>ref|NM_194876.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein
           (OSJNBa0028C16.8), mRNA
          Length = 1419

 Score =  113 bits (57), Expect = 1e-22
 Identities = 107/124 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaatgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaagggg 60
           |||||||||||||| |||||||||||||| |||||||  | ||||||| | |||||||| 
Sbjct: 580 ggcaatgtacccaaggggttgagtgaggacgagctgagaaacataatccaggggaagggc 639

                                                                       
Query: 61  ccaggtgtcgncaatattgagatgtttaaggatttgcataacccaagccgtaatcgtggg 120
           |||||||| |  || ||||||||||| |||||||| ||| | ||||||||||| ||||||
Sbjct: 640 ccaggtgttgtgaacattgagatgttcaaggatttacatgatccaagccgtaaccgtggg 699

               
Query: 121 ttcc 124
           ||||
Sbjct: 700 ttcc 703

>dbj|AK066347.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065B13, full
           insert sequence
          Length = 3637

 Score =  113 bits (57), Expect = 1e-22
 Identities = 107/124 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaatgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaagggg 60
           |||||||||||||| |||||||||||||| |||||||  | ||||||| | |||||||| 
Sbjct: 845 ggcaatgtacccaaggggttgagtgaggacgagctgagaaacataatccaggggaagggc 904

                                                                       
Query: 61  ccaggtgtcgncaatattgagatgtttaaggatttgcataacccaagccgtaatcgtggg 120
           |||||||| |  || ||||||||||| |||||||| ||| | ||||||||||| ||||||
Sbjct: 905 ccaggtgttgtgaacattgagatgttcaaggatttacatgatccaagccgtaaccgtggg 964

               
Query: 121 ttcc 124
           ||||
Sbjct: 965 ttcc 968

>gb|AC146948.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0782F03 map
              near S2137, complete sequence
          Length = 197516

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                          
Query: 4      aatgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggcca 63
              ||||||||||| |||||| |||||||||||||||  |  |||||| ||||||||||||||
Sbjct: 104439 aatgtacccaaggggttgggtgaggaggagctgagaaagataatccaagggaaggggcca 104380

                                          
Query: 64     ggtgtcgncaatattgagatgtttaagg 91
              ||||| | ||| ||||||||||| ||||
Sbjct: 104379 ggtgttgtcaacattgagatgttcaagg 104352



 Score = 48.1 bits (24), Expect = 0.006
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 89     aggatttgcataacccaagccgtaatcgtgggttcc 124
              ||||||| ||| ||||||||||||| ||||||||||
Sbjct: 104272 aggatttacatgacccaagccgtaaccgtgggttcc 104237

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                           
Query: 4       aatgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggcca 63
               ||||||||||| |||||| |||||||||||||||  |  |||||| ||||||||||||||
Sbjct: 8023711 aatgtacccaaggggttgggtgaggaggagctgagaaagataatccaagggaaggggcca 8023652

                                           
Query: 64      ggtgtcgncaatattgagatgtttaagg 91
               ||||| | ||| ||||||||||| ||||
Sbjct: 8023651 ggtgttgtcaacattgagatgttcaagg 8023624



 Score = 48.1 bits (24), Expect = 0.006
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 89      aggatttgcataacccaagccgtaatcgtgggttcc 124
               ||||||| ||| ||||||||||||| ||||||||||
Sbjct: 8023544 aggatttacatgacccaagccgtaaccgtgggttcc 8023509

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 77/88 (87%)
 Strand = Plus / Minus

                                                                           
Query: 4       aatgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggcca 63
               ||||||||||| |||||| |||||||||||||||  |  |||||| ||||||||||||||
Sbjct: 8093650 aatgtacccaaggggttgggtgaggaggagctgagaaagataatccaagggaaggggcca 8093591

                                           
Query: 64      ggtgtcgncaatattgagatgtttaagg 91
               ||||| | ||| ||||||||||| ||||
Sbjct: 8093590 ggtgttgtcaacattgagatgttcaagg 8093563



 Score = 48.1 bits (24), Expect = 0.006
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 89      aggatttgcataacccaagccgtaatcgtgggttcc 124
               ||||||| ||| ||||||||||||| ||||||||||
Sbjct: 8093483 aggatttacatgacccaagccgtaaccgtgggttcc 8093448

