ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags26d01 |
|---|---|
| Clone Library Name | barley_pub |
>ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPase chain (EC| 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) Length = 1107 Score = 369 bits (948), Expect = e-102 Identities = 184/197 (93%), Positives = 191/197 (96%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCRIDG+TGG+DRDASI+AFNKPGSEKFVFLLSTRAGGLGINLATADVV+LYDSDWNPQA Sbjct: 575 YCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQA 634 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRL+ QKTVNK Sbjct: 635 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNK 694 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMDDT 565 DDLLQMVRFGAEMVFSSKDSTITDED+DRIIAKGEET A LDAKMKKFTEDAIKFKMDDT Sbjct: 695 DDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEETTAELDAKMKKFTEDAIKFKMDDT 754 Query: 566 AELYDFDGDKEEDNADF 616 AELYDFD DKEE+ DF Sbjct: 755 AELYDFDDDKEENKLDF 771
>ISW2_ARATH (Q8RWY3) Putative chromatin remodelling complex ATPase chain (EC| 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) Length = 1057 Score = 339 bits (869), Expect = 4e-93 Identities = 172/200 (86%), Positives = 186/200 (93%), Gaps = 3/200 (1%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCRIDG+TGGD+RDASI+A+NKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQ Sbjct: 533 YCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQV 592 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ--KTV 379 DLQAQDRAHRIGQKKEVQVFRFCTE IEEKVIERAYKKLALDALVIQQGRL+ Q K+V Sbjct: 593 DLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAYKKLALDALVIQQGRLAEQKSKSV 652 Query: 380 NKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMD 559 NKD+LLQMVR+GAEMVFSSKDSTITDED+DRIIAKGEE A LDAKMKKFTEDAI+FKMD Sbjct: 653 NKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIQFKMD 712 Query: 560 DTAELYDFDGD-KEEDNADF 616 D+A+ YDFD D K+E+ DF Sbjct: 713 DSADFYDFDDDNKDENKLDF 732
>SMCA5_MOUSE (Q91ZW3) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 5 (EC 3.6.1.-) (Sucrose nonfermenting protein 2 homolog) (mSnf2h) Length = 1051 Score = 231 bits (590), Expect = 1e-60 Identities = 114/192 (59%), Positives = 149/192 (77%), Gaps = 3/192 (1%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCR+DG T D+R SI+A+N+P S KFVF+LSTRAGGLGINLATADVVILYDSDWNPQ Sbjct: 525 YCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 584 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ--KTV 379 DLQA DRAHRIGQ K V+VFRF T+ T+EE+++ERA KL LD++VIQQGRL Q + Sbjct: 585 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKI 644 Query: 380 NKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIK-FKM 556 KD++LQM+R GA VF+SK+S ITDED+D I+ +G + A ++ K+ K E +++ F M Sbjct: 645 GKDEMLQMIRHGATHVFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTM 704 Query: 557 DDTAELYDFDGD 592 D + +Y+F+G+ Sbjct: 705 DTESSVYNFEGE 716
>SMCA5_HUMAN (O60264) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 5 (EC 3.6.1.-) (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2 Length = 1052 Score = 231 bits (590), Expect = 1e-60 Identities = 114/192 (59%), Positives = 149/192 (77%), Gaps = 3/192 (1%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCR+DG T D+R SI+A+N+P S KFVF+LSTRAGGLGINLATADVVILYDSDWNPQ Sbjct: 526 YCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQV 585 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ--KTV 379 DLQA DRAHRIGQ K V+VFRF T+ T+EE+++ERA KL LD++VIQQGRL Q + Sbjct: 586 DLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKI 645 Query: 380 NKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIK-FKM 556 KD++LQM+R GA VF+SK+S ITDED+D I+ +G + A ++ K+ K E +++ F M Sbjct: 646 GKDEMLQMIRHGATHVFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTM 705 Query: 557 DDTAELYDFDGD 592 D + +Y+F+G+ Sbjct: 706 DTESSVYNFEGE 717
>ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain isw-1 (EC| 3.6.1.-) Length = 1009 Score = 229 bits (583), Expect = 6e-60 Identities = 113/193 (58%), Positives = 152/193 (78%), Gaps = 4/193 (2%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCR+DGST +DR +I+A+N P S+KF+F+L+TRAGGLGINLATADVVI+YDSDWNPQ+ Sbjct: 478 YCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQS 537 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLS-GQKTVN 382 DLQA DRAHRIGQKK+V+VFR TE T++E++IE+A KL LD +VIQQGR+S QKT+ Sbjct: 538 DLQAMDRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLG 597 Query: 383 KDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIK-FKMD 559 K D++ M+R GAE VF++KDSTI+D+D+D I+ K E A L+ KM K E+ ++ + Sbjct: 598 KGDMISMIRHGAEQVFAAKDSTISDDDIDTILEKAEVKTAELNEKMGKIDENNLRNMTFE 657 Query: 560 DTAE--LYDFDGD 592 D A+ +Y F+G+ Sbjct: 658 DNAKFTVYQFEGE 670
>ISWI_DROME (Q24368) Chromatin remodelling complex ATPase chain Iswi (EC 3.6.1.-)| (Protein imitation swi) (Nucleosome remodeling factor 140 kDa subunit) (NURF-140) (CHRAC 140 kDa subunit) Length = 1027 Score = 216 bits (551), Expect = 3e-56 Identities = 111/197 (56%), Positives = 143/197 (72%), Gaps = 8/197 (4%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCR+DG T +DR+ I FN S KF+F+LSTRAGGLGINLATADVVI+YDSDWNPQ Sbjct: 474 YCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQM 533 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKT--V 379 DLQA DRAHRIGQKK+V+VFR TE T+EEK++ERA KL LD +VIQ GRL ++ + Sbjct: 534 DLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQL 593 Query: 380 NKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIK-FKM 556 NKD++L ++RFGA VFSSK++ ITDED+D I+ +GE A A + E +++ F M Sbjct: 594 NKDEMLNIIRFGANQVFSSKETDITDEDIDVILERGEAKTAEQKAALDSLGESSLRTFTM 653 Query: 557 D-----DTAELYDFDGD 592 D T+ +Y F+G+ Sbjct: 654 DTNGEAGTSSVYQFEGE 670
>SMCA1_HUMAN (P28370) Probable global transcription activator SNF2L1 (EC 3.6.1.-)| (ATP-dependent helicase SMARCA1) (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1) Length = 976 Score = 216 bits (551), Expect = 3e-56 Identities = 109/204 (53%), Positives = 151/204 (74%), Gaps = 15/204 (7%) Frame = +2 Query: 26 YCRIDGSTGGDDRD------------ASIDAFNKPGSEKFVFLLSTRAGGLGINLATADV 169 YCR+DG T ++R+ +I+AFN P S KF+F+LSTRAGGLGINLA+ADV Sbjct: 451 YCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADV 510 Query: 170 VILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 349 VILYDSDWNPQ DLQA DRAHRIGQKK V+VFR T+ T+EE+++ERA KL LD++VIQ Sbjct: 511 VILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 570 Query: 350 QGRLSGQKT--VNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMK 523 QGRL Q++ + K+++LQM+R GA VF+SK+S +TDED+ I+ +GE+ A ++ +++ Sbjct: 571 QGRLIDQRSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQ 630 Query: 524 KFTEDAIK-FKMDDTAELYDFDGD 592 K E +++ F+MD LY F+G+ Sbjct: 631 KMGESSLRNFRMDIEQSLYKFEGE 654
>ISW1_YEAST (P38144) Chromatin remodelling complex ATPase chain ISW1 (EC 3.6.1.-)| Length = 1129 Score = 193 bits (490), Expect = 4e-49 Identities = 108/200 (54%), Positives = 134/200 (67%), Gaps = 18/200 (9%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCRIDGST +DR +ID +N P S+KFVFLL+TRAGGLGINL +ADVV+LYDSDWNPQA Sbjct: 545 YCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQA 604 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVN- 382 DLQA DRAHRIGQKK+V+VFR T+ ++EEK++ERA +KL LD LVIQQ R S +K N Sbjct: 605 DLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKKENK 664 Query: 383 ---KDDLLQMVRFGAEMVFSSKDSTIT-------------DEDVDRIIAKGEETKAALDA 514 KD LL M++ GA VF S ST + D D+D ++ K E +L+A Sbjct: 665 ADSKDALLSMIQHGAADVFKSGTSTGSAGTPEPGSGEKGDDIDLDELLLKSENKTKSLNA 724 Query: 515 KMKKF-TEDAIKFKMDDTAE 571 K + +D KF D E Sbjct: 725 KYETLGLDDLQKFNQDSAYE 744
>CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 (EC 3.6.1.-)| (ATP-dependent helicase CHD2) (CHD-2) Length = 1739 Score = 161 bits (407), Expect = 2e-39 Identities = 96/220 (43%), Positives = 140/220 (63%), Gaps = 18/220 (8%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 190 I+ + R+DGS G+ R ++D FN GSE F FLLSTRAGGLGINLA+AD V+++DSD Sbjct: 829 IKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSD 888 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQ----GR 358 WNPQ DLQAQ RAHRIGQKK+V ++R T+ T+EE++IERA KK+ LD LVIQ+ GR Sbjct: 889 WNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 948 Query: 359 L--------SGQKTVNKDDLLQMVRFGAEMVF---SSKDSTITDEDVDRI--IAKGEETK 499 S NK++L +++FGAE +F ++S + D+D I +A+ E + Sbjct: 949 TILENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETRENE 1008 Query: 500 AALDAKMKKFTEDAI-KFKMDDTAELYDFDGDKEEDNADF 616 + A T++ + +FK+ + A + D + +E + D+ Sbjct: 1009 VSTSA-----TDELLSQFKVANFATMEDEEELEERPHKDW 1043
>SNF2_YEAST (P22082) Transcription regulatory protein SNF2 (EC 3.6.1.-)| (ATP-dependent helicase SNF2) (SWI/SNF complex component SNF2) (Regulatory protein SWI2) (Regulatory protein GAM1) (Transcription factor TYE3) Length = 1703 Score = 157 bits (397), Expect = 2e-38 Identities = 84/198 (42%), Positives = 119/198 (60%), Gaps = 11/198 (5%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 + Y R+DG T D+R + FN P SE F+LSTRAGGLG+NL TAD VI++D+DWNP Sbjct: 1128 IKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNP 1187 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTV 379 DLQAQDRAHRIGQK EV++ R T ++EE ++ERAYKKL +D VIQ G+ + T Sbjct: 1188 HQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTS 1247 Query: 380 NKDDLLQMVRFGAEMVFSSK-------DSTITDEDVDRIIAKGEETKAAL----DAKMKK 526 + + L AE K + + D +++ I+A+ +E A L + + KK Sbjct: 1248 EEQEALLRSLLDAEEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRMDEDRSKK 1307 Query: 527 FTEDAIKFKMDDTAELYD 580 E +K ++ + +EL D Sbjct: 1308 EEELGVKSRLLEKSELPD 1325
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 155 bits (393), Expect = 7e-38 Identities = 84/169 (49%), Positives = 115/169 (68%), Gaps = 16/169 (9%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 R+DGS G+ R ++D FN GSE F FLLSTRAGGLGINLA+AD V+++DSDWNPQ DL Sbjct: 833 RLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDL 892 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTV---- 379 QAQ RAHRIGQKK+V ++R T+ ++EE ++ERA KK+ LD LVIQ+ +G KTV Sbjct: 893 QAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTG-KTVLHTG 951 Query: 380 ---------NKDDLLQMVRFGAEMVF---SSKDSTITDEDVDRIIAKGE 490 NK++L +++FGAE +F ++ + D+D I+ + E Sbjct: 952 SAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAE 1000
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 155 bits (393), Expect = 7e-38 Identities = 84/169 (49%), Positives = 115/169 (68%), Gaps = 16/169 (9%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 R+DGS G+ R ++D FN GSE F FLLSTRAGGLGINLA+AD V+++DSDWNPQ DL Sbjct: 831 RLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDL 890 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTV---- 379 QAQ RAHRIGQKK+V ++R T+ ++EE ++ERA KK+ LD LVIQ+ +G KTV Sbjct: 891 QAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTG-KTVLHTG 949 Query: 380 ---------NKDDLLQMVRFGAEMVF---SSKDSTITDEDVDRIIAKGE 490 NK++L +++FGAE +F ++ + D+D I+ + E Sbjct: 950 SAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAE 998
>CHD3_CAEEL (Q22516) Chromodomain helicase-DNA-binding protein 3 homolog (CHD-3)| Length = 1787 Score = 155 bits (392), Expect = 9e-38 Identities = 85/199 (42%), Positives = 126/199 (63%), Gaps = 2/199 (1%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 190 ++ Y RIDGS G R +ID +N PG+++FVFLLSTRAGGLGINLATAD VI+YDSD Sbjct: 978 VEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSD 1037 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQG-RLSG 367 WNP D+QA RAHR+GQK +V ++RF T+ ++EE++ A KK+ L LV++ G Sbjct: 1038 WNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVRAGLGAKD 1097 Query: 368 QKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTED-AI 544 K+++K +L ++R+G E +F +++ + D GE T + + + +D A+ Sbjct: 1098 GKSMSKTELDDVLRWGTEELFKEEEAPVEGAD-------GEGTSSKKPNEQEIVWDDAAV 1150 Query: 545 KFKMDDTAELYDFDGDKEE 601 F +D E DG+K+E Sbjct: 1151 DFLLDRNKEEEGQDGEKKE 1169
>CHD3_DROME (O16102) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)| (ATP-dependent helicase Chd3) Length = 892 Score = 155 bits (391), Expect = 1e-37 Identities = 87/197 (44%), Positives = 117/197 (59%), Gaps = 6/197 (3%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y RIDGS GD R +ID FN P SE FVFLLSTRAGGLGINLATAD VI++DSDWNP Sbjct: 629 YDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHN 688 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D+QA RAHR+GQKK+V ++RF T ++EE++++ A K+ L LV++ G +K Sbjct: 689 DVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSK 748 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKM--- 556 D+L ++RFG E +F S D + + T ++ K E FK+ Sbjct: 749 DELEDILRFGTEDLFKDGKSEAIHYDDKAVADLLDRTNRGIEEKESWANEYLSSFKVASY 808 Query: 557 ---DDTAELYDFDGDKE 598 +D E D++ D E Sbjct: 809 ATKEDHEEHDDYNNDAE 825
>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)| (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen 218 kDa protein) (Mi2-beta) Length = 1912 Score = 150 bits (379), Expect = 3e-36 Identities = 83/207 (40%), Positives = 127/207 (61%), Gaps = 15/207 (7%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y RIDG G+ R +ID FN PG+++F FLLSTRAGGLGINLATAD VI+YDSDWNP Sbjct: 1093 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1152 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D+QA RAHRIGQ K+V ++RF T ++EE++ + A KK+ L LV++ G S +++K Sbjct: 1153 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSK 1212 Query: 386 DDLLQMVRFGAEMVF------------SSKDSTI---TDEDVDRIIAKGEETKAALDAKM 520 +L +++FG E +F +DS++ D+ ++R++ + ++ D ++ Sbjct: 1213 QELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETE--DTEL 1270 Query: 521 KKFTEDAIKFKMDDTAELYDFDGDKEE 601 + E FK+ + G++EE Sbjct: 1271 QGMNEYLSSFKVAQYVVREEEMGEEEE 1297
