Clone Information

BLAST Search Result

Clone Name	bags25p07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CUL1_ARATH (Q94AH6) Cullin-1	238	9e-63
2	CUL3_SCHPO (Q09760) Cullin-3 (Cul-3)	104	1e-22
3	CUL4B_HUMAN (Q13620) Cullin-4B (CUL-4B)	99	8e-21
4	CUL4A_HUMAN (Q13619) Cullin-4A (CUL-4A)	96	5e-20
5	CUL4_SCHPO (O14122) Cullin-4 (Cul-4)	91	2e-18
6	CUL3_MOUSE (Q9JLV5) Cullin-3 (CUL-3)	90	3e-18
7	CUL3_HUMAN (Q13618) Cullin-3 (CUL-3)	90	4e-18
8	CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)	79	9e-15
9	CUL2_MOUSE (Q9D4H8) Cullin-2 (CUL-2)	79	9e-15
10	CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)	79	9e-15
11	CUL1_SCHPO (O13790) Cullin-1 (Cul-1) (Cell division control 53 h...	69	5e-12
12	CUL3_CAEEL (Q17391) Cullin-3	69	5e-12
13	CUL4_CAEEL (Q17392) Cullin-4	69	9e-12
14	CUL1_DROME (Q24311) Cullin homolog 1 (Lin-19 homolog protein)	65	8e-11
15	CUL1_PONPY (Q5R4G6) Cullin-1 (CUL-1)	64	2e-10
16	CUL1_MOUSE (Q9WTX6) Cullin-1 (CUL-1)	64	2e-10
17	CUL1_HUMAN (Q13616) Cullin-1 (CUL-1)	64	2e-10
18	CUL1_CAEEL (Q17389) Cullin-1 (Abnormal cell lineage protein 19)	59	5e-09
19	CUL6_CAEEL (Q21346) Cullin-6	57	3e-08
20	CUL2_CAEEL (Q17390) Cullin-2	54	2e-07
21	CUL3_YEAST (P53202) Cullin-3 (Cullin-B)	54	3e-07
22	CUL5_PONPY (Q5RB36) Cullin-5 (CUL-5)	44	2e-04
23	CUL5_HUMAN (Q93034) Cullin-5 (CUL-5) (Vasopressin-activated calc...	44	2e-04
24	CUL5_RAT (Q9JJ31) Cullin-5 (CUL-5) (Vasopressin-activated calciu...	43	4e-04
25	CUL5_MOUSE (Q9D5V5) Cullin-5 (CUL-5)	43	4e-04
26	CDC53_YEAST (Q12018) Cell division control protein 53 (Cullin-A)...	41	0.002
27	CUL5_RABIT (Q29425) Cullin-5 (CUL-5) (Vasopressin-activated calc...	40	0.003
28	Y051_MYCPN (P75063) Hypothetical protein MG039 homolog (D09_orf384)	30	2.7
29	YON1_SCHPO (Q9Y824) Hypothetical protein C1105.01 in chromosome II	24	5.6
30	HTRA3_HUMAN (P83110) Probable serine protease HTRA3 precursor (E...	29	7.8
31	BSN1_BACSU (Q03091) Extracellular ribonuclease precursor (EC 3.1...	29	7.8
32	RB_RAT (P33568) Retinoblastoma-associated protein (PP105) (RB) (...	29	7.8

>CUL1_ARATH (Q94AH6) Cullin-1|
          Length = 738

 Score =  238 bits (606), Expect = 9e-63
 Identities = 120/163 (73%), Positives = 135/163 (82%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            LTWIYSLGTC+I+ KFD K IELIV+TYQAA+LLLFN + KLSY+EI+ QLNLS +D+VR
Sbjct: 548  LTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVR 607

Query: 183  LLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXXXXXXXXX 362
            LLHSLSCAKYKIL KEP  +T+S ND+FEFNSKFTDRMRRIKIPLPP             
Sbjct: 608  LLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDERKKVVEDVDK 667

Query: 363  XRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKPDFKA 491
             RRYAIDA+IVRIMKSRKV+ H QLV+ECVEQLSRMFKPD KA
Sbjct: 668  DRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKA 710

