ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags26e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483606.1| Oryza sativa (japonica cultivar-group), mRNA 141 2e-30
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
3dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
4dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
5dbj|AK101733.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
6dbj|AK066525.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
7gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, r... 42 1.1
8gb|AE003732.3| Drosophila melanogaster chromosome 3R, section 70... 42 1.1
9gb|AC114010.6| Mus musculus BAC clone RP24-378K23 from chromosom... 40 4.2
10gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosom... 40 4.2
11gb|AC124378.3| Mus musculus BAC clone RP24-397F8 from chromosome... 40 4.2
12gb|AC098587.5| Homo sapiens BAC clone RP11-231C18 from 4, comple... 40 4.2
13gb|AC113481.12| Mus musculus chromosome 12, clone RP23-310G22, c... 40 4.2
14ref|XM_761394.1| Theileria parva strain Muguga chromosome 1 hypo... 40 4.2
15gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete ... 40 4.2
16gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete s... 40 4.2
17ref|XM_964454.1| PREDICTED: Tribolium castaneum hypothetical pro... 40 4.2
18emb|BX571867.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 4.2
19gb|AC066616.7| Homo sapiens chromosome 15 clone RP11-925D8 map 1... 40 4.2
20gb|AC111006.5| Homo sapiens BAC clone RP11-761E21 from 4, comple... 40 4.2
21gb|AC160924.1| Medicago truncatula chromosome 7 BAC clone mte1-7... 40 4.2
22gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355... 40 4.2 
>ref|XM_483606.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3172

 Score =  141 bits (71), Expect = 2e-30
 Identities = 101/111 (90%)
 Strand = Plus / Plus

                                                                        
Query: 47   gtggttttgttccttctgggcagatggctgggatgcattcttatatgctgcatcctcaag 106
            |||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||
Sbjct: 1380 gtggttttgttccttctgcgcagattgccgggatgcattcttatatgatgcatcctcaag 1439

                                                               
Query: 107  gtattcctcaatctttagcctcgcccaactctggtgttcctcagtttggta 157
            || |||||| ||||||||| ||||| ||||| | |||||||||||||||||
Sbjct: 1440 gtgttcctccatctttagcatcgcctaactccgctgttcctcagtttggta 1490



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                        
Query: 196  aatcaacaggaagcacaagctgtctcacaaacacctgatgcaacaaactatgacccatca 255
            |||||||||||||| ||   || ||| || ||||| |||| |||||||||| || |||| 
Sbjct: 1535 aatcaacaggaagctcagaatgcctctcagacaccagatgaaacaaactatcacacatcc 1594

                                          
Query: 256  caatcagatcagaatgcattacaaccagct 285
            | | |||||||||| ||||| |||| ||||
Sbjct: 1595 ccaccagatcagaaggcattgcaacaagct 1624
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  141 bits (71), Expect = 2e-30
 Identities = 101/111 (90%)
 Strand = Plus / Minus

                                                                            
Query: 47       gtggttttgttccttctgggcagatggctgggatgcattcttatatgctgcatcctcaag 106
                |||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||
Sbjct: 27206139 gtggttttgttccttctgcgcagattgccgggatgcattcttatatgatgcatcctcaag 27206080

                                                                   
Query: 107      gtattcctcaatctttagcctcgcccaactctggtgttcctcagtttggta 157
                || |||||| ||||||||| ||||| ||||| | |||||||||||||||||
Sbjct: 27206079 gtgttcctccatctttagcatcgcctaactccgctgttcctcagtttggta 27206029
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>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1521_G02
          Length = 117964

 Score =  141 bits (71), Expect = 2e-30
 Identities = 101/111 (90%)
 Strand = Plus / Minus

                                                                          
Query: 47     gtggttttgttccttctgggcagatggctgggatgcattcttatatgctgcatcctcaag 106
              |||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||
Sbjct: 107172 gtggttttgttccttctgcgcagattgccgggatgcattcttatatgatgcatcctcaag 107113

                                                                 
Query: 107    gtattcctcaatctttagcctcgcccaactctggtgttcctcagtttggta 157
              || |||||| ||||||||| ||||| ||||| | |||||||||||||||||
Sbjct: 107112 gtgttcctccatctttagcatcgcctaactccgctgttcctcagtttggta 107062
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>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0623F08
          Length = 154540

