Clone Information

BLAST Search Result

Clone Name	bags25p01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula...	57	1e-08
2	ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu...	57	1e-08
3	ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu...	57	1e-08
4	ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu...	54	1e-07
5	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	50	1e-06
6	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	49	3e-06
7	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	49	3e-06
8	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	49	3e-06
9	SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ...	35	0.037
10	SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ...	35	0.037
11	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	35	0.064
12	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	34	0.083
13	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	34	0.083
14	SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ...	34	0.083
15	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	34	0.11
16	CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...	33	0.14
17	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	33	0.19
18	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	33	0.19
19	RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p...	33	0.19
20	RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p...	33	0.19
21	RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p...	33	0.19
22	RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p...	33	0.19
23	FCA_ARATH (O04425) Flowering time control protein FCA	33	0.24
24	MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)	32	0.32
25	RAVR2_MOUSE (Q7TPD6) Protein raver-2	32	0.32
26	MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)	32	0.32
27	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	32	0.32
28	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	32	0.32
29	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	32	0.32
30	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	32	0.54
31	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	32	0.54
32	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	31	0.70
33	U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 aux...	31	0.70
34	U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 aux...	31	0.70
35	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	31	0.70
36	NONA_DROLR (Q9GRX4) Protein no-on-transient A	31	0.70
37	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	31	0.70
38	NONA_DROVI (Q9GRW7) Protein no-on-transient A	31	0.70
39	RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interact...	31	0.92
40	RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif pro...	31	0.92
41	RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interact...	31	0.92
42	RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif pro...	31	0.92
43	RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interact...	31	0.92
44	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	31	0.92
45	C8AP2_MOUSE (Q9WUF3) CASP8-associated protein 2 (FLICE-associate...	31	0.92
46	RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interact...	31	0.92
47	IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ...	31	0.92
48	NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific pro...	31	0.92
49	RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif pro...	30	1.2
50	S27A6_HUMAN (Q9Y2P4) Long-chain fatty acid transport protein 6 (...	30	1.2
51	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	30	1.6
52	HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)	30	1.6
53	HSH49_YEAST (Q99181) Protein HSH49	30	2.0
54	NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr...	30	2.0
55	NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr...	30	2.0
56	NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot...	30	2.0
57	NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr...	30	2.0
58	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	30	2.0
59	IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ...	30	2.0
60	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	29	2.7
61	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	29	2.7
62	FLGK_BUCAI (P57428) Flagellar hook-associated protein 1 (HAP1)	29	2.7
63	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	29	2.7
64	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	29	2.7
65	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	29	2.7
66	NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul...	29	3.5
67	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	29	3.5
68	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	29	3.5
69	IF34_SCHPO (P78795) Probable eukaryotic translation initiation f...	29	3.5
70	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	29	3.5
71	RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro...	28	4.6
72	RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p...	28	4.6
73	RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro...	28	4.6
74	U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux...	28	4.6
75	RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro...	28	4.6
76	RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro...	28	4.6
77	RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro...	28	4.6
78	RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p...	28	4.6
79	ARS2_CAEEL (Q966L5) Arsenite-resistance protein 2 homolog	28	6.0
80	PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	28	6.0
81	NUCL_XENLA (P20397) Nucleolin (Protein C23)	28	6.0
82	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	28	7.8
83	MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos...	28	7.8
84	MYPRA_XENLA (P35801) Myelin proteolipid protein A (PLP-A) (Lipop...	28	7.8
85	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	28	7.8
86	ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2	28	7.8
87	EPHA2_MOUSE (Q03145) Ephrin type-A receptor 2 precursor (EC 2.7....	28	7.8
88	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	28	7.8
89	DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (...	28	7.8
90	CISA_BACSU (P17867) Putative DNA recombinase	28	7.8

>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = +1

Query: 34  AXHAIEELHDKD-HKGRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 210
           A +AI++L++ +   GR L    S    RLFVG +PK    EE+ S +K    GVV++ +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168

Query: 211 FKDLHNPSRNRGFLFVEYYNHAXSDYAR 294
           +    + ++NRGF FVEY +H  +  AR
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMAR 196



 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYN 270
           +F+G +P+ L E+EL  + +  G  +  + M  D +    NRG+ FV + N
Sbjct: 58  IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMDFN--GNNRGYAFVTFSN 105

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>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = +1

Query: 34  AXHAIEELHDKD-HKGRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 210
           A +AI++L++ +   GR L    S    RLFVG +PK    EE+ S +K    GVV++ +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168

Query: 211 FKDLHNPSRNRGFLFVEYYNHAXSDYAR 294
           +    + ++NRGF FVEY +H  +  AR
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMAR 196