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>CUL3_SCHPO (Q09760) Cullin-3 (Cul-3)|
          Length = 785

 Score =  104 bits (260), Expect = 1e-22
 Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTK---LSYSEIVTQLNLSDDD 173
            L W  S+G+ ++   F  +  +L V+T  + +LLLF    +   L + EI+ + N+   D
Sbjct: 586  LLWYPSMGSADVRVNFKDRKYDLNVSTIASVILLLFQDLKENQCLIFEEILEKTNIEVGD 645

Query: 174  VVRLLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIP------LPPXXXX 335
            + R L SL+CAKYKIL K+P GR ++  D F FN  F   + RIKI       +      
Sbjct: 646  LKRNLQSLACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSER 705

Query: 336  XXXXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                      R++  DA IVR+MK RKV  H QL+AE   QL+  F P
Sbjct: 706  KRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHP 753

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>CUL4B_HUMAN (Q13620) Cullin-4B (CUL-4B)|
          Length = 895

 Score = 98.6 bits (244), Expect = 8e-21
 Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            L W  +LG C + A+F     EL V+ +Q  +LL+FN   + S  EI     + D ++ R
Sbjct: 703  LQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRR 762

Query: 183  LLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKI----PLPPXXXXXXXXX 350
             L SL+C K ++L+K P G+ I   D F  N  F  ++ RIKI                 
Sbjct: 763  TLQSLACGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTE 822

Query: 351  XXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                 R+Y IDA+IVRIMK RK ++H  LV+E   QL    KP
Sbjct: 823  RVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP 865

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>CUL4A_HUMAN (Q13619) Cullin-4A (CUL-4A)|
          Length = 659

 Score = 95.9 bits (237), Expect = 5e-20
 Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
 Frame = +3

Query: 3   LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
           L W  +LG   + A+F     E  V+ +Q  +LL+FN     S+ EI     + D ++ R
Sbjct: 467 LQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRR 526

Query: 183 LLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKI----PLPPXXXXXXXXX 350
            L SL+C K ++L K P G+ +   D F FN +F  ++ RIKI                 
Sbjct: 527 TLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTE 586

Query: 351 XXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                R+Y IDA+IVRIMK RK + H  LV+E   QL    KP
Sbjct: 587 RVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKP 629

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>CUL4_SCHPO (O14122) Cullin-4 (Cul-4)|
          Length = 734

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
 Frame = +3

Query: 3   LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFN---GSTKLSYSEIVTQLNLSDDD 173
           ++W  SLG C + A+F     EL ++ +QA +LL FN   G   +SY ++     LSD D
Sbjct: 539 ISWYASLGHCIVKARFPLGNKELSISLFQACVLLQFNNCLGGEGISYQDLKKSTELSDID 598

Query: 174 VVRLLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIP----LPPXXXXXX 341
           + R L SLSCA+ + L   P  +  SP+  F  N KFTD++ R+KI              
Sbjct: 599 LTRTLQSLSCARIRPLVMVPKSKKPSPDTMFYVNEKFTDKLYRVKINQIYLKEERQENSD 658

Query: 342 XXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLV 440
                   R++ + ASIVR+MK ++ M H  LV
Sbjct: 659 VQEQVVRDRQFELQASIVRVMKQKEKMKHDDLV 691

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>CUL3_MOUSE (Q9JLV5) Cullin-3 (CUL-3)|
          Length = 768

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
 Frame = +3

Query: 69   LIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVRLLHSLSCAK--YKILSKEPAGR 242
            L V+T+Q  +L+LFN   K ++ EI  + ++ + ++VR L SL+C K   ++L+KEP  +
Sbjct: 592  LQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSK 651

Query: 243  TISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXX------XXXXXXXXRRYAIDASIVRIM 404
             I     F  N +FT ++ R+KI                        R++ I+A+IVRIM
Sbjct: 652  EIESGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIM 711

Query: 405  KSRKVMAHTQLVAECVEQLSRMFKP 479
            KSRK M H  LVAE  +QL   F P
Sbjct: 712  KSRKKMQHNVLVAEVTQQLKARFLP 736