>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence
          Length = 166757

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                         
Query: 1     ggcaatgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaagggg 60
             |||||||||||||| |||||||||||||| |||||||  | ||||||| | |||||||| 
Sbjct: 66337 ggcaatgtacccaaggggttgagtgaggacgagctgagaaacataatccaggggaagggc 66278

                                            
Query: 61    ccaggtgtcgncaatattgagatgtttaagg 91
             |||||||| |  || ||||||||||| ||||
Sbjct: 66277 ccaggtgttgtgaacattgagatgttcaagg 66247



 Score = 40.1 bits (20), Expect = 1.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 89    aggatttgcataacccaagccgtaatcgtgggttcc 124
             ||||||| ||| | ||||||||||| ||||||||||
Sbjct: 66168 aggatttacatgatccaagccgtaaccgtgggttcc 66133

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                           
Query: 1       ggcaatgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaagggg 60
               |||||||||||||| |||||||||||||| |||||||  | ||||||| | |||||||| 
Sbjct: 3096705 ggcaatgtacccaaggggttgagtgaggacgagctgagaaacataatccaggggaagggc 3096646

                                              
Query: 61      ccaggtgtcgncaatattgagatgtttaagg 91
               |||||||| |  || ||||||||||| ||||
Sbjct: 3096645 ccaggtgttgtgaacattgagatgttcaagg 3096615



 Score = 40.1 bits (20), Expect = 1.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 89      aggatttgcataacccaagccgtaatcgtgggttcc 124
               ||||||| ||| | ||||||||||| ||||||||||
Sbjct: 3096536 aggatttacatgatccaagccgtaaccgtgggttcc 3096501

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                           
Query: 1       ggcaatgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaagggg 60
               |||||||||||||| |||||||||||||| |||||||  | ||||||| | |||||||| 
Sbjct: 3096626 ggcaatgtacccaaggggttgagtgaggacgagctgagaaacataatccaggggaagggc 3096567

                                              
Query: 61      ccaggtgtcgncaatattgagatgtttaagg 91
               |||||||| |  || ||||||||||| ||||
Sbjct: 3096566 ccaggtgttgtgaacattgagatgttcaagg 3096536



 Score = 40.1 bits (20), Expect = 1.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 89      aggatttgcataacccaagccgtaatcgtgggttcc 124
               ||||||| ||| | ||||||||||| ||||||||||
Sbjct: 3096457 aggatttacatgatccaagccgtaaccgtgggttcc 3096422

>gb|AY104865.1| Zea mays PCO099871 mRNA sequence
          Length = 1968

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 100/121 (82%)
 Strand = Plus / Plus

                                                                       
Query: 4   aatgtacccaaagggttgagtgaggaggagctgacgagcataatcaaagggaaggggcca 63
           ||||| ||||| ||| |||| ||||||||||| || | ||  ||||| |||||||| |||
Sbjct: 801 aatgtgcccaaggggctgagcgaggaggagcttaccaacactatcaaggggaagggtcca 860

                                                                       
Query: 64  ggtgtcgncaatattgagatgtttaaggatttgcataacccaagccgtaatcgtgggttc 123
           |||||   ||| ||||||||||||||||||  |||| |||||| |||||| ||||| |||
Sbjct: 861 ggtgttatcaacattgagatgtttaaggatcagcatgacccaaaccgtaaccgtggcttc 920

            
Query: 124 c 124
           |
Sbjct: 921 c 921

>gb|BT018606.1| Zea mays clone EL01N0450E05.d mRNA sequence
          Length = 1806

 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                       
Query: 46  atcaaagggaaggggccaggtgtcgncaatattgagatgtttaaggatttgcataaccca 105
           ||||| |||||||| ||||||||   ||| ||||||||||||| ||||  |||| |||||
Sbjct: 682 atcaaggggaagggtccaggtgttatcaacattgagatgtttagggatcagcatgaccca 741

                              
Query: 106 agccgtaatcgtgggttcc 124
           | |||||| ||||| ||||
Sbjct: 742 aaccgtaaccgtggcttcc 760

>gb|AC175380.2| Mus musculus BAC clone RP24-333L5 from chromosome 13, complete sequence
          Length = 164055