 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYN 270
           +F+G +P+ L E+EL  + +  G  +  + M  D +    NRG+ FV + N
Sbjct: 58  IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMDFN--GNNRGYAFVTFSN 105

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>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = +1

Query: 34  AXHAIEELHDKD-HKGRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 210
           A +AI++L++ +   GR L    S    RLFVG +PK    EE+ S +K    GVV++ +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168

Query: 211 FKDLHNPSRNRGFLFVEYYNHAXSDYAR 294
           +    + ++NRGF FVEY +H  +  AR
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMAR 196



 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYN 270
           +F+G +P+ L E+EL  + +  G  +  + M  D +    NRG+ FV + N
Sbjct: 58  IFIGKLPRDLFEDELIPLCEKIGK-IYEMRMMMDFN--GNNRGYAFVTFSN 105

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>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = +1

Query: 34  AXHAIEELHDKDHK-GRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 210
           A +AI++L++ + + GR L    S    RLF G +PK    EE+ S +K    GVV++ +
Sbjct: 109 AKNAIKQLNNYEIRTGRLLGVCASVDNCRLFRGGIPKTKKREEILSEMKKVTEGVVDVIV 168

Query: 211 FKDLHNPSRNRGFLFVEYYNHAXSDYAR 294
           +    + ++NRGF FVEY +H  +  AR
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMAR 196



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYN 270
           +F+G +P+ L E+EL  + +  G  +  + +  D +    NRG+ FV + N
Sbjct: 58  IFIGKLPRDLFEDELIPLCEKIGK-IYEMRLMMDFN--GNNRGYAFVTFSN 105

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>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 24/73 (32%), Positives = 42/73 (57%)
 Frame = +1

Query: 76  GRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLF 255
           G+ L   +S A +RLFVG++PK  ++E +         G+V++ ++    +  +NRGF F
Sbjct: 234 GKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCF 293

Query: 256 VEYYNHAXSDYAR 294
           +EY +H  +  AR
Sbjct: 294 LEYEDHKSAAQAR 306



 Score = 31.6 bits (70), Expect = 0.54
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           +FVG +P+ L E+EL  + +  GP + ++ +  D  +  +NRG+ F+ +
Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFITF 213

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>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 22/73 (30%), Positives = 42/73 (57%)
 Frame = +1

Query: 76  GRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLF 255
           G+ +   +S A +RLFVG++PK  ++E++         G+ ++ ++    +  +NRGF F
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCF 290

Query: 256 VEYYNHAXSDYAR 294
           +EY +H  +  AR
Sbjct: 291 LEYEDHKTAAQAR 303



 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           +FVG +P+ L E+EL  + +  GP + ++ +  D      NRG+ FV +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMD-PLTGLNRGYAFVTF 210

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>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 22/73 (30%), Positives = 42/73 (57%)
 Frame = +1

Query: 76  GRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLF 255
           G+ +   +S A +RLFVG++PK  ++E++         G+ ++ ++    +  +NRGF F
Sbjct: 231 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCF 290

Query: 256 VEYYNHAXSDYAR 294
           +EY +H  +  AR
Sbjct: 291 LEYEDHKTAAQAR 303



 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           +FVG +P+ L E+EL  + +  GP + ++ +  D      NRG+ FV +
Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMD-PLTGLNRGYAFVTF 210

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>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 22/73 (30%), Positives = 42/73 (57%)
 Frame = +1

Query: 76  GRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLF 255
           G+ +   +S A +RLFVG++PK  ++E++         G+ ++ ++    +  +NRGF F
Sbjct: 141 GKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCF 200

Query: 256 VEYYNHAXSDYAR 294
           +EY +H  +  AR
Sbjct: 201 LEYEDHKTAAQAR 213



 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           +FVG +P+ L E+EL  + +  GP + ++ +  D      NRG+ FV +
Sbjct: 74  IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMD-PLTGLNRGYAFVTF 120

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>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3)
          Length = 981

 Score = 35.4 bits (80), Expect = 0.037
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +1

Query: 79   RTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL----HNPSRNRG 246
            +  R   S  KH+LF+  +P   ++EEL  I K  G         KDL    +   + +G
Sbjct: 808  KVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHG-------TVKDLRLVTNRAGKPKG 860

Query: 247  FLFVEYYNHAXSDYA 291
              +VEY N + +  A
Sbjct: 861  LAYVEYENESQASQA 875

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>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
           (Tip110)
          Length = 963

 Score = 35.4 bits (80), Expect = 0.037
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +1

