>GUC2C_RAT (P23897) Heat-stable enterotoxin receptor precursor (GC-C)|
           (Intestinal guanylate cyclase) (EC 4.6.1.2) (STA
           receptor)
          Length = 1072

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 516 IGIRLILFTPTACFVSSRITKLCLVGKYQIILL 614
           + +RL+LF PT  F +S++ + C  G Y+I +L
Sbjct: 7   LAVRLLLFQPTLMFWASQVRQKCHNGTYEISVL 39

>DNM3A_MOUSE (O88508) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)|
           (Dnmt3a) (DNA methyltransferase MmuIIIA) (DNA MTase
           MmuIIIA) (M.MmuIIIA)
          Length = 908

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 458 PGTRSVSTLEADEDREKDGSAENQCQNGGHRVRQRYSAAVLGIMRP 321
           PG  S S+LE ++DR++    E Q +N G   RQ  SA    + RP
Sbjct: 6   PGDTSSSSLEREDDRKE---GEEQEENRGKEERQEPSATARKVGRP 48

>POU23_BRARE (P79745) POU domain protein ZP-23|
          Length = 443

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 359 AGPCDLRSGTGFQHYHPSLGPHQ 427
           +G  DL SGT   H  P LGPHQ
Sbjct: 122 SGRDDLHSGTALHHRAPHLGPHQ 144

>FRQ_LEPAU (Q01115) Frequency clock protein|
          Length = 992

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -1

Query: 620 PV*QDNLVLAD*T*LGNSRTYEARSRRKQYQSDTDKRWANNF*NCNTTQILAVPPGTRSV 441
           P  +  ++ AD      SR  E+ S   Q Q+++  + AN+    NT+  +A PP  R  
Sbjct: 364 PAREARILPADNMKKSRSRDNESTSNSNQDQTESGGKTANSGSGSNTSPPIAPPPEQRPT 423

Query: 440 STLEADEDR 414
             L+ D  R
Sbjct: 424 RPLDLDPHR 432

>L_PI2HT (P26676) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2262

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 537 FTPTACFVSSRITKLCLVGKYQIILLHRKIHVCTPSNRQY 656
           F  +ACF+++ + K CL  +YQ I     IH     NR Y
Sbjct: 658 FELSACFITTDLAKYCLQWRYQTI-----IHFARTLNRMY 692


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,561,593
Number of Sequences: 219361
Number of extensions: 1748799
Number of successful extensions: 5101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5101
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)