>CHD4_MOUSE (Q6PDQ2) Chromodomain helicase-DNA-binding protein 4 (CHD-4)| Length = 1915 Score = 150 bits (379), Expect = 3e-36 Identities = 83/207 (40%), Positives = 127/207 (61%), Gaps = 15/207 (7%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y RIDG G+ R +ID FN PG+++F FLLSTRAGGLGINLATAD VI+YDSDWNP Sbjct: 1086 YERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1145 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D+QA RAHRIGQ K+V ++RF T ++EE++ + A KK+ L LV++ G S +++K Sbjct: 1146 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSK 1205 Query: 386 DDLLQMVRFGAEMVF------------SSKDSTI---TDEDVDRIIAKGEETKAALDAKM 520 +L +++FG E +F +DS++ D+ ++R++ + ++ D ++ Sbjct: 1206 QELDDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETE--DTEL 1263 Query: 521 KKFTEDAIKFKMDDTAELYDFDGDKEE 601 + E FK+ + G++EE Sbjct: 1264 QGMNEYLSSFKVAQYVVREEEMGEEEE 1290
>CHD1_YEAST (P32657) Chromo domain protein 1 (EC 3.6.1.-) (ATP-dependent helicase| CHD1) Length = 1468 Score = 150 bits (378), Expect = 4e-36 Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 7/168 (4%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 190 I+ + + R+DG+ R SID FN P S FVFLLSTRAGGLGINL TAD V+++DSD Sbjct: 733 IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSD 792 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ 370 WNPQADLQA RAHRIGQK V V+R ++ T+EE+V+ERA KK+ L+ +I G G Sbjct: 793 WNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGN 852 Query: 371 KTVNKD-----DLLQMVRFGAEMVFSSKDS--TITDEDVDRIIAKGEE 493 K K+ +L +++FGA +F++ D+ + D ++D ++ E+ Sbjct: 853 KYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAED 900
>PKL_ARATH (Q9S775) CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-)| (Protein GYMNOS) Length = 1384 Score = 149 bits (376), Expect = 6e-36 Identities = 83/182 (45%), Positives = 115/182 (63%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y RIDG GG +R ID FN S KF FLLSTRAGGLGINLATAD VI+YDSDWNP A Sbjct: 638 YERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA 697 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 DLQA RAHR+GQ +V ++R TIEE++++ KK+ L+ LV+ G+L Q +N+ Sbjct: 698 DLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVV--GKLKTQ-NINQ 754 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMDDT 565 ++L ++R+G++ +F+S+D D K AA+D + + +A + +DD Sbjct: 755 EELDDIIRYGSKELFASED------DEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSVDDE 808 Query: 566 AE 571 E Sbjct: 809 EE 810
>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC 3.6.1.-)| (ATP-dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matrix associated actin dependent regulator of chromatin subfamily A member 2) (hBRM) Length = 1586 Score = 148 bits (373), Expect = 1e-35 Identities = 74/156 (47%), Positives = 102/156 (65%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T +DR A + FN+PGS+ F+FLLSTRAGGLG+NL AD V+++DSDWNP Sbjct: 1089 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1148 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 DLQAQDRAHRIGQ+ EV+V R CT ++EEK++ A KL +D VIQ G + + ++ Sbjct: 1149 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1208 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEE 493 E +D DE ++++IA+ EE Sbjct: 1209 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREE 1244
>CHD3_HUMAN (Q12873) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)| (ATP-dependent helicase CHD3) (CHD-3) (Mi-2 autoantigen 240 kDa protein) (Mi2-alpha) (Zinc-finger helicase) (hZFH) Length = 2000 Score = 147 bits (372), Expect = 2e-35 Identities = 77/171 (45%), Positives = 110/171 (64%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y RIDG G R +ID FN PG+++F FLLSTRAGGLGINLATAD VI++DSDWNP Sbjct: 1103 YERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHN 1162 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D+QA RAHRIGQ +V ++RF T ++EE++ + A +K+ L LV++ G S +++K Sbjct: 1163 DIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSK 1222 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTED 538 +L +++FG E +F ++ E+ +I E A L + + TED Sbjct: 1223 QELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATED 1273
>SNF21_SCHPO (Q9UTN6) SNF2-family ATP dependent chromatin remodeling factor snf21| (EC 3.6.1.-) (ATP-dependent helicase snf21) Length = 1199 Score = 147 bits (372), Expect = 2e-35 Identities = 78/173 (45%), Positives = 107/173 (61%), Gaps = 2/173 (1%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DGST DDR + FN P +E +FLLSTRAGGLG+NL TAD VI++DSDWNP Sbjct: 779 YLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQ 838 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 DLQAQDRAHRIGQ KEV+++R TE ++EE ++ RA KL +D VIQ G+ + T + Sbjct: 839 DLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEE 898 Query: 386 DDLLQMVRFGAEMVFSSKD--STITDEDVDRIIAKGEETKAALDAKMKKFTED 538 + E D + D++++ I+A+G++ K+ TED Sbjct: 899 REAFLRSLLENENGEEENDEKGELDDDELNEILARGDDELRL----FKQMTED 947
>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2 homolog (EC| 3.6.1.-) (ATP-dependent helicase Mi-2) (dMi-2) Length = 1982 Score = 147 bits (371), Expect = 2e-35 Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 1/197 (0%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 ++ Y RIDG G R +ID FN PG+++FVFLLSTRAGGLGINLATAD VI+YDSDW Sbjct: 1091 EQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDW 1150 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQK 373 NP D+QA RAHRIGQ +V ++RF T ++EE+V + A +K+ L LV++ G Sbjct: 1151 NPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGA 1210 Query: 374 TVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAK-GEETKAALDAKMKKFTEDAIKF 550 K +L ++RFG E +F D D+ +A+ + T ++ K E F Sbjct: 1211 NFTKQELDDILRFGTEDLFKEDDKEEAIHYDDKAVAELLDRTNRGIEEKESWANEYLSSF 1270 Query: 551 KMDDTAELYDFDGDKEE 601 K+ A + + ++ E Sbjct: 1271 KVASYATKEEEEEEETE 1287
>HRP3_SCHPO (O14139) Chromodomain helicase hrp3 (EC 3.6.1.-) (ATP-dependent| helicase hrp3) Length = 1388 Score = 147 bits (371), Expect = 2e-35 Identities = 88/209 (42%), Positives = 120/209 (57%), Gaps = 18/209 (8%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 R+DG+ R SID FN P S FVFLLSTRAGGLGINL TAD VI++DSDWNPQADL Sbjct: 735 RLDGTVPAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADL 794 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKD- 388 QA RAHRIGQK V V+R ++ TIEE V+ERA +K+ L+ +I G QK D Sbjct: 795 QAMARAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAIISLGVTDKQKNSKNDK 854 Query: 389 ----DLLQMVRFGAEMVFSSKDS--TITDEDVDRIIAKGEETKAALDA-----------K 517 +L +++FGA +F ++++ + D ++D I+ E+ + D K Sbjct: 855 FSAEELSAILKFGASNMFKAENNQKKLEDMNLDEILEHAEDHDTSNDVGGASMGGEEFLK 914 Query: 518 MKKFTEDAIKFKMDDTAELYDFDGDKEED 604 + T+ DD L + + +EED Sbjct: 915 QFEVTDYKADVSWDDIIPLTEREKFEEED 943
>CHD5_HUMAN (Q8TDI0) Chromodomain helicase-DNA-binding protein 5 (EC 3.6.1.-)| (ATP-dependent helicase CHD5) (CHD-5) Length = 1954 Score = 147 bits (370), Expect = 3e-35 Identities = 74/155 (47%), Positives = 106/155 (68%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y RIDG G R +ID FN PG+++F FLLSTRAGGLGINLATAD VI+YDSDWNP Sbjct: 1067 YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHN 1126 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D+QA RAHRIGQ K+V ++RF T ++EE++ + A +K+ L LV++ G S ++ K Sbjct: 1127 DIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTK 1186 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGE 490 +L +++FG E +F +DV+ ++++G+ Sbjct: 1187 QELDDILKFGTEELFK--------DDVEGMMSQGQ 1213
>CHD9_MOUSE (Q8BYH8) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein) (PPAR-alpha-interacting complex protein 320 kDa) Length = 2885 Score = 146 bits (369), Expect = 4e-35 Identities = 80/169 (47%), Positives = 109/169 (64%), Gaps = 8/169 (4%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +R Y RIDG G+ R A+ID F+KP S++FVFLL TRAGGLGINL AD I++DSDW Sbjct: 1220 KRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDW 1279 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ-----QGR 358 NPQ DLQAQ R HRIGQ K V+V+R T + E ++ +RA KL LD V+Q Sbjct: 1280 NPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRDSN 1339 Query: 359 LSGQKTVNK---DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEET 496 +SG + ++K +DLL+ +GA M + S +ED+D+I+ + +T Sbjct: 1340 VSGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRTKT 1388
>STH1_YEAST (P32597) Nuclear protein STH1/NPS1 (EC 3.6.1.-) (ATP-dependent| helicase STH1) (Chromatin structure remodeling complex protein STH1) (SNF2 homolog) Length = 1359 Score = 146 bits (369), Expect = 4e-35 Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 1/163 (0%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DGST ++R ++AFN P S+ F FLLSTRAGGLG+NL TAD VI++D+DWNP Sbjct: 834 YMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQ 893 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 DLQAQDRAHRIGQK EV++ R T ++EE ++ERA +KL +D VIQ G+ + T + Sbjct: 894 DLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEE 953 Query: 386 DDLLQMVRFGAEMVFSSKD-STITDEDVDRIIAKGEETKAALD 511 + +E D + + D++++ +A+ + K D Sbjct: 954 QEAFLRRLIESETNRDDDDKAELDDDELNDTLARSADEKILFD 996
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 145 bits (367), Expect = 7e-35 Identities = 79/169 (46%), Positives = 109/169 (64%), Gaps = 8/169 (4%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +R Y RIDG G+ R A+ID F+KP S++FVFLL TRAGGLGINL AD I++DSDW Sbjct: 1221 KRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDW 1280 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ-----QGR 358 NPQ DLQAQ R HRIGQ K V+V+R T + E ++ +RA KL LD V+Q + Sbjct: 1281 NPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESN 1340 Query: 359 LSGQKTVNK---DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEET 496 + G + ++K +DLL+ +GA M + S +ED+D+I+ + +T Sbjct: 1341 VGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRTKT 1389
>HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1 (EC 3.6.1.-) (ATP-dependent| helicase hrp1) Length = 1373 Score = 145 bits (366), Expect = 9e-35 Identities = 78/169 (46%), Positives = 109/169 (64%), Gaps = 7/169 (4%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+ R SID FN P S FVFLLSTRAGGLGINL TAD VI++DSDWNPQA Sbjct: 747 YQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQA 806 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 DLQA RAHRIGQK V V+RF ++ T+EE ++ERA +K+ L+ +I G K Sbjct: 807 DLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAIISLGVTEKSKNSKN 866 Query: 386 D-----DLLQMVRFGAEMVFSSKDS--TITDEDVDRIIAKGEETKAALD 511 D +L +++FGA +F + ++ + + ++D I++ E+ ++ D Sbjct: 867 DKYDAQELSAILKFGASNMFKATENQKKLENMNLDDILSHAEDRDSSND 915
>SNF22_SCHPO (O94421) SNF2-family ATP dependent chromatin remodeling factor snf22| (EC 3.6.1.-) (ATP-dependent helicase snf22) Length = 1680 Score = 144 bits (364), Expect = 2e-34 Identities = 72/158 (45%), Positives = 104/158 (65%), Gaps = 2/158 (1%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DGST DDR + + FN P S+ ++F+LSTRAGGLG+NL TAD VI++D+DWNP Sbjct: 1230 YLRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQ 1289 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 DLQAQDRAHRIGQ KEV++ R TE +IEE ++ RA KL LD VIQ G+ + T + Sbjct: 1290 DLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEE 1349 Query: 386 DD--LLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEE 493 + L ++ + + D++++ +I++ +E Sbjct: 1350 REAFLRSLLEHDGDDDHDLTYGELQDDELNELISRTDE 1387
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent helicase| brm) (Protein brahma) Length = 1638 Score = 144 bits (363), Expect = 2e-34 Identities = 85/201 (42%), Positives = 121/201 (60%), Gaps = 9/201 (4%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T +DR + FN GS+ FVFLLSTRAGGLG+NL TAD V+++DSDWNP Sbjct: 1141 YLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQ 1200 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKT-VN 382 DLQAQDRAHRIGQ+ EV+V R T ++EE+++ A KL +D VIQ G + T Sbjct: 1201 DLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSE 1260 Query: 383 KDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGE---ETKAALDAKMKKFTEDAI--K 547 + LQ + + ++ DE ++ +IA+ E E +DA+ KK E+ + Sbjct: 1261 RQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIEIFKRMDAERKKEDEEIHPGR 1320 Query: 548 FKMDDTAELYDF---DGDKEE 601 ++ D +EL D+ D D+ E Sbjct: 1321 ERLIDESELPDWLTKDDDEVE 1341
>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)| (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced gene B protein) Length = 2715 Score = 144 bits (363), Expect = 2e-34 Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 7/168 (4%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +R Y RIDG G+ R A+ID F KP S++FVFLL TRAGGLGINL AD I++DSDW Sbjct: 822 RRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDW 881 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ----QGRL 361 NPQ DLQAQ R HRIGQ K V+V+R T + E ++ ++A KL LD V+Q +G Sbjct: 882 NPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGT 941 Query: 362 SGQKTVNK---DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEET 496 +G + ++K +DLL+ +GA M + S +ED+D+I+ + T Sbjct: 942 NGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTHT 989