Query: 79  RTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL----HNPSRNRG 246
           +  R   S  KH+LF+  +P   ++EEL  I K  G         KDL    +   + +G
Sbjct: 790 KVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHG-------TVKDLRLVTNRAGKPKG 842

Query: 247 FLFVEYYNHAXSDYA 291
             +VEY N + +  A
Sbjct: 843 LAYVEYENESQASQA 857

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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 34.7 bits (78), Expect = 0.064
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 103 QAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFL 252
           +   RL+VGN+P+ L+ +EL +I++  G   +   M+      SR  GF+
Sbjct: 81  EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFV 130

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>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD-LHNPSRNRGFLFVEYY 267
           ++FVG VP+  SE++L  + +  G  V  I + +D   NP +++G  FV +Y
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFY 67

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>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKD-LHNPSRNRGFLFVEYY 267
           ++FVG VP+  SE++L  + +  G  V  I + +D   NP +++G  FV +Y
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFY 67

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>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
           (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +1

Query: 79  RTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL----HNPSRNRG 246
           +  R   +  KH+LF+  +P   ++EEL  I K  G         KDL    +   + +G
Sbjct: 790 KVFRYSTTLEKHKLFISGLPFSCTKEELEDICKAHG-------TVKDLRLVTNRAGKPKG 842

Query: 247 FLFVEYYNHAXSDYA 291
             +VEY N + +  A
Sbjct: 843 LAYVEYENESQASQA 857

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>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +1

Query: 100 SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           S++   ++VGN+P  + E E+  +    GP VV I    DL  P R  G+ FVE+
Sbjct: 3   SRSSRTVYVGNLPGDIREREVEDLFSKYGP-VVQI----DLKVPPRPPGYAFVEF 52

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>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP--SRNRGFLFVEYYN 270
           +FVGN+P  +SE+++T I    GP    ++ FK + +P     +G+ F E+++
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGP----VKTFKLVLDPETGSGKGYGFCEFFD 57

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>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 258
           RL+VGN+P  ++  +L+ I    G  V N+E+  D     R+RGF FV
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGT-VANVEIVYD-RVTDRSRGFAFV 160

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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 20/58 (34%), Positives = 34/58 (58%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYA 291
           ++VG + + +SE  L  ++   GP VV++ M KD    + ++GF FVE+     +DYA
Sbjct: 15  IYVGGLDEKVSESILWELMVQAGP-VVSVNMPKD-RVTANHQGFGFVEFMGEEDADYA 70

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>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = +1

Query: 10  LHLLPRHVAXHAIEELHDKDHK-GRTLRXXLSQAKH----RLFVGNVPKGLSEEELTSII 174
           +H+     A  AIE LH  + + GR L   +S+ +     ++FVGNV    + +EL S+ 
Sbjct: 40  VHMRENAGALRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLF 99

Query: 175 KGKGPGVVNIEMFKD 219
           + +G  V+  ++ KD
Sbjct: 100 ERRG-RVIECDVVKD 113

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>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = +1

Query: 10  LHLLPRHVAXHAIEELHDKDHK-GRTLRXXLSQAKH----RLFVGNVPKGLSEEELTSII 174
           +H+     A  AIE LH  + + GR L   +S+ +     ++FVGNV    + +EL S+ 
Sbjct: 40  VHMRENAGAVRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLF 99

Query: 175 KGKGPGVVNIEMFKD 219
           + +G  V+  ++ KD
Sbjct: 100 ERRG-RVIECDVVKD 113

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>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)|
           (RRM-containing coactivator activator/modulator)
           (Synaptotagmin-interacting protein) (SYT-interacting
           protein)
          Length = 669

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = +1

Query: 10  LHLLPRHVAXHAIEELHDKDHK-GRTLRXXLSQAKH----RLFVGNVPKGLSEEELTSII 174
           +H+     A  AIE LH  + + GR L   +S+ +     ++FVGNV    + +EL S+ 
Sbjct: 40  VHMRENAGALRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLF 99

Query: 175 KGKGPGVVNIEMFKD 219
           + +G  V+  ++ KD
Sbjct: 100 ERRG-RVIECDVVKD 113

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>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = +1

Query: 10  LHLLPRHVAXHAIEELHDKDHK-GRTLRXXLSQAKH----RLFVGNVPKGLSEEELTSII 174
           +H+     A  AIE LH  + + GR L   +S+ +     ++FVGNV    + +EL S+ 
Sbjct: 40  VHMRENAGAVRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLF 99

