ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags25o02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X98124.1|HVJIP H.vulgare gene encoding jasmonate-induced pro... 547 e-152
2gb|AC068051.7| Homo sapiens BAC clone RP11-172J1 from 2, complet... 44 0.46
3gb|AC096917.3| Homo sapiens chromosome 3 clone RP11-94D19, compl... 42 1.8
4gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region ... 42 1.8
5gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosom... 40 7.2
6gb|AC122009.2| Mus musculus BAC clone RP24-347B22 from 3, comple... 40 7.2
7gb|AC016717.8| Homo sapiens BAC clone RP11-314B1 from 2, complet... 40 7.2
8gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Ca... 40 7.2
9emb|AL953855.9| Zebrafish DNA sequence from clone CH211-239F4 in... 40 7.2
10dbj|AP005900.1| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 7.2
11dbj|AP005327.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.2
12dbj|AP005118.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.2 
>emb|X98124.1|HVJIP H.vulgare gene encoding jasmonate-induced protein
          Length = 2897

 Score =  547 bits (276), Expect = e-152
 Identities = 279/280 (99%)
 Strand = Plus / Plus

                                                                        
Query: 171  ggtacggtaacggaatagctgtaaaatgcctcatctacaatgccactggtgccactttga 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2305 ggtacggtaacggaatagctgtaaaatgcctcatctacaatgccactggtgccactttga 2364

                                                                        
Query: 231  gcttggctaagtacaacgattggcacggccatatctatgatacaccctacccatcagata 290
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2365 gcttggctaagtacaacgattggcacggccatatctatgatactccctacccatcagata 2424

                                                                        
Query: 291  ttcagaatgggcaatggggtgcattcctccacgtccacccaagtggtgctgcggttggtt 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425 ttcagaatgggcaatggggtgcattcctccacgtccacccaagtggtgctgcggttggtt 2484

                                                                        
Query: 351  cagctggtgccgttgtgtatcgtaccaagatcccctccagcagcaggtcctgcgattggt 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2485 cagctggtgccgttgtgtatcgtaccaagatcccctccagcagcaggtcctgcgattggt 2544

                                                    
Query: 411  tgttctcctggaccgccccctacattggtgacaacggggt 450
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2545 tgttctcctggaccgccccctacattggtgacaacggggt 2584



 Score =  343 bits (173), Expect = 4e-91
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    aatggcctcaggagtgtttggtacccccatttcggagaagacggtgatagccactggtga 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 aatggcctcaggagtgtttggtacccccatttcggagaagacggtgatagccactggtga 2065

                                                                        
Query: 61   gtataaggaacccattactcaaaaggatgttgcagactatgccatgaagatgatcaacgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 gtataaggaacccattactcaaaaggatgttgcagactatgccatgaagatgatcaacgc 2125

                                                                 
Query: 121  cggtggtaaggatattaacgcactaaccttcgtcgacaatctcaaagagcggt 173
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2126 cggtggtaaggatattaacgcactaaccttcgtcgacaatctcaaagagcggt 2178
to top
>gb|AC068051.7| Homo sapiens BAC clone RP11-172J1 from 2, complete sequence
          Length = 122076

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 283   atcagatattcagaatgggcaa 304
             ||||||||||||||||||||||
Sbjct: 72577 atcagatattcagaatgggcaa 72556
to top
>gb|AC096917.3| Homo sapiens chromosome 3 clone RP11-94D19, complete sequence
          Length = 170184

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    ctatgccatgaagatgatcaa 117
             |||||||||||||||||||||
Sbjct: 15554 ctatgccatgaagatgatcaa 15574
to top
>gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region FRA3B sequence
          Length = 185763

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     ctatgccatgaagatgatcaa 117
              |||||||||||||||||||||
Sbjct: 152410 ctatgccatgaagatgatcaa 152430
to top
>gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosome 3, complete sequence
          Length = 205029

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   agtgtgggaagctggggtta 504
             ||||||||||||||||||||
Sbjct: 29686 agtgtgggaagctggggtta 29705
to top
>gb|AC122009.2| Mus musculus BAC clone RP24-347B22 from 3, complete sequence
          Length = 152054

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 485   agtgtgggaagctggggtta 504
             ||||||||||||||||||||
Sbjct: 12050 agtgtgggaagctggggtta 12031
to top
>gb|AC016717.8| Homo sapiens BAC clone RP11-314B1 from 2, complete sequence
          Length = 210558

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 205   ctacaatgccactggtgccacttt 228
             |||||||||||||||| |||||||
Sbjct: 18137 ctacaatgccactggtcccacttt 18114
to top
>gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188972

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 106    gaagatgatcaacgccggtggtaa 129
              ||||||||||||||| ||||||||
Sbjct: 160083 gaagatgatcaacgctggtggtaa 160060
to top
>emb|AL953855.9| Zebrafish DNA sequence from clone CH211-239F4 in linkage group 1,
             complete sequence
          Length = 146080

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   tgtaaaatgcctcatctaca 209
             ||||||||||||||||||||
Sbjct: 15143 tgtaaaatgcctcatctaca 15124
to top
>dbj|AP005900.1| Homo sapiens genomic DNA, chromosome 18p clone:RP11-931H21, complete
             sequence
          Length = 215253

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ctggtgagtataaggaaccc 73
             ||||||||||||||||||||
Sbjct: 48601 ctggtgagtataaggaaccc 48620
to top
>dbj|AP005327.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-231N16, complete
             sequence
          Length = 161982

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ctggtgagtataaggaaccc 73
             ||||||||||||||||||||
Sbjct: 48600 ctggtgagtataaggaaccc 48619
to top
>dbj|AP005118.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-22C7, complete
              sequences
          Length = 166857

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ctggtgagtataaggaaccc 73
              ||||||||||||||||||||
Sbjct: 165368 ctggtgagtataaggaaccc 165387


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,481,170
Number of Sequences: 3902068
Number of extensions: 3481170
Number of successful extensions: 61705
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61687
Number of HSP's gapped (non-prelim): 18
length of query: 534
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 511
effective length of database: 17,143,297,704
effective search space: 8760225126744
effective search space used: 8760225126744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top