>CHD8_HUMAN (Q9HCK8) Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-)| (ATP-dependent helicase CHD8) (CHD-8) (Helicase with SNF2 domain 1) Length = 2302 Score = 144 bits (362), Expect = 3e-34 Identities = 77/169 (45%), Positives = 107/169 (63%), Gaps = 8/169 (4%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +R Y RIDG G+ R A+ID F+KP S++FVFLL TRAGGLGINL AD I++DSDW Sbjct: 893 RRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDW 952 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ-----QGR 358 NPQ DLQAQ R HRIGQ K V+V+R T + E ++ ++A KL LD V+Q G Sbjct: 953 NPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGN 1012 Query: 359 LSGQKTVNKDDLLQMVRFGAEMVFSSKD---STITDEDVDRIIAKGEET 496 ++G + +K ++ ++R GA +D S +ED+D+I+ + T Sbjct: 1013 ITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTT 1061
>CHD7_HUMAN (Q9P2D1) Chromodomain-helicase-DNA-binding protein 7 (EC 3.6.1.-)| (ATP-dependent helicase CHD7) (CHD-7) (Fragment) Length = 2235 Score = 143 bits (360), Expect = 5e-34 Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 8/169 (4%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +R Y RIDG G+ R A+ID F+KP S++FVFLL TRAGGLGINL AD I++DSDW Sbjct: 567 RRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDW 626 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ-----QGR 358 NPQ DLQAQ R HRIGQ K V+++R T + E ++ ++A KL LD V+Q + Sbjct: 627 NPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 686 Query: 359 LSGQKTVNK---DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEET 496 +G + ++K +DLL+ +GA M + S +ED+D+I+ + T Sbjct: 687 TNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHT 735
>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC 3.6.1.-)| (ATP-dependent helicase SMARCA4) (SNF2-beta) (BRG-1 protein) (Mitotic growth and transcription activator) (Brahma protein homolog 1) (SWI/SNF-related matrix-associated actin Length = 1647 Score = 142 bits (357), Expect = 1e-33 Identities = 67/110 (60%), Positives = 84/110 (76%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T +DR + FN+PGSE F+FLLSTRAGGLG+NL +AD VI++DSDWNP Sbjct: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQG 355 DLQAQDRAHRIGQ+ EV+V R CT ++EEK++ A KL +D VIQ G Sbjct: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG 1232
>SWR1_CANAL (Q59U81) Helicase SWR1 (EC 3.6.1.-)| Length = 1641 Score = 128 bits (321), Expect = 2e-29 Identities = 77/182 (42%), Positives = 109/182 (59%), Gaps = 6/182 (3%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T +DR + FN+ VF+LSTR+GGLGINL AD VI YDSDWNP Sbjct: 1409 YMRLDGATKIEDRQLLTEKFNRDPKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPAM 1467 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLS----GQK 373 D Q QDR HRIGQ ++V ++RF +EYTIE +I++A +K LD +VIQ+G + G+ Sbjct: 1468 DKQCQDRCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKF 1527 Query: 374 TVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKG--EETKAALDAKMKKFTEDAIK 547 +V DL+ G E+ + D + D + ++A+ EE + A A +K+ D Sbjct: 1528 SVR--DLVSDSNIGKEITDRTIDFS-GDAKMGNVLAQAEDEEDRVAAGAALKEVAIDDDD 1584 Query: 548 FK 553 FK Sbjct: 1585 FK 1586
>SWR1_DEBHA (Q6BKC2) Helicase SWR1 (EC 3.6.1.-)| Length = 1616 Score = 127 bits (318), Expect = 3e-29 Identities = 72/173 (41%), Positives = 104/173 (60%), Gaps = 11/173 (6%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T +DR + FN+ S+ VF+LSTR+GGLGINL AD VI YDSDWNP Sbjct: 1375 YMRLDGATKIEDRQLLTEKFNRD-SKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAM 1433 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQ--------GRL 361 D Q QDR HRIGQ ++V ++RF +EYTIE ++ +A +K LD +VIQ+ G+ Sbjct: 1434 DKQCQDRCHRIGQSRDVHIYRFVSEYTIESNILRKANQKRQLDNVVIQEGEFTTDYFGKF 1493 Query: 362 SGQKTVNKDDLLQMVRFGAEMVFSSKDSTIT---DEDVDRIIAKGEETKAALD 511 S + VN ++ + E + + ++ + DED DR+ A + A+D Sbjct: 1494 SVKDLVNDAEVADIPDKPLEPAYGNVENVLAQAEDED-DRVAANAAMKEVAID 1545
>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1904 Score = 125 bits (313), Expect = 1e-28 Identities = 65/113 (57%), Positives = 80/113 (70%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCR+DGST +DR ++ F + E F+FLLSTRAGGLGINL TAD VI YDSDWNP Sbjct: 1669 YCRLDGSTKLEDRRDTVHDF-QTRPEIFIFLLSTRAGGLGINLTTADTVIFYDSDWNPTI 1727 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLS 364 D QA DRAHR+GQ K+V V+R T TIEE++ +RA +K + +VIQ G S Sbjct: 1728 DSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVIQGGGAS 1780
>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1612 Score = 124 bits (312), Expect = 2e-28 Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 2/197 (1%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCR+DGST +DR ++ F + + FVFLLSTRAGGLGINL AD VI YDSDWNP Sbjct: 1364 YCRLDGSTKLEDRRDTVADFQQR-PDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTI 1422 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ--KTV 379 D QA DRAHR+GQ ++V V+R T TIEE++ +RA +K + +VI G G T Sbjct: 1423 DSQAMDRAHRLGQTRQVTVYRLITRSTIEERIRKRALQKEEVQRVVISGGAAGGVDFNTR 1482 Query: 380 NKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMD 559 N+D + + A + + + + ++ + +GE A+ K ++A K K D Sbjct: 1483 NRDSKTKDI---AMWLADDEQAELIEQKEREALERGETFGASKGGK-----KNAQKRKRD 1534 Query: 560 DTAELYDFDGDKEEDNA 610 T + +G+ D+A Sbjct: 1535 VTLDDMYHEGEGNFDDA 1551
>SWR1_SCHPO (O13682) Helicase swr1 (EC 3.6.1.-)| Length = 1288 Score = 124 bits (310), Expect = 3e-28 Identities = 76/220 (34%), Positives = 114/220 (51%), Gaps = 24/220 (10%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T + R + FN VF+LSTR+GGLGINL AD VI YDSDWNPQ Sbjct: 1034 YLRLDGATKIEQRQILTERFNNDDKIP-VFILSTRSGGLGINLTGADTVIFYDSDWNPQL 1092 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D QAQDR+HRIGQ ++V ++R +EYT+E ++ RA +K LD +VIQ G + + K Sbjct: 1093 DAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFT-TEWFRK 1151 Query: 386 DDLLQMVRFGAEMV-----FSSKDSTITDEDVDRIIAKGEETKAALDAKMKK-------- 526 D+L + E + S ST +E+ + +A E+ + A++ + Sbjct: 1152 ADVLDLFDLDDESLKKVKADSDSGSTKNEENWEVALAAAEDEEDVQAAQVARKESALEQT 1211 Query: 527 -----------FTEDAIKFKMDDTAELYDFDGDKEEDNAD 613 T+D+ D ++ D +E+ N + Sbjct: 1212 EFSETSTPQAMLTKDSTPLSSDSATPGFERDSTEEQSNTN 1251
>SWR1_ASHGO (Q759G7) Helicase SWR1 (EC 3.6.1.-)| Length = 1486 Score = 123 bits (309), Expect = 4e-28 Identities = 77/204 (37%), Positives = 115/204 (56%), Gaps = 11/204 (5%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T +DR + FN VF+LS+R+GGLGINL AD VI YDSDWNP Sbjct: 1260 YMRLDGATKIEDRQILTERFNTD-PRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAM 1318 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQG--------RL 361 D Q QDR HRIGQ ++V ++RF +E+TIE ++++A +K LD +VIQ+G RL Sbjct: 1319 DKQCQDRCHRIGQTRDVHIYRFASEHTIESNILKKANQKRQLDNIVIQKGEFTTDYFSRL 1378 Query: 362 SGQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGE---ETKAALDAKMKKFT 532 S + + D+ ++ + +T + ++R++A+ E + KAA A MK+ Sbjct: 1379 SVKDLLGSDETEEIA--DERPLLEDPATTADSKKLERLLAQAEDEDDVKAARLA-MKEVD 1435 Query: 533 EDAIKFKMDDTAELYDFDGDKEED 604 D F+ T D D +E+ Sbjct: 1436 VDDRDFRESSTCANPSPDEDVDEE 1459
>SWR1_USTMA (Q4P328) Helicase SWR1 (EC 3.6.1.-)| Length = 1830 Score = 122 bits (307), Expect = 6e-28 Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 8/180 (4%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T + R A + FN+ F+LSTR+GGLGINL AD V+ YD DWN Sbjct: 1576 YLRLDGATKVESRQALTEQFNRDARIS-AFILSTRSGGLGINLTGADTVLFYDLDWNAAI 1634 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 + Q DRAHRIGQ ++V ++RF TE+TIEE ++ +A +K LD +VIQQG + + + Sbjct: 1635 EAQCMDRAHRIGQTRDVHIYRFVTEHTIEENMLRKANQKRLLDNVVIQQGEFNTETLAKR 1694 Query: 386 DDLLQMV----RFG-AEMVFSSKDSTITDEDVDRIIAKG---EETKAALDAKMKKFTEDA 541 D M+ + G E+V + D + DV+ + E+ +AAL A+ + F +DA Sbjct: 1695 LDWTDMLDESGKIGDVEVVVA--DQGVGARDVESAFLQAEDDEDRQAALRARHEMFIDDA 1752
>YFK8_YEAST (P43610) Hypothetical ATP-dependent helicase YFR038W (EC 3.6.1.-)| Length = 853 Score = 122 bits (306), Expect = 8e-28 Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 2/133 (1%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 RIDGS + R ++ FN + +FLLSTRA GLGINL AD V+L+DSDWNPQ DL Sbjct: 648 RIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDL 707 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQK--TVNK 385 QA DR HRIGQ+ V V+R C + TIE ++ RA K L+ +VIQ G+ + K +N+ Sbjct: 708 QAMDRCHRIGQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVIQMGKFNNLKKLALNE 767 Query: 386 DDLLQMVRFGAEM 424 L+ + G + Sbjct: 768 GSFLKANKAGVNV 780
>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1708 Score = 122 bits (305), Expect = 1e-27 Identities = 73/178 (41%), Positives = 98/178 (55%), Gaps = 7/178 (3%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 YCR+DGST +DR ++ F + E FVFLLSTRAGGLGINL AD VI YDSDWNP Sbjct: 1461 YCRLDGSTKLEDRRDTVADFQQR-PEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTI 1519 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSG------ 367 D QA DRAHR+GQ ++V V+R T TIEE++ +RA +K + +VI G G Sbjct: 1520 DSQAMDRAHRLGQTRQVTVYRLITRGTIEERIRKRALQKEEVQRVVISGGAAGGVDFNTR 1579 Query: 368 -QKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTED 538 +++ KD + + + K+ D + G+ K A + K T D Sbjct: 1580 NRESRTKDIAMWLADDEQAELIEQKEKEALDR--GEVFGAGKGGKKAAQKRKKDLTLD 1635
>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)| Length = 1772 Score = 121 bits (304), Expect = 1e-27 Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 2/201 (0%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 190 I + Y R+DG+T + R + FN VF+LSTR+GGLGINL AD VI YDSD Sbjct: 1507 IHGLRYMRLDGATKIEQRQLLTERFNTDPKIP-VFILSTRSGGLGINLTGADTVIFYDSD 1565 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ 370 WNP D Q QDR HRIGQ ++V ++RF +E+TIE ++++A +K LD +VIQ G + Sbjct: 1566 WNPSMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKQILDNVVIQDGEFT-T 1624 Query: 371 KTVNKDDLLQMVRFGAEMVFSSKDST--ITDEDVDRIIAKGEETKAALDAKMKKFTEDAI 544 NK + M+ + + T ++ ++++R +A+ E+ A AK+ Sbjct: 1625 DYFNKMSVHDMLGLEPDDDAAPVADTLNLSGKNLERALAQAEDADDAAAAKVA------- 1677 Query: 545 KFKMDDTAELYDFDGDKEEDN 607 + ++ DFD ++E+N Sbjct: 1678 --TKETNLDVEDFDETQKENN 1696
>SWR1_YEAST (Q05471) Helicase SWR1 (EC 3.6.1.-) (Swi2/Snf2-related 1)| Length = 1514 Score = 120 bits (302), Expect = 2e-27 Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 8/201 (3%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T +DR + FN S VF+LS+R+GGLGINL AD VI YDSDWNP Sbjct: 1289 YMRLDGATKIEDRQILTERFNTD-SRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAM 1347 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLS------- 364 D Q QDR HRIGQ ++V ++RF +E+TIE ++++A +K LD +VIQ+G + Sbjct: 1348 DKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKL 1407 Query: 365 GQKTVNKDDLLQMVRFGAEMVFSSKDSTITD-EDVDRIIAKGEETKAALDAKMKKFTEDA 541 + + +L + G + + + D D ++R++A+ E+ D K Sbjct: 1408 SVRDLLGSELPENASGGDKPLIADADVAAKDPRQLERLLAQAEDED---DVKAANLAMRE 1464 Query: 542 IKFKMDDTAELYDFDGDKEED 604 ++ DD E + EE+ Sbjct: 1465 VEIDNDDFDESTEKKAANEEE 1485
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 120 bits (302), Expect = 2e-27 Identities = 64/111 (57%), Positives = 78/111 (70%), Gaps = 1/111 (0%) Frame = +2 Query: 26 YCRIDGSTGGDDR-DASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQ 202 YCR+DGST +DR D D +P E F+FLLSTRAGGLGINL +AD VI YDSDWNP Sbjct: 1741 YCRLDGSTKLEDRRDTVADFQTRP--EIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPT 1798 Query: 203 ADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQG 355 D QA DRAHR+GQ K+V V+R T TIEE++ +RA +K + +VI G Sbjct: 1799 IDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRAMQKEEVQRVVITGG 1849
>INO80_CANAL (Q59KI4) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1387 Score = 120 bits (301), Expect = 3e-27 Identities = 60/107 (56%), Positives = 77/107 (71%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DGST + R + A+ + E F+F+LSTRAGGLG+NL +AD VI YDSDWNP Sbjct: 1279 YIRLDGSTTIESRREMVQAW-QTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTI 1337 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVI 346 D QA DRAHRIGQ K+V+VFR T TIE+K++ERA +K + LV+ Sbjct: 1338 DSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1384
>SWR1_CRYNE (Q5K8T2) Helicase SWR1 (EC 3.6.1.-)| Length = 1246 Score = 119 bits (299), Expect = 5e-27 Identities = 57/110 (51%), Positives = 76/110 (69%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DGST +DR + FN S FVF+ S+R+GG+GINL AD V YDSDWNP Sbjct: 981 YLRLDGSTKIEDRQVLTERFNSD-SRIFVFIASSRSGGVGINLTGADTVFFYDSDWNPSM 1039 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQG 355 D Q DRAHRIGQ +EV ++RF + +T+EE ++ +A +K LD +VIQ+G Sbjct: 1040 DRQCMDRAHRIGQTREVHIYRFVSSHTVEENMLRKAEQKRLLDKMVIQEG 1089
>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)| Length = 1845 Score = 119 bits (298), Expect = 7e-27 Identities = 63/159 (39%), Positives = 93/159 (58%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T + R D FN F+LSTR+GGLGINL AD VI YD DWNP Sbjct: 1549 YLRLDGATKVEQRQILTDRFNHD-PRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAM 1607 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D Q QDR HRIGQ ++V ++R +E+TIE ++ +A +K LD +VIQ+G + N+ Sbjct: 1608 DKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGEFT-TDYFNR 1666 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKA 502 + ++ E++ S++D + +DR++ T A Sbjct: 1667 LSVRDVLGSNGEVIASNEDDVAANLAMDRVLGGPSTTGA 1705
>SWR1_CANGA (Q6FK48) Helicase SWR1 (EC 3.6.1.-)| Length = 1450 Score = 118 bits (296), Expect = 1e-26 Identities = 69/183 (37%), Positives = 107/183 (58%), Gaps = 12/183 (6%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T +DR + FN + VF+LS+R+GGLGINL AD VI YDSDWNP Sbjct: 1221 YMRLDGATKIEDRQILTERFNSD-PKITVFILSSRSGGLGINLTGADTVIFYDSDWNPAM 1279 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQG--------RL 361 D Q QDR HRIGQ ++V ++RF +E+TIE ++++A +K LD ++IQ+G +L Sbjct: 1280 DKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDDVIIQKGEFTTDYFSKL 1339 Query: 362 SGQKTVNKDDLLQMVRFGAEMVFSSKDSTITD-EDVDRIIAKGE---ETKAALDAKMKKF 529 S + D + + + + S I D + +++++A+ E + KAA A + Sbjct: 1340 SVKDLFGSDVVGDLPVIDTKPLLGSDSEAIKDPKKLEKLLAQAEDEDDVKAANSALREVN 1399 Query: 530 TED 538 +D Sbjct: 1400 VDD 1402