Query: 175 KGKGPGVVNIEMFKD 219
           + +G  V+  ++ KD
Sbjct: 100 ERRG-RVIECDVVKD 113

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>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYA 291
           +LFVG+VP+  +EEE+    +  G  V+ + + KD     + +G  FV+Y     +D A
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHG-NVLEVALIKD-KRTGQQQGCCFVKYATSKDADRA 177

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>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRG 246
           ++R+F+ N+P  +  + +  +++ K   V  +E+FKD    SR  G
Sbjct: 90  RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCG 135

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>RAVR2_MOUSE (Q7TPD6) Protein raver-2|
          Length = 673

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +1

Query: 16  LLPRHVAXHAIEELHDKDHKGRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGV 195
           LL    A  AI+  H    +GR L   L      L + N+P   + EE   +++  G   
Sbjct: 99  LLNGEQAQSAIQRFHQFSFRGRELTVQLQPTDALLCITNLPISFTLEEFEELVRAYG--- 155

Query: 196 VNIEMFKDLHN--PSRNRGFLFVEYYNHAXSDYAR 294
            NIE    +++     ++G+ FVEY     +  AR
Sbjct: 156 -NIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKAR 189

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>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRG 246
           ++R+F+ N+P  +  + +  +++ K   V  +E+FKD    SR  G
Sbjct: 99  RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCG 144

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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 76  GRTLRX-XLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFL 252
           G T+R   + ++   +FVGN+P   +EE+L  I    GP VV+  +  D     + +G+ 
Sbjct: 3   GLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVYD-RETGKPKGYG 60

Query: 253 FVEY 264
           F EY
Sbjct: 61  FCEY 64

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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 76  GRTLRX-XLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFL 252
           G T+R   + ++   +FVGN+P   +EE+L  I    GP VV+  +  D     + +G+ 
Sbjct: 3   GLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVYD-RETGKPKGYG 60

Query: 253 FVEY 264
           F EY
Sbjct: 61  FCEY 64

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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 76  GRTLRX-XLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFL 252
           G T+R   + ++   +FVGN+P   +EE+L  I    GP VV+  +  D     + +G+ 
Sbjct: 3   GLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVYD-RETGKPKGYG 60

Query: 253 FVEY 264
           F EY
Sbjct: 61  FCEY 64

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 20/58 (34%), Positives = 33/58 (56%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYA 291
           ++VG + + +SE  L  +    GP VVN  M KD     +++G+ FVE+ +   +DYA
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGP-VVNTHMPKD-RVTGQHQGYGFVEFLSEEDADYA 70

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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           +FVGN+P   +EE+L  I    GP VV+  +  D     + +G+ F EY
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGP-VVSFRLVYD-RETGKPKGYGFCEY 64

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKG-PGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYA 291
           RLFVGN+P  ++E+E   +    G PG V I         ++ +GF F++  + A ++ A
Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI---------NKGKGFGFIKLESRALAEIA 348

Query: 292 R 294
           +
Sbjct: 349 K 349

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>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 475

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +1

Query: 112 HRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYA 291
           H+LF+G +P  L+++++  ++   GP +    + KD      ++G+ F EY +   +D A
Sbjct: 259 HKLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKD-SATGLSKGYAFCEYVDINVTDQA 316

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>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (hU2AF(65))
          Length = 475

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +1

Query: 112 HRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYA 291
           H+LF+G +P  L+++++  ++   GP +    + KD      ++G+ F EY +   +D A
Sbjct: 259 HKLFIGGLPNYLNDDQVKELLTSFGP-LKAFNLVKD-SATGLSKGYAFCEYVDINVTDQA 316

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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 103 QAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHA 276
           +  +R++VGN+P G+ +  L  +    G  VV+  +  D     R+RGF FV   + A
Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGK-VVSARVVYD-RETGRSRGFGFVTMASEA 282

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>NONA_DROLR (Q9GRX4) Protein no-on-transient A|
          Length = 698

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHA 276
           ++RL+VGN+   +++EEL  + K  G      E+ +   N  +N  FL V+Y+ +A
Sbjct: 280 RNRLYVGNLTNDITDEELREMFKPYG------EIGEIFSNLEKNFTFLKVDYHINA 329

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>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKG-PGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYA 291
           RLFVGN+P  ++E+E   +    G PG V I         ++ +GF F++  + A ++ A
Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI---------NKGKGFGFIKLESRALAEIA 340

Query: 292 R 294
           +
Sbjct: 341 K 341

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>NONA_DROVI (Q9GRW7) Protein no-on-transient A|
          Length = 697

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHA 276
           ++RL+VGN+   +++EEL  + K  G      E+ +   N  +N  FL V+Y+ +A
Sbjct: 284 RNRLYVGNLTNDITDEELREMFKPYG------EIGEIFSNLEKNFTFLKVDYHINA 333