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>CUL3_HUMAN (Q13618) Cullin-3 (CUL-3)|
          Length = 768

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
 Frame = +3

Query: 69   LIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVRLLHSLSCAK--YKILSKEPAGR 242
            L V+T+Q  +L+LFN   K ++ EI  + ++ + ++VR L SL+C K   ++L+KEP  +
Sbjct: 592  LQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSK 651

Query: 243  TISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXX------XXXXXXXXRRYAIDASIVRIM 404
             I     F  N +FT ++ R+KI                        R++ I+A+IVRIM
Sbjct: 652  EIENGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIM 711

Query: 405  KSRKVMAHTQLVAECVEQLSRMFKP 479
            KSRK M H  LVAE  +QL   F P
Sbjct: 712  KSRKKMQHNVLVAEVTQQLKARFLP 736

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>CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)|
          Length = 745

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            LTW++ L T  +   +  K    +VTTYQ A+LL FN S  +SY E+     +++ ++ +
Sbjct: 553  LTWLHYLCTGEVKMNYLGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTK 612

Query: 183  LLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIPLPPXXXX----XXXXX 350
             + SL     K+++ +     I    SF  N  F+ +  + KI                 
Sbjct: 613  TIKSL--LDVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRS 670

Query: 351  XXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                 R+  + A+IVRIMK+RKV+ H  L+ E + Q    F P
Sbjct: 671  AVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNP 713

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>CUL2_MOUSE (Q9D4H8) Cullin-2 (CUL-2)|
          Length = 745

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            LTW++ L T  +   +  K    +VTTYQ A+LL FN S  +SY E+     +++ ++ +
Sbjct: 553  LTWLHYLCTGEVKMNYLGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTK 612

Query: 183  LLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIPLPPXXXX----XXXXX 350
             + SL     K+++ +     I    SF  N  F+ +  + KI                 
Sbjct: 613  TIKSL--LDVKMINHDSEKEDIDAESSFSLNMSFSSKRTKFKITTSMQKDTPQELEQTRS 670

Query: 351  XXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                 R+  + A+IVRIMK+RKV+ H  L+ E + Q    F P
Sbjct: 671  AVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNP 713

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>CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)|
          Length = 745

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            LTW++ L T  +   +  K    +VTTYQ A+LL FN S  +SY E+     +++ ++ +
Sbjct: 553  LTWLHYLCTGEVKMNYLGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTK 612

Query: 183  LLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIPLPPXXXX----XXXXX 350
             + SL     K+++ +     I    SF  N  F+ +  + KI                 
Sbjct: 613  TIKSL--LDVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRS 670

Query: 351  XXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                 R+  + A+IVRIMK+RKV+ H  L+ E + Q    F P
Sbjct: 671  AVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNP 713

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>CUL1_SCHPO (O13790) Cullin-1 (Cul-1) (Cell division control 53 homolog)|
          Length = 767

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKT---IELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDD 173
            L+W++ L    I A+ + +T       V+TYQ  +LLL+N     +Y E+     LS D 
Sbjct: 574  LSWLFHLSKGEIKARINPQTNVTYVFQVSTYQMGVLLLYNHRDSYTYEELAKITGLSTDF 633

Query: 174  VVRLLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIPLP----PXXXXXX 341
            +  +L+    AK  +L      +   PN +++ N  F  +  R+++ LP           
Sbjct: 634  LTGILNIFLKAKVLLLGDND--KLGDPNSTYKINENFRMKKIRVQLNLPIRSEQKQESLE 691

Query: 342  XXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                    R+  + ++IVRIMK+R+ + H  LV E ++Q+   F P
Sbjct: 692  THKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTP 737

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>CUL3_CAEEL (Q17391) Cullin-3|
          Length = 777

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 8/145 (5%)
 Frame = +3

Query: 69   LIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVRLLHSLSCAK--YKILSKEPAGR 242
            L V T+Q  +LL FN   ++S  +++ +L + + ++ R L SL+  K   +IL ++  G+
Sbjct: 601  LQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRNLQSLALGKASQRILVRKNKGK 660