>SWR1_EMENI (Q5ARK3) Helicase swr1 (EC 3.6.1.-)| Length = 1656 Score = 117 bits (293), Expect = 3e-26 Identities = 70/195 (35%), Positives = 101/195 (51%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T + R D FN + F+LS+R+GGLGINL AD VI YD DWNP Sbjct: 1374 YLRLDGTTKVEQRQILTDRFNND-NRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAM 1432 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D Q QDR HRIGQ ++V ++RF +EYTIE ++ +A +K LD +VIQ+G + Sbjct: 1433 DKQCQDRCHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGEFT------- 1485 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMDDT 565 T DV +I E K A M + E+ ++ +T Sbjct: 1486 ------------------TDYFTKLDVRDMIGNDEALKDEASAAMDRVLEN----RVTNT 1523 Query: 566 AELYDFDGDKEEDNA 610 + +++ DKE+ +A Sbjct: 1524 SRVFEQAEDKEDIDA 1538
>SWR1_KLULA (Q6CJ38) Helicase SWR1 (EC 3.6.1.-)| Length = 1572 Score = 117 bits (292), Expect = 4e-26 Identities = 75/204 (36%), Positives = 116/204 (56%), Gaps = 8/204 (3%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T +DR + FN VF+LS+R+GGLGINL AD VI YDSDWNP Sbjct: 1353 YMRLDGATKIEDRQILTERFNSD-PRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAM 1411 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ--KTV 379 D Q QDR HRIGQ ++V ++RF +++TIE ++++A +K LD +VIQ G + + Sbjct: 1412 DKQCQDRCHRIGQTRDVHIYRFVSDHTIESNILKKANQKRHLDNVVIQTGDFTTDYFTKL 1471 Query: 380 NKDDLLQMVRFGAEM---VFSSKDSTITDEDVDRIIAKGEETKAALDAK--MKKFTEDAI 544 + DLL GAE + K +++++++A+ E+ A AK +++ D Sbjct: 1472 SVKDLL-----GAEAPEDIPDDKPLLQDQKNLNKLLAQAEDEDDAKAAKSALREVNVDNE 1526 Query: 545 KFKMDD-TAELYDFDGDKEEDNAD 613 F+ A+ + D + ED+ D Sbjct: 1527 DFQEGSVAAQDGNSDNENNEDSED 1550
>SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)| Length = 1695 Score = 116 bits (291), Expect = 5e-26 Identities = 65/154 (42%), Positives = 89/154 (57%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T + R D FN VF+LS+R+GGLGINL AD VI YD DWNP Sbjct: 1421 YLRLDGTTKVEQRQILTDRFNND-DRILVFILSSRSGGLGINLTGADTVIFYDLDWNPAM 1479 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D Q QDR HRIGQ ++V ++RF +E+TIE ++ +A +K LD +VIQ+G + K Sbjct: 1480 DKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILRKANQKRMLDDVVIQEGEFT-TDYFTK 1538 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKG 487 D+ M+ G E + S D + +A G Sbjct: 1539 LDVRDMI--GEEAEAQDEASAAMDRVLSSRVATG 1570
>INO80_DEBHA (Q6BGY8) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1364 Score = 116 bits (290), Expect = 6e-26 Identities = 74/188 (39%), Positives = 106/188 (56%), Gaps = 4/188 (2%) Frame = +2 Query: 26 YCRIDGSTGGDDR-DASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQ 202 Y R+DGS+ DDR D D KP E FVFLLSTRAGGLGINL AD VI YDSDWNP Sbjct: 1185 YIRLDGSSKLDDRRDLVHDWQTKP--EIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPT 1242 Query: 203 ADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVN 382 D QA DRAHR+GQ ++V V+R T TIEE++ +RA + Sbjct: 1243 IDSQAMDRAHRLGQTRQVTVYRLLTRGTIEERMRDRAKQ--------------------- 1281 Query: 383 KDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAAL---DAKMKKFTEDAIKFK 553 K+ + Q+V G + + ++S +DV ++ +++ AA D++ K+ +D+ K + Sbjct: 1282 KEQVQQVVMEGKSAIANKEESGNKKKDVAFLLLGNDDSSAAALNDDSEEKQNLQDSKKSQ 1341 Query: 554 MDDTAELY 577 + ++Y Sbjct: 1342 AKNLEDMY 1349
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 114 bits (286), Expect = 2e-25 Identities = 64/178 (35%), Positives = 93/178 (52%), Gaps = 13/178 (7%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T + R D FN F+LSTR+GGLGINL AD VI YD DWNP Sbjct: 1414 YLRLDGATKVEQRQILTDRFNND-PRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAM 1472 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLS------- 364 D Q QDR HRIGQ ++V ++R +E+TIE ++ +A +K LD +VIQ+G + Sbjct: 1473 DKQCQDRCHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEGEFTTDYFNKL 1532 Query: 365 ------GQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKM 520 +K +K + L + V D+ V R + + E+ + A++ Sbjct: 1533 SVRDVLSEKLDSKSEGLDAADAALDRVLGGPDTNNDQRRVGRALEQAEDREDVAAARV 1590
>INO80_KLULA (Q6CNY4) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1489 Score = 109 bits (273), Expect = 6e-24 Identities = 63/137 (45%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDR-DASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 190 ++ + R+DGS+ DDR D D KP + F+FLLSTRAGGLGINL AD VI YDSD Sbjct: 1358 RQYTHIRLDGSSKLDDRRDLVHDWQTKP--DIFIFLLSTRAGGLGINLTAADTVIFYDSD 1415 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ 370 WNP D QA DRAHR+GQ ++V V+R TIEE++ +RA +K +QQ + G+ Sbjct: 1416 WNPTIDSQAMDRAHRLGQTRQVTVYRLLIRGTIEERMRDRAKQKEH-----VQQVVMEGK 1470 Query: 371 KTVNKDDLLQMVRFGAE 421 NK ++++ + +E Sbjct: 1471 AKENKQKIIEVEKEHSE 1487
>INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1910 Score = 109 bits (272), Expect = 7e-24 Identities = 57/108 (52%), Positives = 72/108 (66%), Gaps = 1/108 (0%) Frame = +2 Query: 26 YCRIDGSTG-GDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQ 202 Y R+DG++ D RD D KP E F+FLLSTRAGGLGINL AD VI YD DWNP Sbjct: 1622 YLRLDGASKISDRRDMVTDWQTKP--ELFIFLLSTRAGGLGINLTAADTVIFYDHDWNPS 1679 Query: 203 ADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVI 346 D QA DRAHR+GQ K+V V+R T+ TI+E+++ A K + +V+ Sbjct: 1680 NDSQAMDRAHRLGQTKQVTVYRLITKGTIDERIVRLARNKKEVQDIVV 1727
>YFC1_SCHPO (O42861) Probable ATP-dependent helicase C25A8.01c in chromosome I| (EC 3.6.1.-) Length = 922 Score = 107 bits (267), Expect = 3e-23 Identities = 66/123 (53%), Positives = 80/123 (65%), Gaps = 1/123 (0%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 + R DGST D R ID F S VFLLST+AGG GINLA A++VILYD +NP Sbjct: 804 FLRFDGSTQVDFRQDLIDQFYADESIN-VFLLSTKAGGFGINLACANMVILYDVSFNPFD 862 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ-KTVN 382 DLQA+DRAHR+GQKKEV V++F + TIEE + A K+ALDA LSG +TV Sbjct: 863 DLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAKIALDA------TLSGNAETVE 916 Query: 383 KDD 391 +D Sbjct: 917 AED 919
>INO80_ASHGO (Q74Z27) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1414 Score = 106 bits (265), Expect = 5e-23 Identities = 55/108 (50%), Positives = 76/108 (70%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 + R+DGS+ +DR + + S+ F+FLLSTRAGGLGINL +AD VI YDSDWNP Sbjct: 1283 HIRLDGSSKLEDRRDLVHDWQTK-SDIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTI 1341 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 349 D QA DRAHR+GQ K+V V+R + TIEE++ +RA +K + +V++ Sbjct: 1342 DSQAMDRAHRLGQTKQVTVYRLLIKGTIEERMRDRAKQKEHVQQVVME 1389
>INO80_CANGA (Q6FV37) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1484 Score = 106 bits (265), Expect = 5e-23 Identities = 55/108 (50%), Positives = 74/108 (68%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 + R+DGS+ +DR + + + E F+FLLSTRAGGLGINL AD VI YDSDWNP Sbjct: 1338 HIRLDGSSKLEDRRDLVHDW-QTNPEIFIFLLSTRAGGLGINLTAADTVIFYDSDWNPTI 1396 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 349 D QA DRAHR+GQ K+V V+R TIEE++ +RA +K + +V++ Sbjct: 1397 DSQAMDRAHRLGQTKQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVME 1444
>INO80_YEAST (P53115) Putative DNA helicase INO80 (EC 3.6.1.-)| (Inositol-requiering protein 80) Length = 1489 Score = 105 bits (263), Expect = 8e-23 Identities = 55/108 (50%), Positives = 74/108 (68%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 + R+DGS+ +DR + + + E FVFLLSTRAGGLGINL AD VI YDSDWNP Sbjct: 1342 HIRLDGSSKLEDRRDLVHDW-QTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTI 1400 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 349 D QA DRAHR+GQ ++V V+R TIEE++ +RA +K + +V++ Sbjct: 1401 DSQAMDRAHRLGQTRQVTVYRLLVRGTIEERMRDRAKQKEQVQQVVME 1448
>MOT1_YEAST (P32333) TATA-binding protein-associated factor MOT1 (EC 3.6.1.-)| (TBP-associated factor MOT1) (Modifier of transcription 1) Length = 1867 Score = 104 bits (260), Expect = 2e-22 Identities = 73/207 (35%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 V Y R+DGS DR + FN+ S + LL+T+ GGLG+NL AD VI + DWNP Sbjct: 1674 VTYMRLDGSIDPRDRQKVVRKFNEDPSIDCL-LLTTKVGGLGLNLTGADTVIFVEHDWNP 1732 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTV 379 DLQA DRAHRIGQKK V V+R T+ T+EEK++ K+ + + V+ Q + SG ++ Sbjct: 1733 MNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVNQ-QNSGLASM 1791 Query: 380 NKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTED------- 538 + LL + D D + ++ E K D++ K ED Sbjct: 1792 DTHQLLDLF------------------DPDNVTSQDNEEKNNGDSQAAKGMEDIANETGL 1833 Query: 539 --AIKFKMDDTAELYDFDGDKEEDNAD 613 K + + EL+D +EE N D Sbjct: 1834 TGKAKEALGELKELWDPSQYEEEYNLD 1860
>INO80_CRYNE (Q5KHM0) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1765 Score = 104 bits (259), Expect = 2e-22 Identities = 64/159 (40%), Positives = 93/159 (58%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DGS+ +R + ++ + + FVF LSTRAGGLGINL AD VI YD DWNP + Sbjct: 1496 YLRLDGSSPIAERRDMVTSW-QTNPDIFVFCLSTRAGGLGINLTAADTVIFYDHDWNPSS 1554 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D QA DRAHR+GQ K+V V+R TIEE++++ A K + +V+ G K+V+ Sbjct: 1555 DAQAMDRAHRVGQTKQVTVYRLVARGTIEERILQMARGKKDIQDVVV------GTKSVSD 1608 Query: 386 DDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKA 502 V +E+V D DE++ +AK ++ +A Sbjct: 1609 ------VAKPSEIVSLFMD----DEELAESVAKRKQAEA 1637
>RAD54_SCHPO (P41410) DNA repair protein rhp54 (EC 3.6.1.-) (RAD54 homolog 1)| Length = 852 Score = 103 bits (256), Expect = 5e-22 Identities = 55/138 (39%), Positives = 83/138 (60%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 R+DG+ + R +D FN P + FVFLLS++AGG GINL A+ +IL+D DWNP AD Sbjct: 656 RLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQ 715 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDD 391 QA R R GQKK+ V+RF TIEEK+ +R K +L + V+ + + ++ + D+ Sbjct: 716 QALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQ-DVERHFSLDN 774 Query: 392 LLQMVRFGAEMVFSSKDS 445 L Q+ + V + ++ Sbjct: 775 LRQLFQLNDHTVCETHET 792
>RAD54_YEAST (P32863) DNA repair and recombination protein RAD54 (EC 3.6.1.-)| Length = 898 Score = 102 bits (255), Expect = 7e-22 Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 4/162 (2%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 R+DG+ + R +D FN P ++F+FLLS++AGG GINL A+ +IL D DWNP AD Sbjct: 701 RLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQ 760 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDD 391 QA R R GQKK+ ++RF + TIEEK+ +R K++L + V+ + ++ + D+ Sbjct: 761 QALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVV-DAKEDVERLFSSDN 819 Query: 392 LLQMVRFGAEMVFSSKDSTITDE----DVDRIIAKGEETKAA 505 L Q+ F ++TI + R A+G++ K A Sbjct: 820 LRQL--------FQKNENTICETHETYHCKRCNAQGKQLKRA 853
>RA54B_CHICK (Q9DG67) DNA repair and recombination protein RAD54B (EC 3.6.1.-)| (RAD54 homolog B) Length = 918 Score = 102 bits (253), Expect = 1e-21 Identities = 51/113 (45%), Positives = 68/113 (60%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG+T R +D+FN S F+FLLS++AGG+G+NL A +ILYD DWNP Sbjct: 694 YTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPAT 753 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLS 364 D+QA R R GQK V ++R T TIEEK+ +R K L V+ + S Sbjct: 754 DIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTS 806
>ERCC6_HUMAN (Q03468) DNA excision repair protein ERCC-6 (EC 3.6.1.-)| (ATP-dependent helicase ERCC6) (Cockayne syndrome protein CSB) Length = 1493 Score = 100 bits (250), Expect = 3e-21 Identities = 54/112 (48%), Positives = 72/112 (64%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 Q+ Y ++DG+T R I +N+ S FVFLL+TR GGLG+NL A+ V++YD DW Sbjct: 878 QKYTYLKMDGTTTIASRQPLITRYNEDTSI-FVFLLTTRVGGLGVNLTGANRVVIYDPDW 936 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 349 NP D QA++RA RIGQKK+V V+R T TIEEK+ R K L V++ Sbjct: 937 NPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
>MOT1_SCHPO (O43065) Probable helicase mot1 (EC 3.6.1.-) (TBP-associated factor| mot1) (Modifier of transcription 1) Length = 1953 Score = 100 bits (249), Expect = 3e-21 Identities = 56/134 (41%), Positives = 77/134 (57%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 V Y R+DGS R ++ FN S V LL+T GGLG+NL AD VI + DWNP Sbjct: 1764 VTYMRLDGSVEPTKRQEAVTKFNNDPSID-VLLLTTHVGGLGLNLTGADTVIFVEHDWNP 1822 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTV 379 DLQA DRAHRIGQKK V V+R T +EEK++ K+ + + V+ Q + +G ++ Sbjct: 1823 MRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVVNQ-QNAGLSSI 1881 Query: 380 NKDDLLQMVRFGAE 421 D +L + A+ Sbjct: 1882 GTDQILDLFNTTAD 1895
>SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) (ATP-dependent helicase 1) (hHEL1) Length = 1026 Score = 99.8 bits (247), Expect = 6e-21 Identities = 54/103 (52%), Positives = 71/103 (68%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG T +R ID FN + FVFLLST+AGGLGINL +A+VVIL+D D NP Sbjct: 897 YLRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALD 334 D QA+DR HR+GQ KEV V + ++ TIEE +++ +KL L+ Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 998
>SMRCD_MOUSE (Q04692) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A containing DEAD/H box 1 (EC 3.6.1.-) (ATP-dependent helicase SMARCAD1) (Enhancer trap locus homolog 1) (Etl-1) Length = 1021 Score = 99.8 bits (247), Expect = 6e-21 Identities = 54/103 (52%), Positives = 71/103 (68%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG T +R ID FN + FVFLLST+AGGLGINL +A+VVIL+D D NP Sbjct: 892 YLRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 950 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALD 334 D QA+DR HR+GQ KEV V + ++ TIEE +++ +KL L+ Sbjct: 951 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 993