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>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2|
           (Suppressor of CDC2 with RNA-binding motif 3)
          Length = 407

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           L++ N+P  + E+EL  ++K  G  V++  + +D    SR  GF  +E
Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQ-VISTRILRDTSGTSRGVGFARME 183

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>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 266

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +1

Query: 100 SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAX 279
           ++A   LFVGN+   ++EE L  +    GP V+ +++ KD     + + F FV + +   
Sbjct: 6   AEADRTLFVGNLETKVTEELLFELFHQAGP-VIKVKIPKD--KDGKPKQFAFVNFKHEVS 62

Query: 280 SDYA 291
             YA
Sbjct: 63  VPYA 66

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>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1) (Suppressor
           of CDC2 with RNA-binding motif 2)
          Length = 406

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           L++ N+P  + E+EL +++K  G  V++  + +D    SR  GF  +E
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQ-VISTRILRDSSGTSRGVGFARME 189

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>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 262

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +1

Query: 100 SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAX 279
           ++A   LFVGN+   ++EE L  +    GP V+ +++ KD     + + F FV + +   
Sbjct: 6   AEADRTLFVGNLETKVTEELLFELFHQAGP-VIKVKIPKD--KDGKPKQFAFVNFKHEVS 62

Query: 280 SDYA 291
             YA
Sbjct: 63  VPYA 66

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>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2|
          Length = 383

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           L++ N+P  + E+EL  ++K  G  V++  + +D    SR  GF  +E
Sbjct: 139 LYISNLPLSMDEQELEGMLKPFGQ-VISTRILRDTSGASRGVGFARME 185

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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHN--PSRNRGFLFV 258
           +LFVGN+P  +   +L  + +  G    N+EM + +++    R+RGF FV
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAG----NVEMVEVIYDKITGRSRGFGFV 137

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>C8AP2_MOUSE (Q9WUF3) CASP8-associated protein 2 (FLICE-associated huge protein)|
          Length = 1962

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +1

Query: 7   LLHLLPRHVAXHAIEELHDKDHKGRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKG 186
           ++H+LP H +  A +EL  K H G          K ++ +       SE  L  +++   
Sbjct: 696 VMHVLPEHASEDASQELDTKRHDGINACAISEGVKTKVILSPKAAAASESHLAPLVEEPS 755

Query: 187 PGVVN 201
             +VN
Sbjct: 756 ISLVN 760

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>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1)
          Length = 403

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           L++ N+P  + E+EL +++K  G  V++  + +D    SR  GF  +E
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQ-VISTRVLRDSSGASRGVGFARME 189

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>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 121 FVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           F+GN+P  ++EE +    +G     V +   ++  NP R +GF + E+
Sbjct: 99  FLGNLPYDVTEESIKEFFRGLNISAVRLP--REPSNPERLKGFGYAEF 144

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>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)|
          Length = 700

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHA 276
           ++RL+VGN+   ++++EL  + K  G      E+ +   N  +N  FL V+Y+ +A
Sbjct: 301 RNRLYVGNLTNDITDDELREMFKPYG------EISEIFSNLDKNFTFLKVDYHPNA 350

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>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 265

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +1

Query: 100 SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAX 279
           ++A   LFVGN+   ++EE L  +    GP V+ +++ KD     + + F FV + +   
Sbjct: 6   AEADRTLFVGNLETKVTEELLFELFHQAGP-VIKVKIPKD--KDGKLKQFAFVNFKHEVS 62

Query: 280 SDYA 291
             YA
Sbjct: 63  VPYA 66

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>S27A6_HUMAN (Q9Y2P4) Long-chain fatty acid transport protein 6 (Fatty acid|
           transport protein 6) (FATP-6) (Very long-chain acyl-CoA
           synthetase homolog 1) (VLCSH1) (hVLCS-H1)
           (Fatty-acid-coenzyme A ligase, very long-chain 2)
           (Solute carrier family 27 membe
          Length = 619

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 194 SSILRCLRICITQAVIVGSSLLSTITMLXQTMPD 295
           +S+L C+R C  +A++VG+ LL T+  +  ++ +
Sbjct: 142 NSLLNCIRACGPRALVVGADLLGTVEEILPSLSE 175

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>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 258
           +LFVGN+P  +  E+L  I      GVV I          R+RGF FV
Sbjct: 56  KLFVGNLPYDVDSEKLAGIF--DAAGVVEIAEVIYNRETDRSRGFGFV 101

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>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)|
          Length = 535