Query: 243  -TISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXX-----XXXXXXXXRRYAIDASIVRIM 404
              I  +D F  N  F  ++ R+K+ +                     R+  ++A+IVRIM
Sbjct: 661  DAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIM 720

Query: 405  KSRKVMAHTQLVAECVEQLSRMFKP 479
            K+RK + H  LVAE  +QL   F P
Sbjct: 721  KARKKLNHNNLVAEVTQQLRHRFMP 745

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>CUL4_CAEEL (Q17392) Cullin-4|
          Length = 840

 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 15/166 (9%)
 Frame = +3

Query: 9    WIYSLGTCNISAKF-DAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVRL 185
            W + L +  ISA F      ELI T YQ  +LLLFN     + +EIV    + + +VV+ 
Sbjct: 639  WHHGLASAVISASFRPGCKKELIATMYQTVILLLFNKCETWTVAEIVEHTKILEIEVVKN 698

Query: 186  LHSLSCA--KYKILSKEPAGRTISP--------NDSFEFNSKFTDRMRRIKIPLPPXXXX 335
            + +L     K K+L +   G +           N+ F  NSKFT++  R++I        
Sbjct: 699  VLALLGGRDKPKVLQRVEGGGSEKKEGTVENLKNEKFVVNSKFTEKRCRVRIAQVNIKTA 758

Query: 336  XXXXXXXX----XXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQL 461
                          R+Y IDA++VRIMK+RK + H  L+ E ++QL
Sbjct: 759  VEETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTLMTELLQQL 804

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>CUL1_DROME (Q24311) Cullin homolog 1 (Lin-19 homolog protein)|
          Length = 774

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 44/166 (26%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFD---AKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDD 173
            L W+Y +    +    +   + T  L  +T+Q ++LL FN     +  ++        ++
Sbjct: 579  LNWLYQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQEN 638

Query: 174  VVRLLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXXXXXX 353
            ++++L  L   K K+L+      +++P  + E    + ++ RRI I  P           
Sbjct: 639  LIQVLQIL--LKAKVLTSSDNENSLTPESTVELFLDYKNKKRRININQPLKTELKVEQET 696

Query: 354  XXXX----RRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                    R+  I A+IVRIMK RK + HT L++E + QLS  FKP
Sbjct: 697  VHKHIEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKP 742

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>CUL1_PONPY (Q5R4G6) Cullin-1 (CUL-1)|
          Length = 776

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 7/166 (4%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            LTW+Y L    +          L  +T+Q A+LL +N     +  ++     +  D + +
Sbjct: 579  LTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQ 638

Query: 183  LLHSLSCAKYKILSKEPAGRT---ISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXXXXXX 353
            +L  L  +K  +L  E A      + P+   +    + ++  R+ I +P           
Sbjct: 639  VLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQET 698

Query: 354  XXXX----RRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                    R+  I A+IVRIMK RKV+ H QL+ E + QLS  FKP
Sbjct: 699  THKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKP 744

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>CUL1_MOUSE (Q9WTX6) Cullin-1 (CUL-1)|
          Length = 776

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 7/166 (4%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            LTW+Y L    +          L  +T+Q A+LL +N     +  ++     +  D + +
Sbjct: 579  LTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQ 638

Query: 183  LLHSLSCAKYKILSKEPAGRT---ISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXXXXXX 353
            +L  L  +K  +L  E A      + P+   +    + ++  R+ I +P           
Sbjct: 639  VLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQET 698

Query: 354  XXXX----RRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                    R+  I A+IVRIMK RKV+ H QL+ E + QLS  FKP
Sbjct: 699  THKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKP 744

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>CUL1_HUMAN (Q13616) Cullin-1 (CUL-1)|
          Length = 776

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 7/166 (4%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            LTW+Y L    +          L  +T+Q A+LL +N     +  ++     +  D + +
Sbjct: 579  LTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQ 638

Query: 183  LLHSLSCAKYKILSKEPAGRT---ISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXXXXXX 353
            +L  L  +K  +L  E A      + P+   +    + ++  R+ I +P           
Sbjct: 639  VLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQET 698

Query: 354  XXXX----RRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                    R+  I A+IVRIMK RKV+ H QL+ E + QLS  FKP
Sbjct: 699  THKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKP 744