 Score =  141 bits (71), Expect = 2e-30
 Identities = 101/111 (90%)
 Strand = Plus / Minus

                                                                         
Query: 47    gtggttttgttccttctgggcagatggctgggatgcattcttatatgctgcatcctcaag 106
             |||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||
Sbjct: 29342 gtggttttgttccttctgcgcagattgccgggatgcattcttatatgatgcatcctcaag 29283

                                                                
Query: 107   gtattcctcaatctttagcctcgcccaactctggtgttcctcagtttggta 157
             || |||||| ||||||||| ||||| ||||| | |||||||||||||||||
Sbjct: 29282 gtgttcctccatctttagcatcgcctaactccgctgttcctcagtttggta 29232
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>dbj|AK101733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061H08, full
           insert sequence
          Length = 1855

 Score =  141 bits (71), Expect = 2e-30
 Identities = 101/111 (90%)
 Strand = Plus / Plus

                                                                       
Query: 47  gtggttttgttccttctgggcagatggctgggatgcattcttatatgctgcatcctcaag 106
           |||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||
Sbjct: 200 gtggttttgttccttctgcgcagattgccgggatgcattcttatatgatgcatcctcaag 259

                                                              
Query: 107 gtattcctcaatctttagcctcgcccaactctggtgttcctcagtttggta 157
           || |||||| ||||||||| ||||| ||||| | |||||||||||||||||
Sbjct: 260 gtgttcctccatctttagcatcgcctaactccgctgttcctcagtttggta 310



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                       
Query: 196 aatcaacaggaagcacaagctgtctcacaaacacctgatgcaacaaactatgacccatca 255
           |||||||||||||| ||   || ||| || ||||| |||| |||||||||| || |||| 
Sbjct: 355 aatcaacaggaagctcagaatgcctctcagacaccagatgaaacaaactatcacacatcc 414

                                         
Query: 256 caatcagatcagaatgcattacaaccagct 285
           | | |||||||||| ||||| |||| ||||
Sbjct: 415 ccaccagatcagaaggcattgcaacaagct 444
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>dbj|AK066525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072L17, full
            insert sequence
          Length = 3173

 Score =  141 bits (71), Expect = 2e-30
 Identities = 101/111 (90%)
 Strand = Plus / Plus

                                                                        
Query: 47   gtggttttgttccttctgggcagatggctgggatgcattcttatatgctgcatcctcaag 106
            |||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||
Sbjct: 1380 gtggttttgttccttctgcgcagattgccgggatgcattcttatatgatgcatcctcaag 1439

                                                               
Query: 107  gtattcctcaatctttagcctcgcccaactctggtgttcctcagtttggta 157
            || |||||| ||||||||| ||||| ||||| | |||||||||||||||||
Sbjct: 1440 gtgttcctccatctttagcatcgcctaactccgctgttcctcagtttggta 1490



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 73/90 (81%)
 Strand = Plus / Plus

                                                                        
Query: 196  aatcaacaggaagcacaagctgtctcacaaacacctgatgcaacaaactatgacccatca 255
            |||||||||||||| ||   || ||| || ||||| |||| |||||||||| || |||| 
Sbjct: 1535 aatcaacaggaagctcagaatgcctctcagacaccagatgaaacaaactatcacacatcc 1594

                                          
Query: 256  caatcagatcagaatgcattacaaccagct 285
            | | |||||||||| ||||| |||| ||||
Sbjct: 1595 ccaccagatcagaaggcattgcaacaagct 1624
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>gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone
             BACR05I01, complete sequence
          Length = 187151

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    tgggcagatggctgggatgca 83
             |||||||||||||||||||||
Sbjct: 35511 tgggcagatggctgggatgca 35491
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>gb|AE003732.3| Drosophila melanogaster chromosome 3R, section 70 of 118 of the complete
              sequence
          Length = 224529

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     tgggcagatggctgggatgca 83
              |||||||||||||||||||||
Sbjct: 183843 tgggcagatggctgggatgca 183823
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>gb|AC114010.6| Mus musculus BAC clone RP24-378K23 from chromosome 12, complete
             sequence
          Length = 175670