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHA 276
           ++RL++GN+   ++EEEL  +    G      E+ +   N  +N  FL ++Y  +A
Sbjct: 112 RNRLYIGNLTSDVTEEELKELFSPYG------EISEAFINAEKNFAFLKIDYRANA 161

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>HSH49_YEAST (Q99181) Protein HSH49|
          Length = 213

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYA 291
           ++VGN+   +++E+L  +     P V+ I+  KD    +  +G+ F+E+YN   + YA
Sbjct: 11  VYVGNIDPRITKEQLYELFIQINP-VLRIKYPKDKVLQAY-QGYAFIEFYNQGDAQYA 66

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>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDY 288
           + RLFVGN+P  ++EEE+  + +  G      E+F  +H   +++GF F+       ++ 
Sbjct: 73  RSRLFVGNLPPDITEEEMRKLFEKYGKAG---EVF--IH---KDKGFGFIRLETRTLAEI 124

Query: 289 AR 294
           A+
Sbjct: 125 AK 126

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>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO|
           protein) (54 kDa nuclear RNA- and DNA-binding protein)
           (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55)
           (DNA-binding p52/p100 complex, 52 kDa subunit)
          Length = 471

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDY 288
           + RLFVGN+P  ++EEE+  + +  G      E+F  +H   +++GF F+       ++ 
Sbjct: 73  RSRLFVGNLPPDITEEEMRKLFEKYGKAG---EVF--IH---KDKGFGFIRLETRTLAEI 124

Query: 289 AR 294
           A+
Sbjct: 125 AK 126

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>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 476

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDY 288
           + RLFVGN+P  ++EEE+  + +  G      E+F  +H   +++GF F+       ++ 
Sbjct: 78  RSRLFVGNLPPDITEEEMRKLFEKYGKAG---EVF--IH---KDKGFGFIRLETRTLAEI 129

Query: 289 AR 294
           A+
Sbjct: 130 AK 131

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>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +1

Query: 109 KHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDY 288
           + RLFVGN+P  ++EEE+  + +  G      E+F  +H   +++GF F+       ++ 
Sbjct: 75  RSRLFVGNLPPDITEEEMRKLFEKYGKAG---EVF--IH---KDKGFGFIRLETRTLAEI 126

Query: 289 AR 294
           A+
Sbjct: 127 AK 128

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>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP-----SRNRGFLFVEYY--NH 273
           RLFV N+    SEE+L  +    GP         +LH P      + +GF FV +    H
Sbjct: 401 RLFVRNLSYTSSEEDLEKLFSAYGP-------LSELHYPIDSLTKKPKGFAFVTFMFPEH 453

Query: 274 AXSDYA 291
           A   YA
Sbjct: 454 AVKAYA 459

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>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 121 FVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           F+GN+P  ++E+ +    +G     V +   ++  NP R +GF + E+
Sbjct: 99  FLGNLPYDVTEDSIKDFFRGLNISAVRLP--REPSNPDRLKGFGYAEF 144

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>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNP-----SRNRGFLFVEYY--NH 273
           RLFV N+P   +EE+L  +    GP         +LH P      + +GF F+ +    H
Sbjct: 403 RLFVRNLPYTSTEEDLEKLFSKYGP-------LSELHYPIDSLTKKPKGFAFITFMFPEH 455

Query: 274 AXSDYA 291
           A   Y+
Sbjct: 456 AVKAYS 461

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>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 34  AXHAIEELHDKDHKGRTLRXXLSQAKH 114
           A  A++EL+DK++KG+ L    +Q KH
Sbjct: 314 AQKAVDELNDKEYKGKKLYVGRAQKKH 340



 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNH 273
           +++ N+   ++E+E + +  G+   + ++ + KD ++  + RGF FV Y NH
Sbjct: 263 VYIKNLDTEITEQEFSDLF-GQFGEITSLSLVKDQND--KPRGFGFVNYANH 311

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>FLGK_BUCAI (P57428) Flagellar hook-associated protein 1 (HAP1)|
          Length = 543

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 136 PKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDY 288
           P   + EEL  +IK   P   +     DL+NP+RN   +  ++YN+   D+
Sbjct: 412 PYSKTLEELELLIKPNEPFAYSST--DDLNNPNRNNAIIINKFYNNVLVDH 460

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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 103 QAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHA 276
           Q  +R++VGN+P  + +  L  +    G  VV+  +  D     R+RGF FV   + A
Sbjct: 188 QPTYRIYVGNIPWDIDDARLEQVFSEHGK-VVSARVVFD-RESGRSRGFGFVTMSSEA 243