>RA54B_MOUSE (Q6PFE3) DNA repair and recombination protein RAD54B (EC 3.6.1.-)| (RAD54 homolog B) Length = 886 Score = 99.4 bits (246), Expect = 8e-21 Identities = 50/111 (45%), Positives = 65/111 (58%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 R+DG T R +D+FN S F+FLLS++AGG+G+NL +ILYD DWNP D+ Sbjct: 667 RLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDI 726 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLS 364 QA R R GQK V ++R T TIEEK+ +R K L V+ R S Sbjct: 727 QAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSS 777
>BTAF1_HUMAN (O14981) TATA-binding protein-associated factor 172 (EC 3.6.1.-)| (ATP-dependent helicase BTAF1) (TBP-associated factor 172) (TAF-172) (TAF(II)170) (B-TFIID transcription factor-associated 170 kDa subunit) Length = 1849 Score = 99.4 bits (246), Expect = 8e-21 Identities = 56/128 (43%), Positives = 74/128 (57%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 V Y R+DGS R + + FN S V LL+T GGLG+NL AD V+ + DWNP Sbjct: 1672 VTYLRLDGSIPPGQRHSIVSRFNNDPSID-VLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1730 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTV 379 DLQA DRAHRIGQK+ V V+R T T+EEK++ K+ + VI Q S +++ Sbjct: 1731 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQEN-SSLQSM 1789 Query: 380 NKDDLLQM 403 D LL + Sbjct: 1790 GTDQLLDL 1797
>RA54B_HUMAN (Q9Y620) DNA repair and recombination protein RAD54B (EC 3.6.1.-)| (RAD54 homolog B) Length = 910 Score = 99.0 bits (245), Expect = 1e-20 Identities = 50/113 (44%), Positives = 65/113 (57%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 Y R+DG T R +D FN S F+FLLS++AGG+G+NL +ILYD DWNP Sbjct: 687 YTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPAT 746 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLS 364 D+QA R R GQK V ++R T TIEEK+ +R K L V+ + S Sbjct: 747 DIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTS 799
>RAD26_YEAST (P40352) DNA repair and recombination protein RAD26 (EC 3.6.1.-)| (ATP-dependent helicase RAD26) Length = 1085 Score = 98.6 bits (244), Expect = 1e-20 Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 1/145 (0%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 190 + + Y R+DG+T R + +D FN + VFLL+TR GGLG+NL A+ +I++D D Sbjct: 694 LSHLNYLRMDGTTNIKGRQSLVDRFNNESFD--VFLLTTRVGGLGVNLTGANRIIIFDPD 751 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQ 370 WNP D+QA++RA RIGQK+EV ++R +IEEK+ R K L ++ + Q Sbjct: 752 WNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPK---Q 808 Query: 371 KTVNK-DDLLQMVRFGAEMVFSSKD 442 K K +L + G E +S+++ Sbjct: 809 KRFFKIHELHDLFSLGGENGYSTEE 833
>YAB9_YEAST (P31380) Hypothetical 128.5 kDa ATP-dependent helicase in ATS1-TPD3| intergenic region (EC 3.6.1.-) Length = 1131 Score = 98.2 bits (243), Expect = 2e-20 Identities = 53/125 (42%), Positives = 77/125 (61%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 + R+DGST +DR ID F + + +F+LST+AGG GINL A+ VI++D +NP Sbjct: 993 FLRLDGSTQVNDRQLLIDKFYED-KDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHD 1051 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 D QA DRAHR+GQ KEV + T+ +IEEK+ + A KLALD+ + + + Sbjct: 1052 DRQAADRAHRVGQTKEVNITTLITKDSIEEKIHQLAKNKLALDSYISEDKKSQDVLESKV 1111 Query: 386 DDLLQ 400 D+L+ Sbjct: 1112 SDMLE 1116
>RAD54_CHICK (O12944) DNA repair and recombination protein RAD54-like (EC| 3.6.1.-) (RAD54 homolog) (Putative recombination factor GdRad54) (Fragment) Length = 733 Score = 97.8 bits (242), Expect = 2e-20 Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 1/149 (0%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +R Y R+DG+ R ++ FN P S +F+F+LS++AGG G+NL A+ ++++D DW Sbjct: 525 RRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW 584 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQK 373 NP D QA R R GQKK ++R + TIEEK+ +R K AL + V+ + Sbjct: 585 NPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDE------- 637 Query: 374 TVNKDDLLQMVRFG-AEMVFSSKDSTITD 457 + D+ + G + +FS ++TI+D Sbjct: 638 ---EQDVERHFSLGELKELFSLNETTISD 663
>RAD54_MOUSE (P70270) DNA repair and recombination protein RAD54-like (EC| 3.6.1.-) (RAD54 homolog) (mRAD54) (mHR54) Length = 747 Score = 97.4 bits (241), Expect = 3e-20 Identities = 47/114 (41%), Positives = 70/114 (61%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 190 ++R Y R+DG+ R ++ FN P S FVF+LS++AGG G+NL A+ ++++D D Sbjct: 535 VRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPD 594 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQ 352 WNP D QA R R GQKK ++R + TIEEK+ +R K AL + V+ + Sbjct: 595 WNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648
>RAD54_HUMAN (Q92698) DNA repair and recombination protein RAD54-like (EC| 3.6.1.-) (RAD54 homolog) (hRAD54) (hHR54) Length = 747 Score = 97.1 bits (240), Expect = 4e-20 Identities = 47/113 (41%), Positives = 69/113 (61%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +R Y R+DG+ R ++ FN P S FVF+LS++AGG G+NL A+ ++++D DW Sbjct: 536 RRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDW 595 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQ 352 NP D QA R R GQKK ++R + TIEEK+ +R K AL + V+ + Sbjct: 596 NPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648
>RDH54_YEAST (P38086) DNA repair and recombination protein RDH54 (RAD homolog 54)| (Recombination factor TID1) (Two-hybrid interaction with DMC1 protein 1) [Includes: DNA topoisomerase (EC 5.99.1.-); Putative helicase (EC 3.6.1.-)] Length = 924 Score = 96.7 bits (239), Expect = 5e-20 Identities = 47/123 (38%), Positives = 73/123 (59%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 + +CR+DGS RD+ + +FN+ F FLLS ++GG+G+NL +IL+D+DWNP Sbjct: 672 MSHCRLDGSIPAKQRDSIVTSFNR-NPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNP 730 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTV 379 DLQA R HR GQKK ++R T I+EK+++R K +L + + +++ Sbjct: 731 SVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESS 790 Query: 380 NKD 388 N D Sbjct: 791 NDD 793
>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked nuclear protein) (Heterochromatin protein 2) (HP1 alpha-interacting protein) (HP1-BP38 protein) Length = 2476 Score = 95.5 bits (236), Expect = 1e-19 Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 1/140 (0%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDS 187 I+ + Y R+DGST R + FN + + +F++ST+AG LGINL A+ VI++D+ Sbjct: 2061 IRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDA 2120 Query: 188 DWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSG 367 WNP D+Q+ R +R GQ K V V+RF + T+E+K+ +R K +L V+ Q ++ Sbjct: 2121 SWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVER 2180 Query: 368 QKTVNKDDLLQMVRFGAEMV 427 T+N +L ++ F +++ Sbjct: 2181 HFTMN--ELTELYTFEPDLL 2198
>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 94.0 bits (232), Expect = 3e-19 Identities = 49/140 (35%), Positives = 84/140 (60%), Gaps = 1/140 (0%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDS 187 ++ + Y R+DGST R + FN + + +F++ST+AG LGINL A+ VI++D+ Sbjct: 2078 LRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDA 2137 Query: 188 DWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSG 367 WNP D+Q+ R +R GQ K V V+RF + T+E+K+ +R K +L V+ Q ++ Sbjct: 2138 SWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVER 2197 Query: 368 QKTVNKDDLLQMVRFGAEMV 427 T+N +L ++ F +++ Sbjct: 2198 HFTMN--ELTELYTFEPDLL 2215
>ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) Length = 2492 Score = 94.0 bits (232), Expect = 3e-19 Identities = 49/140 (35%), Positives = 84/140 (60%), Gaps = 1/140 (0%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDS 187 ++ + Y R+DGST R + FN + + +F++ST+AG LGINL A+ VI++D+ Sbjct: 2078 LRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDA 2137 Query: 188 DWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSG 367 WNP D+Q+ R +R GQ K V V+RF + T+E+K+ +R K +L V+ Q ++ Sbjct: 2138 SWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVER 2197 Query: 368 QKTVNKDDLLQMVRFGAEMV 427 T+N +L ++ F +++ Sbjct: 2198 HFTMN--ELTELYTFEPDLL 2215
>ATRX_HUMAN (P46100) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent| helicase ATRX) (X-linked helicase II) (X-linked nuclear protein) (XNP) (Znf-HX) Length = 2492 Score = 94.0 bits (232), Expect = 3e-19 Identities = 49/140 (35%), Positives = 84/140 (60%), Gaps = 1/140 (0%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDS 187 ++ + Y R+DGST R + FN + + +F++ST+AG LGINL A+ VI++D+ Sbjct: 2078 LRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDA 2137 Query: 188 DWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSG 367 WNP D+Q+ R +R GQ K V V+RF + T+E+K+ +R K +L V+ Q ++ Sbjct: 2138 SWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVER 2197 Query: 368 QKTVNKDDLLQMVRFGAEMV 427 T+N +L ++ F +++ Sbjct: 2198 HFTMN--ELTELYTFEPDLL 2215
>ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase XNP) (X-linked nuclear protein) (dXNP) (d-xnp) Length = 1311 Score = 88.6 bits (218), Expect = 1e-17 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 1/130 (0%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDSDWNPQ 202 Y R+DGS + R+A FN + + +FL+STRAGGLGINL A+ V+++D WNP Sbjct: 963 YFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSWNPS 1022 Query: 203 ADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVN 382 D Q+ R +R GQ K ++R T+E+KV ER K A VI + ++S + N Sbjct: 1023 HDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVIDEQQIS--RHYN 1080 Query: 383 KDDLLQMVRF 412 + DL+++ + Sbjct: 1081 QTDLMELYSY 1090
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase xnp-1) (X-linked nuclear protein 1) Length = 1359 Score = 85.9 bits (211), Expect = 9e-17 Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 1/137 (0%) Frame = +2 Query: 5 SCIQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILY 181 S ++ Y IDGS RDA +FN P + + + L+STRAG LG N+ A+ VI++ Sbjct: 1009 SWLEGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRVIIF 1068 Query: 182 DSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRL 361 D+ WNP D Q+ R +R GQ K V ++RF + T+EE++ +R K + V+ + ++ Sbjct: 1069 DACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVDEAQI 1128 Query: 362 SGQKTVNKDDLLQMVRF 412 Q+ +DL ++ +F Sbjct: 1129 --QRHYLGNDLTELYQF 1143
>TTF2_DROME (P34739) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) (Protein lodestar) Length = 1061 Score = 84.7 bits (208), Expect = 2e-16 Identities = 46/120 (38%), Positives = 74/120 (61%) Frame = +2 Query: 35 IDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQ 214 ++G+ +R ++ FN ++K V LLS AGG+G+NL A+ ++L D WNPQ + Q Sbjct: 938 LNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLTAGGVGLNLIGANHLLLLDLHWNPQLEAQ 997 Query: 215 AQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDDL 394 AQDR +R+GQKK V +++F T+E+++ KKL L V+ ++S + T+ DDL Sbjct: 998 AQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLADGVLTGAKVSSKLTI--DDL 1055
>Y020_MYCPN (P75093) Hypothetical ATP-dependent helicase MPN020 (EC 3.6.1.-)| (D12_orf1030) Length = 1030 Score = 84.0 bits (206), Expect = 3e-16 Identities = 48/106 (45%), Positives = 61/106 (57%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 Q + Y DG R + I+ FN V L S +AGG+GINL A+VVI +D W Sbjct: 901 QGIEYFIFDGRKSPKSRHSIIEKFNN-AKNPCVLLASLKAGGVGINLTAAEVVIHFDVWW 959 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 331 N + QA DRAHRIGQKK VQV+R + TIEE+V + +K L Sbjct: 960 NTAVENQATDRAHRIGQKKTVQVYRIIAKNTIEERVCQVQAEKQEL 1005
>Y018_MYCGE (P47264) Hypothetical ATP-dependent helicase MG018 (EC 3.6.1.-)| Length = 1031 Score = 83.2 bits (204), Expect = 6e-16 Identities = 50/130 (38%), Positives = 76/130 (58%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 Q++ + DG +R+ I FN E V L S +AGG+GINL A+VVI +D W Sbjct: 902 QKIDHLVFDGRKTVKNRNTIIQKFNS-AKEPCVMLASLKAGGVGINLTAAEVVIHFDVWW 960 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQK 373 N + QA DRAHRIGQ K VQV+R + TIEE+V + +K L + + ++ K Sbjct: 961 NSAVENQATDRAHRIGQSKTVQVYRIIAKNTIEERVCQVQNQKQELVKKTLVED-VNFFK 1019 Query: 374 TVNKDDLLQM 403 +++ ++LL++ Sbjct: 1020 SLSHEELLKL 1029
>RDH54_SCHPO (Q09772) Meiotic recombination protein rdh54 (EC 3.6.1.-)| (ATP-dependent helicase rdh54) (RAD54 protein homolog 2) Length = 811 Score = 83.2 bits (204), Expect = 6e-16 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 1/159 (0%) Frame = +2 Query: 11 IQRVXYCRIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDS 187 I V +C++ GST +RD + FN ++F V LLS++AGG G+NL + +I+Y+ Sbjct: 570 ILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSSKAGGCGLNLTGSTRLIIYEP 629 Query: 188 DWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSG 367 WNP DLQA R +R GQK+ V ++ F + ++E++ R K L + I Sbjct: 630 SWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQNTKQGLSSSFIDSDASQK 689 Query: 368 QKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAK 484 + +D+ + + + + +++D + K Sbjct: 690 KNFFTGEDIKTLFSYSKTETCLTYELAFDSDEIDSLTKK 728
>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) Length = 1184 Score = 82.8 bits (203), Expect = 7e-16 Identities = 45/110 (40%), Positives = 64/110 (58%) Frame = +2 Query: 17 RVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWN 196 R+ Y IDGS R ++AFN + V L+S AGG+G+NL + + L D WN Sbjct: 1055 RLTYATIDGSVNPKQRMDLVEAFNHSQGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWN 1113 Query: 197 PQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVI 346 P + QA DR +R+GQKK+V + RF E T+EEK+++ KK L V+ Sbjct: 1114 PSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1163
>SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 1 (EC 3.6.1.-) (SMARCA3-like protein 1) Length = 881 Score = 81.6 bits (200), Expect = 2e-15 Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 1/126 (0%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPG-SEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQAD 208 R+DG+ R I F P + V L S +A G GINL A V L+D WNP + Sbjct: 754 RLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLFDPWWNPAVE 813 Query: 209 LQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKD 388 QA DR HRIGQK+EV++ R +IEE+V+E KK L ++ + ++ VN + Sbjct: 814 EQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKKNLANEAFKRRQKKDEREVNVE 873 Query: 389 DLLQMV 406 D++ ++ Sbjct: 874 DVVALM 879
