382188



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 457      tgtatgatgaaacggctgaatctttcaagtggcttcttgagaccttta 504
                |||||||||||||   ||| |||||||||||| |  ||||||||||||
Sbjct: 15487634 tgtatgatgaaacatttgagtctttcaagtggttgtttgagaccttta 15487681
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                          
Query: 441     tttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggcttcttgagac 499
               |||||||||||| || |||||||||||||    || ||||||||||||||  |||||||
Sbjct: 6298951 tttggtgctgctctcatgtatgatgaaacattcgactctttcaagtggctctttgagac 6298893
to top
>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0038J17
          Length = 180186

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                         
Query: 441    tttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggcttcttgagac 499
              |||||||||||| || |||||||||||||    || ||||||||||||||  |||||||
Sbjct: 161149 tttggtgctgctctcatgtatgatgaaacattcgactctttcaagtggctctttgagac 161091
to top
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0515G01
          Length = 175072

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 441   tttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggcttcttgagac 499
             |||||||||||| || |||||||||||||    || ||||||||||||||  |||||||
Sbjct: 70017 tttggtgctgctctcatgtatgatgaaacattcgactctttcaagtggctctttgagac 69959
to top
>ref|XM_470548.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2337

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 437  catatttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggct 490
            ||||||||||||||| || || ||||||||| | |  || ||||||||||||||
Sbjct: 1014 catatttggtgctgccttgctttatgatgaatcagaagagtctttcaagtggct 1067
to top
>emb|AL359253.17| Human DNA sequence from clone RP11-428L19 on chromosome 9 Contains the 5'
              end of the PCSK5 gene for proprotein convertase
              subtilisin/kexin type 5 and two CpG islands, complete
              sequence
          Length = 189608

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 116    tggaaatggaaatgccataagcattcctcc 145
              ||||||||||||||  ||||||||||||||
Sbjct: 168551 tggaaatggaaatggaataagcattcctcc 168580
to top
>emb|CR931734.2| Medicago truncatula chromosome 5 clone mth2-62m24, COMPLETE SEQUENCE
          Length = 88409

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 292   ctaatgtcttttgggctgatgcaagatcaa 321
             ||||||| |||||||| |||||||||||||
Sbjct: 43575 ctaatgtgttttgggcagatgcaagatcaa 43546
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 112      aatctggaaatggaaatgccat 133
                ||||||||||||||||||||||
Sbjct: 33749208 aatctggaaatggaaatgccat 33749229
to top
>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1249_F12
          Length = 133205

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 112    aatctggaaatggaaatgccat 133
              ||||||||||||||||||||||
Sbjct: 117615 aatctggaaatggaaatgccat 117636
to top
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 112   aatctggaaatggaaatgccat 133
             ||||||||||||||||||||||
Sbjct: 80075 aatctggaaatggaaatgccat 80096
to top
>dbj|AK101197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030K10, full
            insert sequence
          Length = 1881

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 437  catatttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggct 490
            ||||||||||||||| || || ||||||||| | |  || ||||||||||||||
Sbjct: 1511 catatttggtgctgccttgctttatgatgaatcagaagagtctttcaagtggct 1564
to top
>dbj|AK067807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120L22, full
            insert sequence
          Length = 3099

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 437  catatttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggct 490
            ||||||||||||||| || || ||||||||| | |  || ||||||||||||||
Sbjct: 1508 catatttggtgctgccttgctttatgatgaatcagaagagtctttcaagtggct 1561
to top
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0076N15, complete sequence
          Length = 134307

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 437   catatttggtgctgctttcctgtatgatgaaacggctgaatctttcaagtggct 490
             ||||||||||||||| || || ||||||||| | |  || ||||||||||||||
Sbjct: 85559 catatttggtgctgccttgctttatgatgaatcagaagagtctttcaagtggct 85612
to top
>ref|XM_469069.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2930

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 293 taatgtcttttgggctgatgcaaga 317
           |||| ||||||||||||||||||||
Sbjct: 156 taatatcttttgggctgatgcaaga 180
to top
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
              SNF2P genes, complete cds; nucellin pseudogene, complete
              sequence; putative transposase, phosphatidylinositol
              phosphatidylcholine transfer protein sec14 cytosolic-like
              protein, and phytochrome P450-like protein genes, complete
              cds; and unknown genes
          Length = 438828

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 441    tttggtgctgctttcctgtatgatgaaac 469
              |||||||||||| || |||||||||||||
Sbjct: 399808 tttggtgctgctctcatgtatgatgaaac 399836
to top
>gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete
             sequence
          Length = 130193