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 258
           +LFVGN+P  +  E L  +   +  GVV I          R+RGF FV
Sbjct: 98  KLFVGNLPYDIDSEGLAQLF--QQAGVVEIAEVIYNRETDRSRGFGFV 143

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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 97  LSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           + ++   +FVGN+P   +EE+L  I    G  VV+  +  D     + +G+ F EY
Sbjct: 11  MDRSLRSVFVGNIPYEATEEQLKDIFSEVG-SVVSFRLVYD-RETGKPKGYGFCEY 64

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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 97  LSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           + ++   +FVGN+P   +EE+L  I    G  VV+  +  D     + +G+ F EY
Sbjct: 11  MDRSLRSVFVGNIPYEATEEQLKDIFSEVG-SVVSFRLVYD-RETGKPKGYGFCEY 64

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>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy|
           suppressor of sporulation protein msa2)
          Length = 529

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 100 SQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAX 279
           S A   +F+GN+P G++E+E+   ++  GP    I+  K +      R   FV + N A 
Sbjct: 202 SGACRNVFLGNLPNGITEDEIREDLEPFGP----IDQIKIV----TERNIAFVHFLNIAA 253

Query: 280 S 282
           +
Sbjct: 254 A 254

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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHN--PSRNRGFLFV 258
           +LFVGN+P  +    L  + +  G    N+EM + +++    R+RGF FV
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAG----NVEMVEVIYDKLTGRSRGFGFV 133

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>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYA 291
           +++ N  + + ++ L  I    G   +++++  D  N  R+RGF FV Y NH  +  A
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFG-NTLSVKVMMD--NSGRSRGFGFVNYGNHEEAQKA 247

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>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3|
           RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3
           p33) (Translation initiation factor eIF3, p33 subunit)
          Length = 282

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEYYNHAXSDYAR 294
           L V N+     EEEL  + +  G G+  + + KD     R +GF FV YY+   +  AR
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFG-GIQRVYLAKDKET-GRAKGFAFVSYYDRDCAIKAR 260

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>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +1

Query: 79  RTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFV 258
           RTL+       +++F+G +P  ++E +L +     G     + M+      SR  GFL  
Sbjct: 85  RTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF 144

Query: 259 E 261
           E
Sbjct: 145 E 145

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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           +LF+GN+P+  +E+E+ S+ +  G  V+  ++ K       N GF+ +E
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGK-VLECDIIK-------NYGFVHIE 43

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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           +LF+GN+P+  +E+E+ S+ +  G  V+  ++ K       N GF+ +E
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGK-VLECDIIK-------NYGFVHIE 43

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>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           +LF+GN+P+  +E+E+ S+ +  G  V+  ++ K       N GF+ +E
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGK-VLECDIIK-------NYGFVHIE 43

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>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor|
           50 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 416

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +1

Query: 97  LSQAKHRLFVGNVPKGLSEEEL 162
           +++   RL+VGN+P G++EEE+
Sbjct: 88  ITRQARRLYVGNIPFGVTEEEM 109

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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           +LF+GN+P+  +E+E+ S+ +  G  V+  ++ K       N GF+ +E
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGK-VLECDIIK-------NYGFVHIE 43

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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           +LF+GN+P+  +E+E+ S+ +  G  V+  ++ K       N GF+ +E
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGK-VLECDIIK-------NYGFVHIE 43

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>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           +LF+GN+P+  +E+E+ S+ +  G  V+  ++ K       N GF+ +E
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGK-VLECDIIK-------NYGFVHIE 43

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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVE 261
           +LF+GN+P+  +E+E+ S+ +  G  V+  ++ K       N GF+ +E
Sbjct: 3   KLFIGNLPREATEQEIRSLFEQYGK-VLECDIIK-------NYGFVHIE 43

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>ARS2_CAEEL (Q966L5) Arsenite-resistance protein 2 homolog|
          Length = 712

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 43  AIEELHDKDHKGRTLRXXLSQAKHR---LFVGNVPKGLSEEELTSIIKGKGPGVVNIEM 210
           A EEL +   +  T +       HR   +F+ N+P GL+ EEL  + K K PG + + +
Sbjct: 240 ATEELEEGAIEDGTEKSSNKVNIHRTCSVFLRNIPPGLTYEELEGLCK-KSPGFLRLAL 297

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>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 97  LSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSRNRGFLFVEY 264
           +S  K  ++VG +   ++E  L +     G  + +I+M  D +   R+RGF F+EY
Sbjct: 1   MSNDKRTIYVGGLADEVTERLLNNAFIPFGD-IADIQMPAD-YESQRHRGFAFIEY 54

