ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags25o02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JI23_HORVU (P32024) 23 kDa jasmonate-induced protein 323 2e-88
2JIPH_ATRCA (P42764) Jasmonate-induced protein homolog 36 0.076
3TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (... 32 1.4
4WSC4_YEAST (P38739) Cell wall integrity and stress response comp... 31 1.9
5Y996_METJA (Q58403) Hypothetical protein MJ0996 30 5.5
6POT22_HUMAN (Q6S545) Prostate, ovary, testis expressed protein o... 29 7.2
7PRSA_BACHD (Q9KDN4) Foldase protein prsA precursor (EC 5.2.1.8) 29 7.2
8ACTY_DROME (P45891) Actin-like protein 53D 29 9.3
9PPCK_CORGL (Q9AEM1) Phosphoenolpyruvate carboxykinase [GTP] (EC ... 29 9.3
10TRPA_CLOAB (Q97EF6) Tryptophan synthase alpha chain (EC 4.2.1.20) 29 9.3
11FXL16_RAT (Q5MJ12) F-box/LRR-repeat protein 16 (F-box and leucin... 29 9.3
12ASO_TOBAC (Q40588) L-ascorbate oxidase precursor (EC 1.10.3.3) (... 29 9.3

>JI23_HORVU (P32024) 23 kDa jasmonate-induced protein|
          Length = 210

 Score =  323 bits (828), Expect = 2e-88
 Identities = 150/177 (84%), Positives = 155/177 (87%)
 Frame = +2

Query: 2   MASGVFGTPISEKTVIATGEYKEPITQKDVADYAMKMINAGGKDINALTFVDNLKERYGN 181
           MASGVFGTPIS +TVIATGEYKEPITQKDVADYAMKMINAGGKD+NA  FVDNLKERYGN
Sbjct: 1   MASGVFGTPISAQTVIATGEYKEPITQKDVADYAMKMINAGGKDVNAQKFVDNLKERYGN 60

Query: 182 GIAVKCLIYNATGATLSLAKYNDWHGHIYDTPYPSDIQNGQWGAFLHVHPXXXXXXXXXX 361
           GIAVKCL+YNATGATL+ AKYNDWHGHIYDTPYPSDIQNGQWGAFLHVHP          
Sbjct: 61  GIAVKCLLYNATGATLNFAKYNDWHGHIYDTPYPSDIQNGQWGAFLHVHPSGAAAGSAGA 120

Query: 362 XXYRTKIPSSSRSCDWLFSWTAPYIGDNGVYTEIREEGHYPSVGSWGYIYGVKLANS 532
             YR+KIPSSS SCDWLFSWT PYIG NGVYTEIREEGHYPSVGSW YIY VKL NS
Sbjct: 121 VVYRSKIPSSSSSCDWLFSWTVPYIGGNGVYTEIREEGHYPSVGSWDYIYNVKLKNS 177



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>JIPH_ATRCA (P42764) Jasmonate-induced protein homolog|
          Length = 185

 Score = 35.8 bits (81), Expect = 0.076
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
 Frame = +2

Query: 209 NATGATLSLAKYNDWHGHIYDTPYPSDIQNGQWGAFLHVHPXXXXXXXXXXXXYRTKIPS 388
           N T  +++  + ++W G +  T YP  I   Q   F+H               Y +   +
Sbjct: 43  NQTNVSMTFNENHNWSGSVVGTGYPKSIPTKQSRQFIH-QGDAKDGSQGAVVYYGSN--A 99

Query: 389 SSRSCDWLFSWTAPY----IGDNGVYTEIREEGHYPSVGSWGYI 508
           +   C WL +W AP        N VY +   +  + ++ SW  I
Sbjct: 100 NGEPCGWLLAWCAPTNVTPTKPNRVYVDCGAQSKFDTI-SWDTI 142



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>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)|
           (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite
           motif protein 33)
          Length = 1127

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 375 PRSPPAAGPAIGCSPGPPPTLVTT 446
           P S PA GP+ G  PGPP +L+ T
Sbjct: 101 PASAPAPGPSAGPPPGPPASLLDT 124



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>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4|
           precursor
          Length = 605

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 28/134 (20%), Positives = 49/134 (36%)
 Frame = +3

Query: 114 STPVVRILTH*PSSTISKSGTVTE*L*NASSTMPLVPL*AWLSTTIGTAISMIHPTHQIF 293
           +T   ++ T  P+ST S + T T     +SST   V + +  STT  T  S +  T    
Sbjct: 181 TTTSTKLSTSIPTSTTSSTSTTTS---TSSSTSTTVSVTSSTSTTTSTTSSTLISTSTSS 237