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 293   taatgtcttttgggctgatgcaaga 317
             |||| ||||||||||||||||||||
Sbjct: 11853 taatatcttttgggctgatgcaaga 11829
to top
>gb|AC133167.3| Mus musculus BAC clone RP24-211H4 from chromosome 18, complete sequence
          Length = 159356

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    agagtgataatccatcttttt 255
              |||||||||||||||||||||
Sbjct: 104272 agagtgataatccatcttttt 104252
to top
>gb|AC131787.3| Mus musculus BAC clone RP24-397K14 from chromosome 18, complete
             sequence
          Length = 159775

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   caaggtacaagaattatcttc 165
             |||||||||||||||||||||
Sbjct: 76833 caaggtacaagaattatcttc 76853
to top
>gb|DQ127630.1| Emiliania huxleyi virus 163 clone new249.seq partial sequence
          Length = 1275

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 28  aatttgtgcaggatcataatcacca 52
           |||||| ||||||||||||||||||
Sbjct: 637 aatttgagcaggatcataatcacca 613
to top
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete
              sequence
          Length = 152828

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 293    taatgtcttttgggctgatgcaaga 317
              |||| ||||||||||||||||||||
Sbjct: 152505 taatatcttttgggctgatgcaaga 152481
to top
>gb|AC183492.1| Brassica oleracea Contig G, complete sequence
          Length = 236640

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 459   tatgatgaaacggctgaatctttcaagtggcttcttgagac 499
             |||||||||||  |||| ||||| ||||||||| |||||||
Sbjct: 71247 tatgatgaaaccactgagtcttttaagtggctttttgagac 71207
to top
>dbj|AK120778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009J07, full
            insert sequence
          Length = 4121

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 293  taatgtcttttgggctgatgcaaga 317
            |||| ||||||||||||||||||||
Sbjct: 1258 taatatcttttgggctgatgcaaga 1282
to top
>dbj|AK120058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C08, full
            insert sequence
          Length = 3734

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 293  taatgtcttttgggctgatgcaaga 317
            |||| ||||||||||||||||||||
Sbjct: 1110 taatatcttttgggctgatgcaaga 1134
to top
>gb|AC120429.6| Mus musculus chromosome 18, clone RP24-546J19, complete sequence
          Length = 147268

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 145   caaggtacaagaattatcttc 165
             |||||||||||||||||||||
Sbjct: 30316 caaggtacaagaattatcttc 30296
to top
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86
          Length = 407339

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 28     aatttgtgcaggatcataatcacca 52
              |||||| ||||||||||||||||||
Sbjct: 326356 aatttgagcaggatcataatcacca 326332
to top
>gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, complete sequence
          Length = 227785

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    agagtgataatccatcttttt 255
              |||||||||||||||||||||
Sbjct: 202073 agagtgataatccatcttttt 202053
to top
>dbj|AB007468.1| Xenopus laevis mRNA for alpha-2,8-polysialyltransferase, complete cds
          Length = 1950

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 99   ttgtccaaggttcaatctggaaatg 123
            |||||||||||| ||||||||||||
Sbjct: 1521 ttgtccaaggttaaatctggaaatg 1545
to top
>ref|NM_118441.1| Arabidopsis thaliana DNA binding AT4G23120 mRNA, complete cds
          Length = 1083

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  atcataatcaccagcttgct 59
           ||||||||||||||||||||
Sbjct: 846 atcataatcaccagcttgct 827
to top
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence,
            complete sequence
          Length = 164705

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 457  tgtatgatgaaacggctgaatctttcaagtggcttcttgagaccttta 504
            |||||||||||||   ||| |||||||||||| |  ||||||||||||
Sbjct: 8426 tgtatgatgaaacatttgagtctttcaagtggttgtttgagaccttta 8379
to top
>gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete sequence
          Length = 131025

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 294   aatgtcttttgggctgatgcaaga 317
             ||||| ||||||||||||||||||
Sbjct: 49027 aatgtgttttgggctgatgcaaga 49050
to top
>gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete sequence
          Length = 134901

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 294    aatgtcttttgggctgatgcaaga 317
              ||||| ||||||||||||||||||
Sbjct: 108872 aatgtgttttgggctgatgcaaga 108849
to top
>emb|AL450425.13| Human DNA sequence from clone RP11-219C11 on chromosome 13 Contains a
             heterogeneous nuclear ribonucleoprotein A2/B1 (HNRPA2B1)
             pseudogene, complete sequence
          Length = 141980