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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = +1

Query: 73  KGRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPS----RN 240
           K +T      +    LFV N+P   + EEL  I           E  KD+  P+     N
Sbjct: 311 KNKTAENKKERDSRTLFVKNIPYSTTVEELQEI----------FENAKDIRIPTGKDGSN 360

Query: 241 RGFLFVEYYNHAXSDYA 291
           +G  +VE+ N   ++ A
Sbjct: 361 KGIAYVEFSNEDEANKA 377

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>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap|
           binding protein) (NCBP 20 kDa subunit) (CBP20)
           (Fragment)
          Length = 148

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 46  IEELHDKDHKG-RTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDL 222
           + +  D+  +G R+ +  L +    L+VGN+    +EE++  +    G  V  I M  D 
Sbjct: 9   LSQYRDQHFRGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGD-VKRIVMGLDK 67

Query: 223 HNPSRNRGFLFVEYYNHAXSDYA 291
              +   GF FVEYY  A +  A
Sbjct: 68  VKKTAC-GFCFVEYYTRADAGTA 89

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>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +1

Query: 49  EELHDKDHKGRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHN 228
           E+   K H  R  R   +     +++G++PK L E +L       G  V  + + +    
Sbjct: 20  EDFQQKVHDIRRKRKANALTPGVIYIGHIPKSLIEPQLQEYFNQFGT-VTRLRLSRS-KK 77

Query: 229 PSRNRGFLFVEY 264
              ++G+ +VEY
Sbjct: 78  TGNSKGYAYVEY 89

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>MYPRA_XENLA (P35801) Myelin proteolipid protein A (PLP-A) (Lipophilin-A)|
          Length = 280

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 169 CSSAPPHS--TLWVHCQQITCAWPGTXXXAVFSPCGP--CHAVLQWHXEP 32
           CS+ P +     WV CQ I  A+PG    +V + C     + VL W+  P
Sbjct: 170 CSAVPVYIYFNTWVTCQSI--AFPGKTTTSVSTLCSDRRMYGVLPWNAFP 217

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>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 46  IEELHDKDHKGRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLH 225
           IE++ D D      R      K  +FVGN+P       L  + +  G    N+EM + ++
Sbjct: 67  IEDVEDGDDGVEEERNFSPDLK--IFVGNLPFSADSAALAELFERAG----NVEMVEVIY 120

Query: 226 N--PSRNRGFLFV 258
           +    R+RGF FV
Sbjct: 121 DKLTGRSRGFGFV 133

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>ORB2_DROME (Q9VSR3) Probable RNA-binding protein orb2|
          Length = 704

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVN 201
           ++FVG +P  + E+E+T+  +  GP VV+
Sbjct: 448 KVFVGGLPPDIDEDEITTSFRRFGPLVVD 476

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>EPHA2_MOUSE (Q03145) Ephrin type-A receptor 2 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor ECK) (Epithelial cell
           kinase) (MPK-5) (SEK-2)
          Length = 977

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 121 ITC--AWPGTXXXAVFSPCGPCHAVLQWHXEPHAL 23
           +TC   WP +        CGPC A +++   PHAL
Sbjct: 365 VTCEQCWPES------GECGPCEASVRYSEPPHAL 393

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>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 115 RLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHN--PSRNRGFLFV 258
           +LFVGN+   +   +L  + +  G    N+EM + +++    R+RGF FV
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAG----NVEMVEVIYDKVTGRSRGFGFV 145

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>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride|
           kinase theta) (DGK-theta) (DAG kinase theta)
          Length = 942

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 118 LFVGNVPKGLSEEELTSIIKGKG 186
           LFVG +P GLS EE +S++   G
Sbjct: 501 LFVGGLPPGLSPEEYSSLLHEAG 523

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>CISA_BACSU (P17867) Putative DNA recombinase|
          Length = 500

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 23/76 (30%), Positives = 31/76 (40%)
 Frame = +1

Query: 58  HDKDHKGRTLRXXLSQAKHRLFVGNVPKGLSEEELTSIIKGKGPGVVNIEMFKDLHNPSR 237
           H KD+   T R   S AK R       K +SE +L   + G        E+FK + NP +
Sbjct: 320 HGKDYYVYTCRKNYSGAKDR----GCGKEMSENKLNRHVWG--------EIFKFITNPQK 367

Query: 238 NRGFLFVEYYNHAXSD 285
              F   E  NH   +
Sbjct: 368 YVSFKEAEQSNHLSDE 383


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,060,439
Number of Sequences: 219361
Number of extensions: 775044
Number of successful extensions: 2084
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 2046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2082
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result