>SMRA3_HUMAN (Q14527) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (DNA binding protein/plasminogen activator inhibitor 1 regulator) (Helicase-like tran Length = 1009 Score = 80.9 bits (198), Expect = 3e-15 Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAF-NKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQ 202 + R+DGS R SI F N + LLS +AGG+G+NL+ A V L D WNP Sbjct: 878 FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPA 937 Query: 203 ADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVN 382 A+ Q DR HR+GQK+EV + +F + ++EE +++ KK L A G K N Sbjct: 938 AEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAF------GTKKPN 991 Query: 383 KDDLLQ 400 D++ Q Sbjct: 992 ADEMKQ 997
>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1198 Score = 80.9 bits (198), Expect = 3e-15 Identities = 41/122 (33%), Positives = 69/122 (56%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 Q + + R DG+ R +I+ F + +E + L+S +AGG+G+NL A+ V L D+ W Sbjct: 1058 QGIRWLRFDGTMSQAQRANTIEEFGRKTNEPLILLISLKAGGVGLNLTMANYVFLMDTWW 1117 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQK 373 N + QA DR HR+GQ K V V R+ + T+E+++++ K AL + G + + Sbjct: 1118 NEAIEQQAIDRVHRLGQNKPVYVTRYIIKGTVEKRIMKIQRSKTALVNASLSNGAKTKET 1177 Query: 374 TV 379 T+ Sbjct: 1178 TL 1179
>YBMA_SCHPO (Q10332) Probable ATP-dependent helicase C582.10c in chromosome II| (EC 3.6.1.-) Length = 830 Score = 79.3 bits (194), Expect = 8e-15 Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 2/128 (1%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 + + R DG R+ S+D + V L S + G LG+NL A VIL D WNP Sbjct: 695 IGFVRYDGRMNNRAREKSLDLLRSDSGTQ-VLLCSLKCGALGLNLTCASRVILCDVWWNP 753 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLS--GQK 373 + QA DR HRIGQ+++V V++ E TIEEK++E K L + G+ S K Sbjct: 754 AIEEQAIDRVHRIGQRRDVLVYKLVVENTIEEKIVELQNLKRDLAKQALGDGKKSVFTSK 813 Query: 374 TVNKDDLL 397 + +DLL Sbjct: 814 KLTLNDLL 821
>TTF2_HUMAN (Q9UNY4) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) (Factor 2) (F2) (HuF2) (Lodestar homolog) Length = 1162 Score = 79.3 bits (194), Expect = 8e-15 Identities = 43/109 (39%), Positives = 63/109 (57%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 + Y IDGS R ++AFN + V L+S AGG+G+NL + + L D WNP Sbjct: 1034 LTYATIDGSVNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNP 1092 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVI 346 + QA DR +R+GQ+K+V + RF E T+EEK+++ KK L V+ Sbjct: 1093 SLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
>RAD16_YEAST (P31244) DNA repair protein RAD16 (EC 3.6.1.-) (ATP-dependent| helicase RAD16) Length = 790 Score = 76.6 bits (187), Expect = 5e-14 Identities = 42/107 (39%), Positives = 60/107 (56%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 ++ GS RD +I F + VFL+S +AGG+ +NL A V + D WNP + Sbjct: 666 KLQGSMSPTQRDETIKYFMN-NIQCEVFLVSLKAGGVALNLCEASQVFILDPWWNPSVEW 724 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQ 352 Q+ DR HRIGQ + V++ RFC E +IE ++IE KK + I Q Sbjct: 725 QSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATINQ 771
>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (TNF-response element-binding protein) (P113) Length = 1003 Score = 76.3 bits (186), Expect = 7e-14 Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 3/128 (2%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAF-NKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQ 202 + R+DGS R SI F N + LLS +AGG+G+NL A V L D WNP Sbjct: 872 FTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPA 931 Query: 203 ADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKV--IERAYKKLALDALVIQQGRLSGQKT 376 A+ Q DR HR+GQK+EV + +F + ++EE + I+ + LA A G K Sbjct: 932 AEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAF--------GTKK 983 Query: 377 VNKDDLLQ 400 + +D+ Q Sbjct: 984 TDANDMKQ 991
>SMRA3_RABIT (Q95216) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A member 3 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 3) (RUSH-1) Length = 1005 Score = 76.3 bits (186), Expect = 7e-14 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAF-NKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQ 202 + R+DGS R SI F N + LLS +AGG+G+NL A V L D WNP Sbjct: 875 FTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLMDPAWNPA 934 Query: 203 ADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDA 337 A+ Q DR HR+GQK+EV + +F + ++EE +++ K L A Sbjct: 935 AEDQRFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELAA 979
>RHP16_SCHPO (P79051) DNA repair protein rhp16 (RAD16 homolog)| Length = 861 Score = 76.3 bits (186), Expect = 7e-14 Identities = 42/107 (39%), Positives = 60/107 (56%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 ++DG R A+I+AF+ + +FL+S +AGG+ +NL A V + D WN Sbjct: 737 KLDGGMTPKARAATIEAFSNDINIT-IFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQW 795 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQ 352 QA DR HRIGQK+ ++V C E +IE K+IE KK + I Q Sbjct: 796 QAMDRIHRIGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATIDQ 842
>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (mDomino) Length = 3072 Score = 75.1 bits (183), Expect = 2e-13 Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 22/221 (9%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 + Y RID + + R + +FN+ F LLST + GINL AD V+ YD+D NP Sbjct: 1855 LTYVRIDENANSEQRQELMRSFNRD-RRIFCALLSTHSRATGINLVEADTVVFYDNDLNP 1913 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR-----LS 364 D +AQ+ RIG+ K++ ++R + +IEEK+++ K L + V QG Sbjct: 1914 VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLKNGTKDLIRE--VAAQGNDYSMAFL 1971 Query: 365 GQKTVNK--------DDLLQMVRFGAEMVFSSKDSTITD---EDVDRIIAKGEETKAALD 511 Q+T+ + DD V+ E V S++ ++++ + R + ++ L+ Sbjct: 1972 TQRTIQELFEVYSPMDDTGFPVK-AEEFVVLSQEPSVSETIAPKIARPFIEALKSIECLE 2030 Query: 512 AKMKKFTEDA------IKFKMDDTAELYDFDGDKEEDNADF 616 ++ TE+A + D YD + + E+ ADF Sbjct: 2031 EDAQRSTEEAVPGSSSVAVSSDSDGSRYDEEPSQLEELADF 2071
>RAD5_CANAL (Q5ACX1) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1084 Score = 75.1 bits (183), Expect = 2e-13 Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKP--GSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 + DG +DR +++FN+P + + LLS +AGG+G+NL TA + D W+P Sbjct: 958 KFDGRLNMNDRTKLLESFNQPLEDGKVAILLLSLKAGGVGLNLTTASRAYMMDPWWSPSI 1017 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNK 385 + QA DR HRIGQ + V+V RF E +IE K+++ +K + V + ++ + + Sbjct: 1018 EDQAIDRIHRIGQNETVKVVRFIMENSIETKMLKIQERKKQIGEAVAAEEEERRKRRIEE 1077 Query: 386 DDLL 397 +L Sbjct: 1078 IQIL 1081
>SM3L2_ARATH (Q9FNI6) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 2 (EC 3.6.1.-) (SMARCA3-like protein 2) Length = 1029 Score = 75.1 bits (183), Expect = 2e-13 Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 2/113 (1%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 + R+DG+ R+ + F++ GS V L+S +AGG+GINL A + D WNP Sbjct: 906 FVRLDGTLSQQQREKVLKEFSEDGSI-LVLLMSLKAGGVGINLTAASNAFVMDPWWNPAV 964 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKV--IERAYKKLALDALVIQQGR 358 + QA R HRIGQ KEV++ RF + T+EE++ ++ +++ AL Q+ R Sbjct: 965 EEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVR 1017
>GTA_NPVOP (O10302) Probable global transactivator (EC 3.6.1.-) (ATP-dependent| helicase GTA) Length = 498 Score = 74.7 bits (182), Expect = 2e-13 Identities = 41/113 (36%), Positives = 64/113 (56%) Frame = +2 Query: 56 DDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHR 235 ++R A + FN S V L+S + GG+G+NL + +I+ + WNPQ +LQAQDR HR Sbjct: 384 EERTAVENQFNAADSPYRVLLMSIKCGGVGLNLTGGNHIIMLEPHWNPQIELQAQDRIHR 443 Query: 236 IGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDDL 394 +GQKK V++ + EE IER Y K D + ++ + +N +D+ Sbjct: 444 MGQKKRTYVYKMIVD---EENSIER-YMKARQDKKLTFVNKVFDRTALNYEDI 492
>RAD5_USTMA (Q4PGG5) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1387 Score = 73.6 bits (179), Expect = 4e-13 Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 2/98 (2%) Frame = +2 Query: 17 RVXYCRIDGSTGGDDRDASIDAFNKPGSEKFV--FLLSTRAGGLGINLATADVVILYDSD 190 R + R+DGST RD + F P V FL+S +AGG+G+NL A+ + L D Sbjct: 1251 RFHFLRLDGSTPQKVRDKLVLEFQSPSPTNHVVLFLISLKAGGVGLNLTAANKIWLLDFW 1310 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVI 304 WN + QA DR HR GQ V VFR+ + +IE++++ Sbjct: 1311 WNSSIENQAIDRIHRFGQTSPVSVFRYIIKDSIEDRIL 1348
>SM3L3_ARATH (Q9FIY7) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A member 3-like 3 (EC 3.6.1.-) (SMARCA3-like protein 3) Length = 1277 Score = 72.8 bits (177), Expect = 8e-13 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 2/113 (1%) Frame = +2 Query: 26 YCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 + R DG R+ + FN+ +K + L+S +AGG+G+NL A V L D WNP Sbjct: 1154 FLRFDGKLAQKGREKVLKEFNET-KQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAV 1212 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKV--IERAYKKLALDALVIQQGR 358 + QA R HRIGQK+ V V RF + T+EE++ ++ +++ AL ++ R Sbjct: 1213 EEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVR 1265
>RAD5_ASHGO (Q753V5) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1085 Score = 71.2 bits (173), Expect = 2e-12 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 1/105 (0%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDSDWNPQAD 208 + DG +R + F + K V LLS +AGG+G+NL A + D W+P + Sbjct: 961 KFDGRLDLKERSNVLAKFTEKSLVKMKVLLLSLKAGGVGLNLTCASHAFIMDPWWSPGME 1020 Query: 209 LQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALV 343 QA DR HRIGQ V+++RF E +IEEK++ KK +L V Sbjct: 1021 DQAMDRIHRIGQSNTVKIYRFIVENSIEEKMLRIQEKKRSLGEFV 1065
>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein) Length = 3160 Score = 71.2 bits (173), Expect = 2e-12 Identities = 37/102 (36%), Positives = 59/102 (57%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 + Y RID + + R + +FN+ F +LST + GINL AD V+ YD+D NP Sbjct: 1939 LTYVRIDENASSEQRQELMRSFNRD-RRIFCAILSTHSRTTGINLVEADTVVFYDNDLNP 1997 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 325 D +AQ+ RIG+ K++ ++R + +IEEK+++ K L Sbjct: 1998 VMDAKAQEWCDRIGRCKDIHIYRLVSGNSIEEKLLKNGTKDL 2039
>RAD5_GIBZE (Q4IJ84) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1154 Score = 70.9 bits (172), Expect = 3e-12 Identities = 38/101 (37%), Positives = 61/101 (60%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 + + R+DGS R A ++ F + + LLS RAGG+G+NL +A V + D W+ Sbjct: 1027 IKFLRLDGSMAQKARAAVLNEFTEKKGFT-ILLLSLRAGGVGLNLTSAGRVFMMDPWWSF 1085 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 322 + QA DR HR+GQ+ EVQV RF + ++EE++++ +K Sbjct: 1086 AVEAQAIDRVHRMGQEAEVQVKRFVVKESVEERMLKVQERK 1126
>RAD5_YARLI (Q6C2R8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1025 Score = 70.5 bits (171), Expect = 4e-12 Identities = 38/106 (35%), Positives = 60/106 (56%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +++ R DG+ R + AF S+ V L+S + GG+G+NL TA+ + D W Sbjct: 897 EKIQAFRFDGTLSRQQRTDVLKAFGL--SKGSVLLISLKTGGVGLNLVTANHAFIMDPWW 954 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 331 + QA DR HR+GQ K+V V RF E ++EEK+++ +K+ L Sbjct: 955 TFAQEAQAIDRIHRMGQTKDVHVTRFIVENSVEEKMLKIQQQKMVL 1000
>RAD5_NEUCR (Q7S1P9) DNA repair protein rad-5 (EC 3.6.1.-)| Length = 1222 Score = 70.1 bits (170), Expect = 5e-12 Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Frame = +2 Query: 17 RVXYCRIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDSDW 193 ++ + R+DGS R A + F + KF V LLS +AGG+G+NL +A V + D W Sbjct: 1092 KISFLRLDGSMSQKARAAVLTEFQS--TNKFCVLLLSLKAGGVGLNLTSAKRVYMMDPWW 1149 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 322 + + QA DR HR+GQ+ EV+V+RF + ++E +++ +K Sbjct: 1150 SFAVEAQAIDRVHRMGQEDEVRVYRFIVKQSVEMRMLRVQERK 1192
>RAD5_SCHPO (P36607) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1133 Score = 68.6 bits (166), Expect = 1e-11 Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAF-NKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 190 +++ Y R DG+ R +++ F N P V ++S +AGG+G+NL A+ V + D Sbjct: 1004 EKMGYARFDGTMSQQMRSTALETFRNDPDVN--VLIISLKAGGVGLNLTCANHVFIMDPW 1061 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 322 W+ + QA DR HR+GQ+K V V R+ T+EE++++ +K Sbjct: 1062 WSWSVEAQAIDRIHRLGQEKPVFVTRYIVRDTVEERMLKIQERK 1105
>RAD5_CANGA (Q6FY76) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1151 Score = 68.6 bits (166), Expect = 1e-11 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFN-KPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQAD 208 + DG +R A ++ F K + + V LLS +AGG+G+NL A + D W+P + Sbjct: 1026 KFDGRLSLKERTAVLEDFKVKDYAVQKVLLLSLKAGGVGLNLTCASYAFMMDPWWSPSME 1085 Query: 209 LQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 331 QA DR HRIGQ V+V RF + +IEEK++ +K L Sbjct: 1086 DQAIDRIHRIGQTNSVKVIRFVIDGSIEEKMLRIQDRKRTL 1126
>SMAL1_BOVIN (Q9TTA5) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (DNA-dependent ATPase A) (HepA-related protein) Length = 941 Score = 67.0 bits (162), Expect = 4e-11 Identities = 35/94 (37%), Positives = 54/94 (57%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +RV + RIDGST DR+ S +F+ P + + V LS A +G+ ++AD+V+ + W Sbjct: 745 KRVQHIRIDGSTSSADRETSASSFSCPRALRGV--LSITAANMGLTFSSADLVVFGELFW 802 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 295 NP +QA+DR HRIGQ V + T ++ Sbjct: 803 NPGVLMQAEDRVHRIGQLSSVSIHYLVARGTADD 836