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>CUL1_CAEEL (Q17389) Cullin-1 (Abnormal cell lineage protein 19)|
          Length = 780

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 7/166 (4%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDD--- 173
            LTW+YS     I++    K      TT Q   +LLFN     +  +I     + +     
Sbjct: 584  LTWVYSQSRGEITSTAFPKKYVFTATTAQMCTMLLFNEQDSYTVEQIAAATKMDEKSAPA 643

Query: 174  -VVRLLHSLSCAKYKILSKE---PAGRTISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXX 341
             V  L+ +L       L KE   P   T+S N ++  N K    + +  +          
Sbjct: 644  IVGSLIKNLVLKADTELQKEDEVPMTATVSLNKAY-MNKKVRVDLSKFTMKQDAVRDTEN 702

Query: 342  XXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKP 479
                    R+  I A IVRIMK+RK + H QL+ E + QLS  FKP
Sbjct: 703  VQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSGRFKP 748

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>CUL6_CAEEL (Q21346) Cullin-6|
          Length = 729

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 7/167 (4%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            L W YS     +++K   K    IVT  Q   L LFN     +  +I   + ++      
Sbjct: 532  LNWAYSQCRGEVNSKAFEKKYVFIVTASQLCTLYLFNEQDSFTIEQISKAIEMTAKSTSA 591

Query: 183  LLHSLSCAKYKILSKEPAGRT--ISPNDSFEFNSKFTDRMRRIKIPLPPXXXXXXXXXXX 356
            ++ SL+     +L  +         P+     N+K+ ++  R+ +               
Sbjct: 592  IVGSLNPVIDPVLVVDKGNEKDGYPPDAVVSLNTKYANKKVRVDLTTAIKKATADRETDA 651

Query: 357  X-----XXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKPD 482
                    R+Y I A IVRIMK+RK + HT L+ E + QL   F P+
Sbjct: 652  VQNTVESDRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFTPN 698

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>CUL2_CAEEL (Q17390) Cullin-2|
          Length = 776

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            LTW++++   ++   +  K     +  YQ A LL F     +   +I  ++ +S D +++
Sbjct: 584  LTWLFNMSQGDVRLTYLDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLK 643

Query: 183  LLHSLSCAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIPLPPXXXXX-------X 341
             + ++      +L+ +   + ++ +     N   T +  + ++  P              
Sbjct: 644  TIRTI--LDVTLLTCDD--QNLTADSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVA 699

Query: 342  XXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKPD 482
                    R+Y ++ +IVRIMK+RKV+ H  LV E ++Q    F PD
Sbjct: 700  NTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPD 746

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>CUL3_YEAST (P53202) Cullin-3 (Cullin-B)|
          Length = 744

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 10/156 (6%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVR 182
            L W + L    I  +F++   E+  + Y   + LLF    +L+  EI    ++  DDV  
Sbjct: 548  LKWAHHLSVIEIGCQFNSGYYEISFSVYAGVIFLLFEDYEELTLGEIYELTHIPIDDVKS 607

Query: 183  LLHSLS-CAKYKILSKEPAGRTISPNDSFEFNSKFTDRMRRIKIPL---PPXXXXXXXXX 350
            L+ S+S   + KIL K  +    S N  F  N  F+   R++K+P+   P          
Sbjct: 608  LVMSMSTIPRCKILKKSSS----SGNMKFSVNYFFSSPNRKVKVPVIACPLPSQKSDNLA 663

Query: 351  XXXXXRRY------AIDASIVRIMKSRKVMAHTQLV 440
                   Y       + A IVRIMK+   ++H QL+
Sbjct: 664  TASSVDTYDNEIVMELSAIIVRIMKTEGKLSHQQLL 699

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>CUL5_PONPY (Q5RB36) Cullin-5 (CUL-5)|
          Length = 780

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFN--GSTKLSYSEIVTQLNLSDDDV 176
            L W + +    I+ K +    +L VTT+Q A+L  +N     K+S+  +     L D ++
Sbjct: 571  LHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAEL 630