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   atgcattacaaccagcttct 288
             ||||||||||||||||||||
Sbjct: 94385 atgcattacaaccagcttct 94366
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>gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosome 12, complete sequence
          Length = 199646

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 209    cacaagctgtctcacaaacacctg 232
              ||||||||||||||||| ||||||
Sbjct: 130699 cacaagctgtctcacaaccacctg 130676
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>gb|AC124378.3| Mus musculus BAC clone RP24-397F8 from chromosome 12, complete sequence
          Length = 140121

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 209   cacaagctgtctcacaaacacctg 232
             ||||||||||||||||| ||||||
Sbjct: 21160 cacaagctgtctcacaaccacctg 21137
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>gb|AC098587.5| Homo sapiens BAC clone RP11-231C18 from 4, complete sequence
          Length = 132164

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 84    ttcttatatgctgcatcctcaaggtattcctc 115
             |||||| |||||| ||||||||||| ||||||
Sbjct: 71258 ttcttagatgctggatcctcaaggtgttcctc 71289
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>gb|AC113481.12| Mus musculus chromosome 12, clone RP23-310G22, complete sequence
          Length = 199650

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 46    agtggttttgttccttctgggcag 69
             |||||||||||| |||||||||||
Sbjct: 22482 agtggttttgtttcttctgggcag 22505
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>ref|XM_761394.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
            (TP01_0966) partial mRNA
          Length = 6234

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  cagatcagaatgcattacaa 279
            ||||||||||||||||||||
Sbjct: 5579 cagatcagaatgcattacaa 5598
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>gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete sequence
          Length = 123565

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tcagtttggtacttttcagc 166
             ||||||||||||||||||||
Sbjct: 37778 tcagtttggtacttttcagc 37759



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   tcagtttggtacttttcagc 166
             ||||||||||||||||||||
Sbjct: 18638 tcagtttggtacttttcagc 18619
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>gb|AC148764.16| Medicago truncatula clone mth2-30o12, complete sequence
          Length = 107371

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   atcacaatcagatcagaatg 271
             ||||||||||||||||||||
Sbjct: 50638 atcacaatcagatcagaatg 50619



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   atcacaatcagatcagaatg 271
             ||||||||||||||||||||
Sbjct: 48481 atcacaatcagatcagaatg 48462
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>ref|XM_964454.1| PREDICTED: Tribolium castaneum hypothetical protein LOC658041
            (LOC658041), mRNA
          Length = 2019

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  gttcctcagtttggtacttt 161
            ||||||||||||||||||||
Sbjct: 1210 gttcctcagtttggtacttt 1191
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>emb|BX571867.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              9/17
          Length = 336609

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     ttcttatatgctgcatcctcaagg 107
              |||||||||| |||||||||||||
Sbjct: 105646 ttcttatatgatgcatcctcaagg 105669
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>gb|AC066616.7| Homo sapiens chromosome 15 clone RP11-925D8 map 15q21.3, complete
              sequence
          Length = 209779

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    gtgttcctcagtttggtact 159
              ||||||||||||||||||||
Sbjct: 155876 gtgttcctcagtttggtact 155857
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>gb|AC111006.5| Homo sapiens BAC clone RP11-761E21 from 4, complete sequence
          Length = 123019

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   ctctggtgttcctcagtttg 154
             ||||||||||||||||||||
Sbjct: 66393 ctctggtgttcctcagtttg 66412
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>gb|AC160924.1| Medicago truncatula chromosome 7 BAC clone mte1-74g1, complete
            sequence
          Length = 98471

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  atcacaatcagatcagaatg 271
            ||||||||||||||||||||
Sbjct: 7724 atcacaatcagatcagaatg 7705



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  atcacaatcagatcagaatg 271
            ||||||||||||||||||||
Sbjct: 5567 atcacaatcagatcagaatg 5548
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>gb|AC084781.2|AC084781 Homo sapiens chromosome 15 clone RP11-355N15 map 15q21.3, complete
            sequence
          Length = 173386

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  gtgttcctcagtttggtact 159
            ||||||||||||||||||||
Sbjct: 6107 gtgttcctcagtttggtact 6088


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,776,462
Number of Sequences: 3902068
Number of extensions: 2776462
Number of successful extensions: 47281
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47228
Number of HSP's gapped (non-prelim): 53
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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