ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags26d11 |
|---|---|
| Clone Library Name | barley_pub |
>OCTN3_MOUSE (Q9WTN6) Organic cation/carnitine transporter 3 (Solute carrier| family 22 member 21) (Solute carrier family 22 member 9) Length = 564 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Frame = +3 Query: 234 FRRLASYAGFYSFTTLVTYAYTSNT---TRAGISRADQYYAAYPSGTELLTDTAKLYKAA 404 F +A + GF SF + + + T T G+ Y AA+ GTE+L+ + ++ A Sbjct: 174 FLTMAMHTGF-SFIQVFSVNFEMFTLLYTLVGMGHISNYVAAFVLGTEMLSKSVRIIFAT 232 Query: 405 LGNC 416 LG C Sbjct: 233 LGVC 236
>CYB_SIGHI (Q9XNU6) Cytochrome b| Length = 381 Score = 31.6 bits (70), Expect = 1.8 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +1 Query: 235 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIM 345 LGG L ++ SI L + P+L + +QGLVFR + I+ Sbjct: 288 LGGVLALILSILILAAFPLLNSSKQQGLVFRPITQIL 324
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 30.8 bits (68), Expect = 3.1 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Frame = +1 Query: 82 SLGESSKLPKSAALLFAVFIAATLLVRDYKGQAAVRWIFCICARMS*RFRSLGGWLLMLD 261 +L + P+ A L V + ATLLV QAA RW+ IC + LG L++L Sbjct: 24 ALNAGAIAPEGAVL---VAMLATLLVDLAGEQAAARWVPPIC------YAGLGTALVLLA 74 Query: 262 SIHSLPSLPMLTQAI---RQGLVFRGLISIMPPTLLVLSYSLTLQSFT 396 + P P A + FR ++++ L++S+ QS T Sbjct: 75 QQWNAPLEPSFLGAFLADNLAISFRAVVALSTLLSLLISWRYAEQSGT 122
>DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear| DNA helicase II) (NDH II) Length = 1301 Score = 30.4 bits (67), Expect = 4.0 Identities = 22/59 (37%), Positives = 24/59 (40%) Frame = +3 Query: 321 ISRADQYYAAYPSGTELLTDTAKLYKAALGNCFEIDDWGPIEFSIMAKHFDRQGKPPYA 497 IS + A P LLTD A + K N E DWGP S F Q PP A Sbjct: 1154 ISSEEFMSEAGPIKDSLLTDNALIQKGPAPNRLEYADWGP---SNNNSSFQNQDFPPAA 1209
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -2 Query: 104 SLLLSPRESAPSPAAGEQHLAPAAAGSGDP 15 ++++ P AP P G+ +P+AAGSG P Sbjct: 64 AVVIPPPSPAPEPRGGKAKRSPSAAGSGGP 93
>TMLH_NEUCR (Q96UB1) Trimethyllysine dioxygenase (EC 1.14.11.8)| (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD) Length = 471 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +3 Query: 210 KDVLKIQKFRRLASYAGFYSFTTLVTYAYTSNTTRAGISRADQYYAAYPSGTE 368 + +L+ F R+ Y GFY FT + A T+ T A + D Y P+G + Sbjct: 212 RQLLERIAFIRVTHYGGFYDFTPDLAMADTAYTNLALPAHTDTTYFTDPAGLQ 264
>ANI1_CAEEL (Q9XTT4) Anillin-like protein 1| Length = 1159 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = +3 Query: 267 SFTTLVTYAYTSNTTRAGISRADQYYAAYPSGTELLTDTAKLYKAALGNCFEIDDWGPIE 446 S TTL T + S +T +GIS A Q A+ + T T + L K + N + P Sbjct: 296 STTTLTTISGASGSTTSGISNAPQDSASTKTTTNTFTSSYLLTKTSNNNINALVSSSPKP 355 Query: 447 FS 452 FS Sbjct: 356 FS 357
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 101 LLLSPRESAPSPAAGEQHLAPAAAGSGDP 15 +++ P AP P G+ +P+AAGSG P Sbjct: 65 VVIPPPSPAPEPRGGKAKRSPSAAGSGGP 93
>CYB_AKOAE (P48517) Cytochrome b| Length = 379 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +1 Query: 235 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLLVLSYSLT 381 LGG L ++ SI L + P+L + + GL+FR + + TL+V LT Sbjct: 288 LGGVLALILSILILAAFPLLNTSKQHGLIFRPITQTIYWTLIVNLLVLT 336
>CYB_CLAFC (Q8SGQ9) Cytochrome b| Length = 392 Score = 29.6 bits (65), Expect = 6.9 Identities = 19/42 (45%), Positives = 26/42 (61%) Frame = +1 Query: 235 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLL 360 LGG L +L SI L +P+L + +QGL FR L I+ TL+ Sbjct: 288 LGGVLALLFSILVLMVVPLLHLSKQQGLTFRPLSQILFWTLV 329