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   acagcccaagacaattttga 543
             ||||||||||||||||||||
Sbjct: 12447 acagcccaagacaattttga 12428
to top
>emb|AL365499.19| Human DNA sequence from clone RP11-227E22 on chromosome 6, complete
             sequence
          Length = 84972

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   ttaagagtgccatgtgtggg 521
             ||||||||||||||||||||
Sbjct: 33307 ttaagagtgccatgtgtggg 33326
to top
>emb|AL138930.15| Human DNA sequence from clone RP11-528G1 on chromosome 1 Contains the
             SLAMF6 gene for SLAM family member 6, the CD84 gene for
             CD84 antigen (leukocyte antigen), a novel gene and the 3'
             end of the SLAMF1 gene for signaling lymphocytic
             activation molecule family member 1, complete sequence
          Length = 175386

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   ccactagctttgtttttggg 412
             ||||||||||||||||||||
Sbjct: 21678 ccactagctttgtttttggg 21697
to top
>emb|AL133335.29| Human DNA sequence from clone RP5-1162C3 on chromosome 20 Contains the
             PFDN4 gene for prefoldin 4 and two CpG islands, complete
             sequence
          Length = 101961

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   tagctttgtttttgggtatg 416
             ||||||||||||||||||||
Sbjct: 79743 tagctttgtttttgggtatg 79762
to top
>gb|AC023049.14| Homo sapiens 3 BAC RP11-468F18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 117951

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   gctttcctgtatgatgaaac 469
             ||||||||||||||||||||
Sbjct: 10218 gctttcctgtatgatgaaac 10237
to top
>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 267509

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    caaagattattgtccaaggt 109
             ||||||||||||||||||||
Sbjct: 98688 caaagattattgtccaaggt 98707
to top
>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58
          Length = 193550

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     atcataatcaccagcttgct 59
              ||||||||||||||||||||
Sbjct: 156814 atcataatcaccagcttgct 156795
to top
>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project)
          Length = 139316

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     atcataatcaccagcttgct 59
              ||||||||||||||||||||
Sbjct: 127726 atcataatcaccagcttgct 127707
to top
>emb|AL022347.1|ATF21P8 Arabidopsis thaliana DNA chromosome 4, BAC clone F21P8 (ESSA project)
          Length = 85785

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 40   atcataatcaccagcttgct 59
            ||||||||||||||||||||
Sbjct: 2618 atcataatcaccagcttgct 2599
to top
>dbj|AB240683.1| Leptospira interrogans serovar Manilae lipL45 mRNA for lipoprotein
           LipL45, complete cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 ttcaatctggaaatggaaat 128
           ||||||||||||||||||||
Sbjct: 125 ttcaatctggaaatggaaat 144
to top
>dbj|AB240682.1| Leptospira interrogans serovar Icterohaemorrhagiae lipL45 mRNA for
           lipoprotein LipL45, complete cds
          Length = 1044

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 ttcaatctggaaatggaaat 128
           ||||||||||||||||||||
Sbjct: 125 ttcaatctggaaatggaaat 144
to top
>gb|AC092365.3| Homo sapiens chromosome 16 clone RP11-450B4, complete sequence
          Length = 181329

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   gaaacagcccaagacaattt 540
             ||||||||||||||||||||
Sbjct: 42485 gaaacagcccaagacaattt 42466
to top
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 109     ttcaatctggaaatggaaat 128
               ||||||||||||||||||||
Sbjct: 4245015 ttcaatctggaaatggaaat 4244996
to top
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 109     ttcaatctggaaatggaaat 128
               ||||||||||||||||||||
Sbjct: 4188749 ttcaatctggaaatggaaat 4188730
to top
>emb|CT485992.1| S.lycopersicum DNA sequence from clone LE_HBa-31H5 on chromosome 4,
              complete sequence
          Length = 164164

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    tctttttactatgccatcca 268
              ||||||||||||||||||||
Sbjct: 112735 tctttttactatgccatcca 112716
to top
>gb|AF037073.1|AF037073 Xenopus laevis Rho-associated kinase alpha mRNA, complete cds
          Length = 4308

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  gatatgacctacaaactgaa 379
            ||||||||||||||||||||
Sbjct: 2182 gatatgacctacaaactgaa 2201


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,413,584
Number of Sequences: 3902068
Number of extensions: 5413584
Number of successful extensions: 119678
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119155
Number of HSP's gapped (non-prelim): 517
length of query: 598
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 575
effective length of database: 17,143,297,704
effective search space: 9857396179800
effective search space used: 9857396179800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top