>YQHH_BACSU (P54509) Hypothetical ATP-dependent helicase yqhH (EC 3.6.1.-)| Length = 557 Score = 66.6 bits (161), Expect = 5e-11 Identities = 31/81 (38%), Positives = 50/81 (61%) Frame = +2 Query: 104 KFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEY 283 K L++T AGG GINL + +I YD WNP Q R HR+GQ+++V ++ T++ Sbjct: 421 KIQVLIATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKH 480 Query: 284 TIEEKVIERAYKKLALDALVI 346 T+EE +++ Y+K+ L V+ Sbjct: 481 TVEEHILKLLYEKIHLFEKVV 501
>RAD5_YEAST (P32849) DNA repair protein RAD5 (EC 3.6.1.-) (Radiation sensitivity| protein 5) (Revertibility protein 2) Length = 1169 Score = 66.2 bits (160), Expect = 7e-11 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFN-KPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQAD 208 + DG +R + + F K S + + LLS +AGG+G+NL A + D W+P + Sbjct: 1045 KFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSME 1104 Query: 209 LQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 322 QA DR HRIGQ V+V RF + +IEEK++ KK Sbjct: 1105 DQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKK 1142
>SMAL1_MOUSE (Q8BJL0) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (HepA-related protein) (mharp) Length = 910 Score = 65.1 bits (157), Expect = 2e-10 Identities = 35/94 (37%), Positives = 50/94 (53%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 + V + RIDGST DR+A F V LLS A +G+ +TAD+V+ + W Sbjct: 706 KNVQHIRIDGSTPSADREAQCQRFQLSKGHT-VALLSITAANMGLTFSTADLVVFAELFW 764 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 295 NP +QA+DR HRIGQ V + + T ++ Sbjct: 765 NPGVLIQAEDRVHRIGQTNSVSIHYLVAKGTADD 798
>GTA_NPVAC (P41447) Probable global transactivator (EC 3.6.1.-) (ATP-dependent| helicase GTA) Length = 506 Score = 64.7 bits (156), Expect = 2e-10 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 3/106 (2%) Frame = +2 Query: 56 DDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAH 232 +DR + FN + + + LLS + GG+G+NL + +++ + WNPQ +LQAQDR Sbjct: 391 EDRILAETTFNDAANTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQDRIS 450 Query: 233 RIGQKKEVQVFRFCT--EYTIEEKVIERAYKKLALDALVIQQGRLS 364 R+GQ K V++ + +IE+ + +R KK+A V ++ L+ Sbjct: 451 RMGQTKNTYVYKMLNVEDNSIEKYIKQRQDKKIAFVNTVFEETLLN 496
>RAD5_KLULA (Q6CJM4) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1114 Score = 64.3 bits (155), Expect = 3e-10 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 1/128 (0%) Frame = +2 Query: 17 RVXYCRIDGSTGGDDRDASIDAFN-KPGSEKFVFLLSTRAGGLGINLATADVVILYDSDW 193 +V + DG +R ++ F+ K S + LLS + GG+G+NL A + D W Sbjct: 985 QVIIYKFDGRLDMKERTRILEQFHDKDLSCIKLLLLSLKTGGVGLNLTCASRAFMMDPWW 1044 Query: 194 NPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQK 373 +P + QA DR HRIGQ++ V+V RF + ++EEK++ +K L +V QK Sbjct: 1045 SPGMEDQAIDRIHRIGQQQTVKVVRFIIDNSVEEKMLRIQERKRMLGDIVEGDEAERRQK 1104 Query: 374 TVNKDDLL 397 + + +L Sbjct: 1105 RIEEIQML 1112
>RAD5_ASPFU (Q4WVM1) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1245 Score = 62.8 bits (151), Expect = 8e-10 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Frame = +2 Query: 35 IDGSTGGDDRDASIDAFNKPGSEKF--VFLLSTRAGGLGINLATADVVILYDSDWNPQAD 208 ID G D I + N S K V L+S RAGG+G+NL A V + D W+ + Sbjct: 1115 IDEDEGPDTPRVRISSKNSRSSPKSPAVLLISLRAGGVGLNLTAASNVFMMDPWWSFAIE 1174 Query: 209 LQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 325 QA DR HR+GQ ++V V RF + +IE +++ +K+ Sbjct: 1175 AQAIDRVHRMGQLRDVSVTRFIVKDSIEGRMLRVQERKM 1213
>RAD5_EMENI (Q5BHD6) DNA repair protein rad5 (EC 3.6.1.-)| Length = 1202 Score = 62.0 bits (149), Expect = 1e-09 Identities = 30/78 (38%), Positives = 48/78 (61%) Frame = +2 Query: 98 SEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCT 277 S V L+S +AGG+G+NL A V + D W+ + QA DR HR+GQ ++V V RF Sbjct: 1097 SSPTVLLISLKAGGVGLNLTAASNVFMMDPWWSFAIEAQAIDRVHRMGQLRDVNVVRFIV 1156 Query: 278 EYTIEEKVIERAYKKLAL 331 + +IEE+++ +K+ + Sbjct: 1157 KDSIEERMLRVQERKMGI 1174
>SMAL1_CAEEL (Q8MNV7) Putative SMARCAL1-like protein (EC 3.6.1.-)| Length = 690 Score = 60.1 bits (144), Expect = 5e-09 Identities = 37/98 (37%), Positives = 53/98 (54%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 RIDG T R A D+F + + V +LS A G+GI L A VV+ + +NP + Sbjct: 522 RIDGKTPSHRRTALCDSFQTDDNIR-VAVLSITAAGVGITLTAASVVVFAEIHFNPGYLV 580 Query: 212 QAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 325 QA+DRAHR+GQK V V + T ++ + +KL Sbjct: 581 QAEDRAHRVGQKDSVFVQYLIAKKTADDVMWNMVQQKL 618
>RAD5_DEBHA (Q6BIP2) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1153 Score = 59.3 bits (142), Expect = 9e-09 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEK--FVFLLSTRAGGLGINLATADVVILYDSDWNPQA 205 + DG ++R ++ F+ E + LLS +AGG+G+NL TA + D W+P Sbjct: 1063 KFDGRLNMNERQKILENFSSQKHENKVMILLLSLKAGGVGLNLTTASRAFMMDKWWSPSV 1122 Query: 206 DLQAQDRAHRIGQKKEVQVFRFCTEYTIEEK 298 + Q DR +RIG+ V+V RF + +IE++ Sbjct: 1123 EDQEIDRLNRIGKNMNVKVKRFIMDDSIEKR 1153
>SMAL1_HUMAN (Q9NZC9) SWI/SNF-related matrix-associated actin-dependent regulator| of chromatin subfamily A-like protein 1 (EC 3.6.1.-) (Sucrose nonfermenting protein 2-like 1) (HepA-related protein) (hHARP) Length = 954 Score = 58.5 bits (140), Expect = 1e-08 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%) Frame = +2 Query: 14 QRVXYCRIDGSTGGDDRDASIDAFNKPGSEKF-VFLLSTRAGGLGINLATADVVILYDSD 190 + V + RIDGST +R+ F SE+ V +LS A +G+ ++AD+V+ + Sbjct: 748 KHVQHIRIDGSTSSAEREDLCQQFQL--SERHAVAVLSITAANMGLTFSSADLVVFAELF 805 Query: 191 WNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEE---KVIERAYKKLA 328 WNP +QA+DR HRIGQ V + + T ++ +I+ K LA Sbjct: 806 WNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLA 854
>RAPA_HAEIN (P44781) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 923 Score = 38.9 bits (89), Expect = 0.012 Identities = 27/74 (36%), Positives = 39/74 (52%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A + G++ LLS+ G G N A ++L+D NP Q R RI Sbjct: 497 DRAAAYFADLENGAQ---VLLSSSIGSEGRNFQFAANLVLFDLPTNPDLLEQCIGRLDRI 553 Query: 239 GQKKEVQVFRFCTE 280 GQK++VQV+ C + Sbjct: 554 GQKRDVQVYVPCAK 567
>DBP7_ASPFU (Q4WV71) ATP-dependent RNA helicase dbp7 (EC 3.6.1.-)| Length = 758 Score = 38.1 bits (87), Expect = 0.021 Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 2/143 (1%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 V R+ GS + R +++ AF K +++ L+ T G++L D+V+ YD ++ Sbjct: 492 VTLFRLHGSLPQNVRTSTLGAFAK--NKEASVLICTDVASRGLDLPNVDLVVEYDPAFSA 549 Query: 200 QADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTV 379 + L R R+G+ +F + EE +E V+++G G K + Sbjct: 550 EDHLHRIGRTARVGRDGRALIF---LQPGCEENYVE-----------VLKRGYRDGGKAL 595 Query: 380 NKDDLLQMVR--FGAEMVFSSKD 442 + D ++++ FG + +KD Sbjct: 596 TRADANEILKRGFGGNVESGNKD 618
>RAPA_VIBVU (Q8DCG1) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 969 Score = 37.7 bits (86), Expect = 0.027 Identities = 36/156 (23%), Positives = 70/156 (44%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 D+ A+ A + G++ L+ + G G N A+ ++++D +NP Q R RI Sbjct: 546 DKAAAYFAQEEGGAQ---VLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRI 602 Query: 239 GQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDDLLQMVRFGA 418 GQK+++ + + T +E + + L A GR + D L++M+ G Sbjct: 603 GQKRDIDIHVPYLQGTAQEVLARWFNEGLNAFAETCPTGRTVYDQV--SDQLIEMLASG- 659 Query: 419 EMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKK 526 ++E +D +IA+ + AL A +++ Sbjct: 660 -----------SNEALDDVIAESAKLNQALKADLEQ 684
>DRS1_CANGA (Q6FW42) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 725 Score = 37.4 bits (85), Expect = 0.035 Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 3/190 (1%) Frame = +2 Query: 50 GGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRA 229 G ++ +D+ NK S + L+ T G+++ +VVI YD + + L R Sbjct: 486 GSLTQEQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRT 545 Query: 230 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDDLLQMVR 409 R G +E + F E + E +++ A + + + G K V ++ V Sbjct: 546 ARAG--REGRSITFVGEASAERSIVKDAIRG-------VNDSEIPGSKAVGRNVDWNQVE 596 Query: 410 FGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMK-KFTEDAIKFK--MDDTAELYD 580 + + D T+ D I+ + +E K L A+M+ K E+ +K K + + Sbjct: 597 -ETNKIVENMDQTVQD-----ILVEEKEEKEILRAEMELKKGENLLKHKDEIQSRPKRTW 650 Query: 581 FDGDKEEDNA 610 F +KE+ N+ Sbjct: 651 FQSEKEKKNS 660
>RAPA_ERWCT (Q6D0E6) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 36.6 bits (83), Expect = 0.061 Identities = 23/68 (33%), Positives = 35/68 (51%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A + G++ L+ + G G N A ++++D +NP Q R RI Sbjct: 543 DRAAAYFASEEEGAQ---VLICSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRI 599 Query: 239 GQKKEVQV 262 GQ KE+QV Sbjct: 600 GQAKEIQV 607
>DBP5_USTMA (Q4P7Z8) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)| Length = 456 Score = 36.2 bits (82), Expect = 0.079 Identities = 23/62 (37%), Positives = 32/62 (51%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DRD +IDAF + G K L+ST GI++ +VI YD + A+ HRI Sbjct: 340 DRDRTIDAF-RDGKSKV--LISTNVIARGIDIQQVTLVINYDMPLTQTGEADAETYLHRI 396 Query: 239 GQ 244 G+ Sbjct: 397 GR 398
>RAPA_VIBVY (Q7MHE6) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 969 Score = 35.8 bits (81), Expect = 0.10 Identities = 35/156 (22%), Positives = 70/156 (44%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 D+ A+ A + G++ L+ + G G N A+ ++++D +NP Q R RI Sbjct: 546 DKAAAYFAQEEGGAQ---VLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRI 602 Query: 239 GQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDDLLQMVRFGA 418 GQK+++ + + T +E + + L A GR + D L++M+ G Sbjct: 603 GQKRDIDIHVPYLQGTAQEVLARWFNEGLNAFAETCPTGRTVYDQV--SDQLIEMLASG- 659 Query: 419 EMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKK 526 ++E ++ +IA+ + AL A +++ Sbjct: 660 -----------SNEALNDVIAESAKLNQALKADLEQ 684
>RAPA_SHEON (Q8EJ93) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 968 Score = 35.8 bits (81), Expect = 0.10 Identities = 22/82 (26%), Positives = 39/82 (47%) Frame = +2 Query: 116 LLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 295 L+ + G G N A ++L+D NP Q R RIGQK ++Q+ + T +E Sbjct: 561 LICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDRIGQKNDIQIHLPYLQDTAQE 620 Query: 296 KVIERAYKKLALDALVIQQGRL 361 ++++ ++ L L G + Sbjct: 621 RLLQWYHQGLNAFELTCPGGHI 642
>RAPA_SHIFL (Q7UDT5) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 35.8 bits (81), Expect = 0.10 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 19/204 (9%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A G++ LL + G G N A ++++D +NP Q R RI Sbjct: 543 DRAAAWFAEEDTGAQ---VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI 599 Query: 239 GQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR--------------LSGQKT 376 GQ ++Q+ E T + ++ ++ L GR S +T Sbjct: 600 GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT 659 Query: 377 VNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRII---AKGEETKAALDAKMKKFTEDA-- 541 DDL++ R E + + ++ DR++ + G E AL +++ +D Sbjct: 660 EGFDDLIKSCREQHEALKAQ-----LEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNL 714 Query: 542 IKFKMDDTAELYDFDGDKEEDNAD 613 I F M+ L+D G ++D D Sbjct: 715 IAFAMN----LFDIIGINQDDRGD 734
>CENPH_HUMAN (Q9H3R5) Centromere protein H (Kinetochore protein CENP-H)| Length = 247 Score = 35.8 bits (81), Expect = 0.10 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 6/130 (4%) Frame = +2 Query: 188 DWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALD------ALVIQ 349 ++ D + +I Q+K+++ E IEE + KKLALD AL Sbjct: 56 EYKSMVDASEEKTPEQIMQEKQIEAKIEDLENEIEEVKVAFEIKKLALDRMRLSTALKKN 115 Query: 350 QGRLSGQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKF 529 ++S Q +V D++ ++ ++ S ++S +E + I K + K A ++K+ + Sbjct: 116 LEKISRQSSVLMDNMKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASESKLLEI 175 Query: 530 TEDAIKFKMD 559 + K K+D Sbjct: 176 QTEKNKQKID 185
>RAPA_PHOLL (Q7N8V1) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 970 Score = 35.8 bits (81), Expect = 0.10 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A + G++ LL + G G N A+ ++++D +NP Q R RI Sbjct: 544 DRAAAYFASEEEGAQ---VLLCSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRI 600 Query: 239 GQKKEVQV 262 GQ +++Q+ Sbjct: 601 GQSRDIQI 608
>RAPA_YERPS (Q66EN4) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 968 Score = 35.4 bits (80), Expect = 0.13 Identities = 22/68 (32%), Positives = 35/68 (51%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A + G++ LL + G G N A ++++D +NP Q R RI Sbjct: 544 DRAAAYFASEEDGAQ---VLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI 600 Query: 239 GQKKEVQV 262 GQ +E+Q+ Sbjct: 601 GQNREIQI 608
>RAPA_YERPE (Q8ZII0) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 968 Score = 35.4 bits (80), Expect = 0.13 Identities = 22/68 (32%), Positives = 35/68 (51%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A + G++ LL + G G N A ++++D +NP Q R RI Sbjct: 544 DRAAAYFASEEDGAQ---VLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI 600 Query: 239 GQKKEVQV 262 GQ +E+Q+ Sbjct: 601 GQNREIQI 608
>RAPA_ECOLI (P60240) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 35.4 bits (80), Expect = 0.13 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 19/204 (9%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A G++ LL + G G N A ++++D +NP Q R RI Sbjct: 543 DRAAAWFAEEDTGAQ---VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI 599 Query: 239 GQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR--------------LSGQKT 376 GQ ++Q+ E T + ++ ++ L GR S +T Sbjct: 600 GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT 659 Query: 377 VNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRII---AKGEETKAALDAKMKKFTEDA-- 541 DDL++ R E + + ++ DR++ + G E AL +++ +D Sbjct: 660 EGFDDLIKNCREQHEALKAQ-----LEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNL 714 Query: 542 IKFKMDDTAELYDFDGDKEEDNAD 613 I F M+ L+D G ++D D Sbjct: 715 IAFAMN----LFDIIGINQDDRGD 734