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    aatattgagatgtttaaggatttg 96
             ||||||||||| ||||||||||||
Sbjct: 73960 aatattgagatatttaaggatttg 73983

>gb|AC121108.12| Mus musculus chromosome 3, clone RP24-417H10, complete sequence
          Length = 184753

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    tgaggaggagctgacgagca 43
             ||||||||||||||||||||
Sbjct: 96823 tgaggaggagctgacgagca 96842

>gb|AC126403.7| Mus musculus chromosome 15, clone RP24-483E7, complete sequence
          Length = 152384

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 42     cataatcaaagggaagggg 60
              |||||||||||||||||||
Sbjct: 116150 cataatcaaagggaagggg 116132

>gb|AC161111.2| Mus musculus chromosome 15, clone RP23-50B6, complete sequence
          Length = 200074

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    cataatcaaagggaagggg 60
             |||||||||||||||||||
Sbjct: 56604 cataatcaaagggaagggg 56586

>gb|AC025219.6| Homo sapiens chromosome 15, clone RP11-276M12, complete sequence
          Length = 144244

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ttgagatgtttaaggattt 95
            |||||||||||||||||||
Sbjct: 2339 ttgagatgtttaaggattt 2321

>ref|XM_804784.1| Trypanosoma cruzi strain CL Brener trans-splicing factor
           (Tc00.1047053504625.10) partial mRNA
          Length = 1065

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 18  gttgagtgaggaggagctg 36
           |||||||||||||||||||
Sbjct: 534 gttgagtgaggaggagctg 552

>ref|XM_854212.1| PREDICTED: Canis familiaris similar to dynactin 2, transcript
           variant 9 (LOC474415), mRNA
          Length = 1674

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 25  gaggaggagctgacgagca 43
           |||||||||||||||||||
Sbjct: 200 gaggaggagctgacgagca 218

>gb|AC009022.10| Homo sapiens chromosome 16 clone RP11-106J23, complete sequence
          Length = 190577

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    agatgtttaaggatttgca 98
             |||||||||||||||||||
Sbjct: 63221 agatgtttaaggatttgca 63203

>gb|U13876.3| Caenorhabditis elegans cosmid F57B9, complete sequence
          Length = 39112

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 15   agggttgagtgaggaggag 33
            |||||||||||||||||||
Sbjct: 4826 agggttgagtgaggaggag 4844

>emb|BX323088.13| Zebrafish DNA sequence from clone DKEY-112M2 in linkage group 21,
             complete sequence
          Length = 248571

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 82    atgtttaaggatttgcataaccc 104
             |||||||||||||| ||||||||
Sbjct: 33407 atgtttaaggattttcataaccc 33429

>emb|BX936356.18| Zebrafish DNA sequence from clone DKEY-57P14 in linkage group 21,
              complete sequence
          Length = 243377

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 82     atgtttaaggatttgcataaccc 104
              |||||||||||||| ||||||||
Sbjct: 183279 atgtttaaggattttcataaccc 183301



 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 82     atgtttaaggatttgcataaccc 104
              |||||||||||||| ||||||||
Sbjct: 182403 atgtttaaggattttcataaccc 182381

>gb|AC008449.6| Homo sapiens chromosome 5 clone CTC-341A9, complete sequence
          Length = 124405

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     tacccaaagggttgagtga 26
             |||||||||||||||||||
Sbjct: 50222 tacccaaagggttgagtga 50240

>gb|AC149204.1| Medicago truncatula chromosome 7 BAC clone mth2-77n20, complete
             sequence
          Length = 75741

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 81    gatgtttaaggatttgcataacc 103
             |||||||||||||||| ||||||
Sbjct: 66999 gatgtttaaggatttgtataacc 66977

>gb|AC026956.20| Homo sapiens chromosome 15, clone RP11-597K23, complete sequence
          Length = 215520

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    ttgagatgtttaaggattt 95
             |||||||||||||||||||
Sbjct: 31442 ttgagatgtttaaggattt 31460


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 902,861
Number of Sequences: 3902068
Number of extensions: 902861
Number of successful extensions: 74376
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74180
Number of HSP's gapped (non-prelim): 196
length of query: 124
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 103
effective length of database: 17,151,101,840
effective search space: 1766563489520
effective search space used: 1766563489520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)