>CYB_NEORH (Q8HLB9) Cytochrome b| Length = 380 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = +1 Query: 235 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLL 360 LGG L +L SI L +P+L + ++GL+FR L I+ TL+ Sbjct: 288 LGGVLALLASILILMVVPLLHTSKQRGLMFRPLTQILFWTLV 329
>CYB_ALLNG (Q8HLD2) Cytochrome b| Length = 380 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = +1 Query: 235 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLL 360 LGG L +L SI L +P+L + ++GL+FR L I+ TL+ Sbjct: 288 LGGVLALLASILILMVVPLLHTSKQRGLMFRPLTQILFWTLV 329
>FGD1_MOUSE (P52734) FYVE, RhoGEF and PH domain-containing protein 1| (Faciogenital dysplasia 1 protein homolog) (Zinc finger FYVE domain-containing protein 3) (Rho/Rac guanine nucleotide exchange factor FGD1) (Rho/Rac GEF) Length = 960 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = -3 Query: 106 GACCFRPESQRPRLPPENSTWRRLPRGQGIRCRFL 2 G C PE PP T +LP G+ RC FL Sbjct: 233 GPCPVPPEPAMLPQPPPQPTGSQLPEGEASRCLFL 267
>CYB_ANOCO (Q8HLR2) Cytochrome b| Length = 384 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = +1 Query: 235 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLL 360 LGG L +L SI L +P+L ++++GL FR L ++ TL+ Sbjct: 288 LGGVLALLFSILVLMVVPILHTSVQRGLTFRPLSQMLFWTLV 329
>PF2R_HUMAN (P43088) Prostaglandin F2-alpha receptor (Prostanoid FP receptor)| (PGF receptor) (PGF2 alpha receptor) Length = 359 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +1 Query: 100 KLPKSAALLFAVFIAATLLV--RDYKGQAAVRWIF 198 K+ S LFAVFIA ++ RDYK QA+ W F Sbjct: 153 KMMLSGVCLFAVFIALLPILGHRDYKIQASRTWCF 187
>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8| Length = 2413 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = +1 Query: 226 FRSLGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLLVLSYSLTLQSFTRPH 405 F WL + S + L +L +A++ +I + PT+ + SY L SFT Sbjct: 1989 FNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHL-WPSFTDEQ 2047 Query: 406 WVIV 417 W+ + Sbjct: 2048 WITI 2051
>CYB_MIRCO (Q34972) Cytochrome b| Length = 379 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 Query: 235 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLISIMPPTLLVLSYSLT 381 LGG L ++ SI L LP+L ++ +VFR IM TL ++LT Sbjct: 288 LGGVLALIMSILILAILPLLQTTKQRSMVFRPFSQIMFWTLTADLFTLT 336
>CYB_AKOTB (Q33887) Cytochrome b| Length = 379 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%) Frame = +1 Query: 235 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLIS----IMPPTLLVLSY 372 LGG L +L SI L + P+L + + GL+FR + I+ LLVL++ Sbjct: 288 LGGVLALLLSILILMAFPLLNTSKQHGLIFRPITQTIYWILIANLLVLTW 337
>CYB_AKODA (Q5QFW6) Cytochrome b| Length = 379 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%) Frame = +1 Query: 235 LGGWLLMLDSIHSLPSLPMLTQAIRQGLVFRGLIS----IMPPTLLVLSY 372 LGG L +L SI L + P+L + + GL+FR + I+ LLVL++ Sbjct: 288 LGGVLALLLSILILMAFPLLNTSKQHGLIFRPITQIIYWILIANLLVLTW 337 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,777,056 Number of Sequences: 219361 Number of extensions: 1505515 Number of successful extensions: 5363 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5362 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