Query: 177  VRLLHSLSC---AKYKILSKEP---------AGRTISPNDSFEF--NSKFTDRMRRI--- 305
             R L SL      K ++L  EP          G   S N  F    N+K   R +     
Sbjct: 631  RRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIG 690

Query: 306  KIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKPDF 485
            ++ L                R      +I++IMK RK +++ QL  E VE L  MF P  
Sbjct: 691  RLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQK 750

Query: 486  K 488
            K
Sbjct: 751  K 751

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>CUL5_HUMAN (Q93034) Cullin-5 (CUL-5) (Vasopressin-activated calcium-mobilizing|
            receptor) (VACM-1)
          Length = 780

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFN--GSTKLSYSEIVTQLNLSDDDV 176
            L W + +    I+ K +    +L VTT+Q A+L  +N     K+S+  +     L D ++
Sbjct: 571  LHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAEL 630

Query: 177  VRLLHSLSC---AKYKILSKEP---------AGRTISPNDSFEF--NSKFTDRMRRI--- 305
             R L SL      K ++L  EP          G   S N  F    N+K   R +     
Sbjct: 631  RRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIG 690

Query: 306  KIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKPDF 485
            ++ L                R      +I++IMK RK +++ QL  E VE L  MF P  
Sbjct: 691  RLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQK 750

Query: 486  K 488
            K
Sbjct: 751  K 751

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>CUL5_RAT (Q9JJ31) Cullin-5 (CUL-5) (Vasopressin-activated calcium-mobilizing|
            receptor) (VACM-1)
          Length = 780

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFN--GSTKLSYSEIVTQLNLSDDDV 176
            L W + +    I+ K +    +L VTT+Q A+L  +N     K+S+  +     L D ++
Sbjct: 571  LHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAEL 630

Query: 177  VRLLHSLSC---AKYKILSKEP---------AGRTISPNDSFEF--NSKFTDRMRRI--- 305
             R L SL      K ++L  +P          G   S N  F    N+K   R +     
Sbjct: 631  RRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIG 690

Query: 306  KIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKPDF 485
            ++ L                R      +I++IMK RK +++ QL  E VE L  MF P  
Sbjct: 691  RLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQK 750

Query: 486  K 488
            K
Sbjct: 751  K 751

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>CUL5_MOUSE (Q9D5V5) Cullin-5 (CUL-5)|
          Length = 780

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 19/181 (10%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFN--GSTKLSYSEIVTQLNLSDDDV 176
            L W + +    I+ K +    +L VTT+Q A+L  +N     K+S+  +     L D ++
Sbjct: 571  LHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAEL 630

Query: 177  VRLLHSLSC---AKYKILSKEP---------AGRTISPNDSFEF--NSKFTDRMRRI--- 305
             R L SL      K ++L  +P          G   S N  F    N+K   R +     
Sbjct: 631  RRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIG 690

Query: 306  KIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKPDF 485
            ++ L                R      +I++IMK RK +++ QL  E VE L  MF P  
Sbjct: 691  RLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQK 750

Query: 486  K 488
            K
Sbjct: 751  K 751

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>CDC53_YEAST (Q12018) Cell division control protein 53 (Cullin-A) (E3 ubiquitin|
            ligase complex SCF subunit CDC53)
          Length = 815

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 29/186 (15%)
 Frame = +3

Query: 3    LTWIYSLGTCNISA---KFDAKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDD 173
            L W++ L    + A   K         VT +Q A+LLL+N +  L+   I    +L+   
Sbjct: 599  LKWLWPLCRGELKADIGKPGRMPFNFTVTLFQMAILLLYNDADVLTLENIQEGTSLTIQH 658

Query: 174  VVRLLHSLSCAKYKILSKEPAG--RTISPNDSFEFNSKFTDRMRRI-------------- 305
            +   +  +   K+K++ + P G    + P   F+ +  +      I              
Sbjct: 659  IAAAM--VPFIKFKLIQQVPPGLDALVKPETQFKLSRPYKALKTNINFASGVKNDILQSL 716

Query: 306  ----------KIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVE 455
                      K+                  R+  ++A IVRIMK+++ + HT LV EC+ 
Sbjct: 717  SGGGHDNHGNKLGNKRLTEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIA 776