Query: 294 RMGNGVHSSTSTXXXXXXXXXXXXCIVPRSPPAAGPAIGCSPGPPPTLVTTGCTPKSVRK 473
              +   +++S                  SP ++      S   P +   T  +P +   
Sbjct: 238 SSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSSSAPTSSSNTTPTSTTFTTTSPSTAPS 297

Query: 474 DTTQVWEAGVISMV 515
            TT  + +   S +
Sbjct: 298 STTVTYTSTTASPI 311



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>Y996_METJA (Q58403) Hypothetical protein MJ0996|
          Length = 451

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 86  DVADYAMKMINAGGKDINALTF----VDNLKERYGNGIAVKCLIYNATGATLS 232
           +V DYA   IN G  + N +T     ++ +   +GNG+AV+ L  N  G   S
Sbjct: 12  EVGDYADIRINFG--ESNTITLKDGKIEEISSGFGNGVAVRVLYKNGWGFVTS 62



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>POT22_HUMAN (Q6S545) Prostate, ovary, testis expressed protein on chromosome 22|
          Length = 288

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 289 YSEWAMGCIPPRPPKWCCGWFSWCR 363
           + + AM  +  +  KWCC  F WCR
Sbjct: 49  HDDSAMKTLRSKMGKWCCHCFPWCR 73



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>PRSA_BACHD (Q9KDN4) Foldase protein prsA precursor (EC 5.2.1.8)|
          Length = 333

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 86  DVADYAMKMINAGGKDINALTFVDNLKERYGNGI 187
           D       ++   G +I+   FVD LKERYG  I
Sbjct: 24  DAGSSGQAVVEVDGHEISDAEFVDMLKERYGEAI 57



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>ACTY_DROME (P45891) Actin-like protein 53D|
          Length = 376

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -3

Query: 262 MAVPIVVLSQAQSGTSGIVDEAFYSYSVTVPLFE-IVDEG*CVNILTTGVDHLHGIVCNI 86
           +AV  V+   A   T GIV ++    + TVP++E       CV +   G D L   +C +
Sbjct: 139 VAVQAVLSLYATGRTVGIVVDSGDGVTHTVPIYEGFALPHACVRVDLAGRD-LTDYLCKL 197

Query: 85  LLSNGFLILTSGYHRLLR 32
           LL  G  + TS    ++R
Sbjct: 198 LLERGVTMGTSAEREIVR 215



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>PPCK_CORGL (Q9AEM1) Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 610

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 419 WTAPYIGDNGVYTEIREEGHY---PSVGSWGYIYGVKLANS 532
           WTA  +GD+  + ++RE+G Y   P  G +G   G   A++
Sbjct: 289 WTAQVVGDDIAWLKLREDGLYAVNPENGFFGVAPGTNYASN 329



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>TRPA_CLOAB (Q97EF6) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 263

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = -3

Query: 409 PIAGPAAGGDL------GTIHNGTS*TNRSTTWVDVEECTPLPILNI*WVGCIIDMAVPI 248
           P + P A G +      G ++NG    +      +V +   +PI+ + + GC+    +  
Sbjct: 54  PYSDPVADGPIIQISSSGALNNGLKIKDIMNMVKEVRKNVKIPIVYMGYFGCVFKYGLEK 113

Query: 247 VVLSQAQSGTSGIV 206
            +    +SG  GIV
Sbjct: 114 FIKDSKESGVDGIV 127



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>FXL16_RAT (Q5MJ12) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat|
           protein 16) (Spinal cord injury and regeneration-related
           protein 1)
          Length = 479

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = +3

Query: 384 PPAAGPAIGCSPGPP---PTLVT 443
           PPA+GPA G  PGPP   P L T
Sbjct: 75  PPASGPASGPVPGPPVERPPLAT 97



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>ASO_TOBAC (Q40588) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase)|
           (ASO)
          Length = 578

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
 Frame = +2

Query: 128 KDINALTFVDNLKERYGNGI-------AVKCLIYNATGATLSLAKYNDWHGHIYD 271
           KD + L    N    YGNG+        +  ++ NA      +++ + WH H +D
Sbjct: 426 KDYDVLKQAPNSNSTYGNGVYMLKFNTTIDIILQNANALAKDVSEIHPWHLHGHD 480


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,072,067
Number of Sequences: 219361
Number of extensions: 1906214
Number of successful extensions: 7826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7778
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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