Query: 456  QLSRMF 473
            Q  + F
Sbjct: 777  QSHQRF 782

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>CUL5_RABIT (Q29425) Cullin-5 (CUL-5) (Vasopressin-activated calcium-mobilizing|
            receptor) (VACM-1)
          Length = 780

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 48/181 (26%), Positives = 72/181 (39%), Gaps = 19/181 (10%)
 Frame = +3

Query: 3    LTWIYSLGTCNISAKFDAKTIELIVTTYQAALLLLFN--GSTKLSYSEIVTQLNLSDDDV 176
            L W + +    I+ K +    +L VTT+Q A+L  +N     K+S+  +     L D ++
Sbjct: 571  LHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAEL 630

Query: 177  VRLLHSLSC---AKYKILSKEP---------AGRTISPNDSFEF--NSKFTDRMRRI--- 305
             R L SL      K ++L  EP          G   S N  F    N+K   R +     
Sbjct: 631  RRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIG 690

Query: 306  KIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVMAHTQLVAECVEQLSRMFKPDF 485
            ++ L                R        ++IMK RK +++ QL  E VE L  MF P  
Sbjct: 691  RLQLTTERMREEENEGIVQLRILRTRKLYIQIMKMRKKISNAQLQTELVEILKNMFLPQK 750

Query: 486  K 488
            K
Sbjct: 751  K 751

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>Y051_MYCPN (P75063) Hypothetical protein MG039 homolog (D09_orf384)|
          Length = 384

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 161 KVQLCYNLRVTKLSRSIEQQQQRSLIRCNNELY-SFSIKFCTDIAGSQGVY 12
           KVQ+C N  VT +S+ ++      L+  NNE   SF +K   D AG    Y
Sbjct: 168 KVQICTNTEVTNISKQVDGTY---LVWTNNETTPSFKVKKIIDAAGHYADY 215

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>YON1_SCHPO (Q9Y824) Hypothetical protein C1105.01 in chromosome II|
          Length = 1001

 Score = 24.3 bits (51), Expect(2) = 5.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 33  NISAKFDAKTIELIVTTYQAALLLLFNGSTKLSYSEI 143
           +I    D+K+++   + Y +ALL L   S    YS I
Sbjct: 34  SIDNYIDSKSLQRTASVYFSALLALIKQSNGFDYSSI 70



 Score = 23.5 bits (49), Expect(2) = 5.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 126 LSYSEIVTQLNLSDDDVVRLLHSLSCAKYKILS 224
           L Y++IV  L  ++DD   +  +L+C +  +LS
Sbjct: 91  LLYTQIVPYLQKNNDDAPTIRCALNCTQEFLLS 123

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>HTRA3_HUMAN (P83110) Probable serine protease HTRA3 precursor (EC 3.4.21.-)|
           (High-temperature requirement factor A3)
           (Pregnancy-related serine protease)
          Length = 453

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 365 PEVCN*CINCAYHEKSQSYGPYTASCG 445
           P++CN C+ CA  E     GP  + CG
Sbjct: 45  PDLCNCCLVCAASEGEPCGGPLDSPCG 71

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>BSN1_BACSU (Q03091) Extracellular ribonuclease precursor (EC 3.1.-.-)|
          Length = 289

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 78  TTYQAALLLLFNGSTKLSYSEIVTQLNLSDDD 173
           T  ++AL  + +G TKLSYS++   L  +D+D
Sbjct: 76  TALKSALHRIISGHTKLSYSQVWNALKETDED 107

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>RB_RAT (P33568) Retinoblastoma-associated protein (PP105) (RB) (Fragment)|
          Length = 899

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 54  AKTIELIVTTYQAALLLLFNGSTKLSYSEIVTQLNLSDDDVVRLLHS 194
           A  +E+++ TY  ++L   +  T LS+  I+  LNL   D  +++ S
Sbjct: 460 ACALEVVMATYSRSMLQNLDSGTDLSFPWILNVLNLKAFDFYKVIES 506


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,658,665
Number of Sequences: 219361
Number of extensions: 1100195
Number of successful extensions: 3318
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3292
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result