>RAPA_ECOL6 (Q8FL92) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 35.4 bits (80), Expect = 0.13 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 19/204 (9%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A G++ LL + G G N A ++++D +NP Q R RI Sbjct: 543 DRAAAWFAEEDTGAQ---VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI 599 Query: 239 GQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR--------------LSGQKT 376 GQ ++Q+ E T + ++ ++ L GR S +T Sbjct: 600 GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDET 659 Query: 377 VNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRII---AKGEETKAALDAKMKKFTEDA-- 541 DDL++ R E + + ++ DR++ + G E AL +++ +D Sbjct: 660 EGFDDLIKNCREQHEALKAQ-----LEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNL 714 Query: 542 IKFKMDDTAELYDFDGDKEEDNAD 613 I F M+ L+D G ++D D Sbjct: 715 IAFAMN----LFDIIGINQDDRGD 734
>RAPA_ECO57 (P60241) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 35.4 bits (80), Expect = 0.13 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 19/204 (9%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A G++ LL + G G N A ++++D +NP Q R RI Sbjct: 543 DRAAAWFAEEDTGAQ---VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI 599 Query: 239 GQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR--------------LSGQKT 376 GQ ++Q+ E T + ++ ++ L GR S +T Sbjct: 600 GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT 659 Query: 377 VNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRII---AKGEETKAALDAKMKKFTEDA-- 541 DDL++ R E + + ++ DR++ + G E AL +++ +D Sbjct: 660 EGFDDLIKNCREQHEALKAQ-----LEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNL 714 Query: 542 IKFKMDDTAELYDFDGDKEEDNAD 613 I F M+ L+D G ++D D Sbjct: 715 IAFAMN----LFDIIGINQDDRGD 734
>RAPA_HAEDU (Q7VKV0) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 973 Score = 35.0 bits (79), Expect = 0.18 Identities = 25/89 (28%), Positives = 47/89 (52%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A + G++ L+S+ G G N A ++L++ NP Q+ R RI Sbjct: 550 DRAAAYFAQIEEGAQ---VLISSSIGSEGRNFQFARNLVLFNLPDNPDLLEQSIGRLDRI 606 Query: 239 GQKKEVQVFRFCTEYTIEEKVIERAYKKL 325 GQK ++Q++ C + +++ + E ++ L Sbjct: 607 GQKNDIQIYVPCFKNSMQIVLAEWYHRGL 635
>RAPA_VIBCH (Q9KP70) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 969 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/69 (28%), Positives = 37/69 (53%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 D+ A+ A + G++ L+ + G G N A+ ++++D +NP Q R RI Sbjct: 546 DKAAAYFAQEEGGAQ---VLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRI 602 Query: 239 GQKKEVQVF 265 GQK+++ V+ Sbjct: 603 GQKRDIDVY 611
>RAPA_SALTY (Q8ZRV8) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 33.1 bits (74), Expect = 0.67 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 19/204 (9%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A G++ LL + G G N A ++++D +NP Q R RI Sbjct: 543 DRAAAWFAEEDTGAQ---VLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI 599 Query: 239 GQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR--------------LSGQKT 376 GQ ++Q+ E T + ++ ++ L GR + ++T Sbjct: 600 GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSAYASLINYLAAPEET 659 Query: 377 VNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRII---AKGEETKAALDAKMKKFTEDA-- 541 DDL++ R E + + ++ DR++ + G E L +++ +D Sbjct: 660 DGFDDLIKSCREQHEALKAQ-----LEQGRDRLLEIHSNGGEKAQQLAQSIEEQDDDTNL 714 Query: 542 IKFKMDDTAELYDFDGDKEEDNAD 613 I F M+ L+D G ++D D Sbjct: 715 IAFAMN----LFDIVGINQDDRGD 734
>RAPA_SALTI (Q8Z9J4) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 33.1 bits (74), Expect = 0.67 Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 19/204 (9%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A G++ LL + G G N A ++++D +NP Q R RI Sbjct: 543 DRAAAWFAEEDTGAQ---VLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI 599 Query: 239 GQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR--------------LSGQKT 376 GQ ++Q+ E T + ++ ++ L GR + ++T Sbjct: 600 GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSAYASLINYLAAPEET 659 Query: 377 VNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRII---AKGEETKAALDAKMKKFTEDA-- 541 DDL++ R E + + ++ DR++ + G E L +++ +D Sbjct: 660 DGFDDLIKSCREQHEALKAQ-----LEQGRDRLLEINSNGGEKAQQLAQSIEEQDDDTNL 714 Query: 542 IKFKMDDTAELYDFDGDKEEDNAD 613 I F M+ L+D G ++D D Sbjct: 715 IAFAMN----LFDIVGINQDDRGD 734
>RAPA_PASMU (Q9CK01) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 33.1 bits (74), Expect = 0.67 Identities = 22/72 (30%), Positives = 37/72 (51%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DR A+ A + G++ LLS+ G G N A ++L++ +P Q R RI Sbjct: 543 DRAAAYFAQQEDGAQ---LLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGRLDRI 599 Query: 239 GQKKEVQVFRFC 274 GQ++++Q+ C Sbjct: 600 GQRRDIQIHVPC 611
>DBP7_EMENI (Q5BGX6) ATP-dependent RNA helicase dbp7 (EC 3.6.1.-)| Length = 778 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%) Frame = +2 Query: 20 VXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNP 199 V ++ GS R +++ +F K L+ T G++L D+V+ YD ++ Sbjct: 514 VTMYKLHGSLPQHVRTSTLSSFAKNRDPSV--LICTDVASRGLDLPNVDLVVEYDPAFSA 571 Query: 200 QADLQAQDRAHRIGQKKEVQVFRF--CTEYTIEEKVIERAYK 319 L R R+G+ VF C E +E +++R Y+ Sbjct: 572 DEHLHRIGRTARLGRDGRALVFLLPGCEENYVE--ILKRGYR 611
>DBP5_SCHPO (Q09747) ATP-dependent RNA helicase dbp5 (EC 3.6.1.-)| Length = 503 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/70 (30%), Positives = 37/70 (52%) Frame = +2 Query: 35 IDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQ 214 + G+ G RDA +D+F + G+ K L++T GI+++ ++V+ YD + Sbjct: 382 LTGNLEGAQRDAIMDSF-RVGTSKV--LVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPD 438 Query: 215 AQDRAHRIGQ 244 Q HRIG+ Sbjct: 439 PQTYLHRIGR 448
>TOM1_YEAST (Q03280) E3 ubiquitin protein ligase TOM1 (EC 6.3.2.-)| (Temperature-dependent organization in mitotic nucleus protein 1) (Suppressor of snRNA protein 2) Length = 3268 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%) Frame = +2 Query: 377 VNKDDLLQMVRF--GAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDA--I 544 + DD + V G E+VFS +D + +ED D + EE + L ++M+ T D + Sbjct: 1923 IGDDDAMAFVDSDNGFEVVFSDEDDDMGEEDADDARSDSEENE--LSSEMQSSTADGTDV 1980 Query: 545 KFKMDDTAEL---YDFDGDKEEDNADF 616 +++DD L D +E+ AD+ Sbjct: 1981 DYEVDDADGLIINIDQPSGDDEEMADY 2007
>DBP5_CANAL (Q5AJD0) ATP-dependent RNA helicase DBP5 (EC 3.6.1.-)| Length = 540 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/70 (28%), Positives = 32/70 (45%) Frame = +2 Query: 35 IDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQ 214 + G DRD ID F + S+ L++T GI++A+ +V+ YD + Sbjct: 418 LHGGLDNTDRDRLIDDFREGRSK---VLITTNVLARGIDIASVSMVVNYDMPTDKYGKPD 474 Query: 215 AQDRAHRIGQ 244 HRIG+ Sbjct: 475 PSTYLHRIGR 484
>DRS1_YEAST (P32892) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-) (Deficiency| of ribosomal subunits protein 1) Length = 752 Score = 31.6 bits (70), Expect = 1.9 Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 1/171 (0%) Frame = +2 Query: 50 GGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRA 229 G ++ +D+ NK + + L+ T G+++ +VVI YD + + L R Sbjct: 511 GSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRT 570 Query: 230 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDDLLQMVR 409 R G +E + F E + + ++ A K + + + QG+ G+ D +Q+ Sbjct: 571 ARAG--REGRSVTFVGESSQDRSIVRAAIKSVE-ENKSLTQGKALGRNV----DWVQIEE 623 Query: 410 FGAEMVFSSKDSTITDEDVDRIIAKGEETKAALDAKMK-KFTEDAIKFKMD 559 + S + TI D I+ + +E K L A+M+ + E+ +K K + Sbjct: 624 --TNKLVESMNDTIED-----ILVEEKEEKEILRAEMQLRKGENMLKHKKE 667
>RAPA_VIBPA (Q87LD0) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 969 Score = 31.2 bits (69), Expect = 2.5 Identities = 18/68 (26%), Positives = 35/68 (51%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 D+ A+ A + G++ L+ + G G N A+ ++++D +NP Q R RI Sbjct: 546 DKAAAYFAQEEGGAQ---VLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLDRI 602 Query: 239 GQKKEVQV 262 GQ +++ + Sbjct: 603 GQNRDIDI 610
>G6PD_BORBU (O51581) Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) (G6PD)| Length = 478 Score = 31.2 bits (69), Expect = 2.5 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 24/140 (17%) Frame = +2 Query: 230 HRIGQKKEVQVFRFCTEYTIEEKVIERAY---------KKLALDALVIQQGRLSGQKTVN 382 H +G++ +F F +I E + Y ++L LD V + K + Sbjct: 172 HYLGKETVQNIFTFRFGNSIFENIWNNRYVDFVQITVAEELGLDGRVEYYDSVGALKDMV 231 Query: 383 KDDLLQM---------VRFGAEMVFSSKDST------ITDEDVDRIIAKGEETKAALDAK 517 ++ +LQ+ ++F +E + K I+ ED+ I KG+ + + Sbjct: 232 QNHILQLLSLVAMESPIKFDSEFIHDEKVKVLKSLRKISKEDIKNYIVKGQYIGSQVQGV 291 Query: 518 MKKFTEDAIKFKMDDTAELY 577 KK +D +F + E Y Sbjct: 292 FKKGYKDETEFLGNSNTETY 311
>RS3_HELPY (P56010) 30S ribosomal protein S3| Length = 234 Score = 31.2 bits (69), Expect = 2.5 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 9/96 (9%) Frame = +2 Query: 287 IEEKVIERAYKKLALDALVIQQGRLSGQKTVN----KDDLLQMVRFGA-----EMVFSSK 439 + E VIERA KKL + + + G + G+K V+ KD L +++ E+ Sbjct: 52 VSEIVIERAAKKLRVTVVAARPGLIIGKKGVDIEKVKDGLKTLIKKEVSINIKEVKHPQA 111 Query: 440 DSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIK 547 D+ + E+V A E + A MKK + A+K Sbjct: 112 DAQLAAENV----ATQLEKRVAFRRAMKKVMQAALK 143
>DBP7_ASPOR (Q2UE66) ATP-dependent RNA helicase dbp7 (EC 3.6.1.-)| Length = 760 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/71 (29%), Positives = 35/71 (49%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADL 211 ++ GS R A+++AF++ L+ T G++L D+VI YD ++ Sbjct: 501 KLHGSLPQHVRTATLNAFSREREPSV--LVCTDVASRGLDLPNVDLVIEYDPAFS----- 553 Query: 212 QAQDRAHRIGQ 244 A D HRIG+ Sbjct: 554 -ADDHTHRIGR 563
>UBP10_YEAST (P53874) Ubiquitin carboxyl-terminal hydrolase 10 (EC 3.1.2.15)| (Ubiquitin thioesterase 10) (Ubiquitin-specific-processing protease 10) (Deubiquitinating enzyme 10) (Disrupter of telomere silencing protein 4) Length = 792 Score = 31.2 bits (69), Expect = 2.5 Identities = 16/84 (19%), Positives = 38/84 (45%) Frame = -2 Query: 343 NQSIQCKLLVRSLNHFFLNGILGAKSENLDFFLLTYPMCTVLSLKISLWIPVTIIKNHNI 164 N ++Q L + S+ H+ + ++G + ++Y T+ +W+PV+ N+ Sbjct: 374 NAAVQAMLHIPSIQHYLFDILMGKYDSTISKNSVSY---TLAETSKKMWLPVSKNPRKNV 430 Query: 163 SSGKVDTKSTSPG*KQENKLLTSW 92 S+ ++ K N +++ W Sbjct: 431 SASYINPKHLISRLDDINCMMSEW 454
>V021_FOWPV (Q9J5I0) G-protein coupled receptor homolog FPV021| Length = 320 Score = 28.5 bits (62), Expect(2) = 2.8 Identities = 20/63 (31%), Positives = 27/63 (42%) Frame = -2 Query: 556 HFKLNGILCEFFHFCIQRCFCLFSFSYNSVNILICYCAILRTEHHFRTKSNHLQ*VILID 377 H N L FCI + + SV +L CYC +L F +K VI+I Sbjct: 172 HSDNNTYLLRRVVFCIS---LVMRYLVPSVVMLFCYCLLLFKHSLFLSKGQTYTIVIMIT 228 Query: 376 SFL 368 SF+ Sbjct: 229 SFM 231 Score = 21.2 bits (43), Expect(2) = 2.8 Identities = 7/14 (50%), Positives = 9/14 (64%) Frame = -1 Query: 614 NQHCLPPYHHQNHT 573 N+ CL YH N+T Sbjct: 164 NRDCLEDYHSDNNT 177
>RS3_HELPJ (Q9ZJR9) 30S ribosomal protein S3| Length = 234 Score = 30.8 bits (68), Expect = 3.3 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 10/97 (10%) Frame = +2 Query: 287 IEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDV 466 + E VIERA KKL + + + G + G+K V+ ++ V+ G + + K+ +I ++V Sbjct: 52 VSEIVIERAAKKLRVTVVAARPGLIIGKKGVD----IEKVKEGLKTLI-KKEVSINIKEV 106 Query: 467 DRIIAKGE----------ETKAALDAKMKKFTEDAIK 547 R A + E + A MKK + A+K Sbjct: 107 KRPQADAQLAAENVATQLEKRVAFRRAMKKVMQAALK 143
>DNAK_METTH (O27351) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 596 Score = 30.0 bits (66), Expect = 5.7 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Frame = +2 Query: 341 VIQQGRLSGQKTVNKDDLLQMV-----RFGAEMVFSSKDSTITDEDVDRIIAKGEETKAA 505 V Q G KT+ + L ++V + M + +D+ +T EDVD+II G T+ Sbjct: 267 VAQDGPKHLIKTITRAKLEELVDPIVQKCAGPMEQALRDAGMTREDVDKIILVGGPTRMP 326 Query: 506 LDAKMKKFTEDAI 544 + ++KF ED I Sbjct: 327 I---VQKFVEDFI 336
>DBP7_DEBHA (Q6BKH3) ATP-dependent RNA helicase DBP7 (EC 3.6.1.-)| Length = 798 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Frame = +2 Query: 32 RIDGSTGGDDRDASIDAFNKPGSE-----KFVFLLSTRAGGLGINLATADVVILYDSDWN 196 ++ GS R ++ AF K +E K L T G++L VI YD ++ Sbjct: 539 KLHGSLSQQQRATTLQAFIKEKNEGKNSAKHSILFCTDVASRGLDLPNISSVIEYDPPFS 598 Query: 197 PQADLQAQDRAHRIGQKKEVQVF 265 + L R+ R+G + +F Sbjct: 599 VEDHLHRIGRSARVGNEGSAVLF 621
>RAPA_PHOPR (Q6LV34) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 972 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = +2 Query: 59 DRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRI 238 DRD + F + V LL + G G N ++ ++++D NP Q R RI Sbjct: 545 DRDKAAAYFAQEDDGAQV-LLCSEIGSEGRNFQFSNQLVMFDLPNNPDLLEQRIGRLDRI 603 Query: 239 GQKKEVQV 262 GQ++++++ Sbjct: 604 GQQRDIEI 611
>PF2R_RAT (P43118) Prostaglandin F2-alpha receptor (Prostanoid FP receptor)| (PGF receptor) (PGF2 alpha receptor) Length = 366 Score = 29.6 bits (65), Expect = 7.4 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 21/152 (13%) Frame = -2 Query: 487 SFSYNSVNILICYCAILRTEHHFRTKSNHLQ*VILI-----------DSFLP*QSSLL-- 347 SFS N+V + R++ H + +S+HL+ VI + FL +++ Sbjct: 216 SFSCNAVTGVTLLRVKFRSQQHRQGRSHHLEMVIQLLAIMCVSCVCWSPFLVTMANIAIN 275 Query: 346 -NNQSIQCKLLVRSLNHFFLNGILG-------AKSENLDFFLLTYPMCTVLSLKISLWIP 191 NN + C+ + +L N IL K+ + + L C V + + +W Sbjct: 276 GNNSPVTCETTLFALRMATWNQILDPWVYILLRKAVLRNLYKLASRCCGVNIISLHIW-E 334 Query: 190 VTIIKNHNISSGKVDTKSTSPG*KQENKLLTS 95 ++ IKN S KV S SP ++EN+ +S Sbjct: 335 LSSIKN----SLKVAAISESPAAEKENQQASS 362
>CRYD_ARATH (Q84KJ5) Cryptochrome DASH, chloroplast/mitochondrial precursor| Length = 569 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Frame = +2 Query: 410 FGAEMVFSSKDSTITDEDVDRIIAK-----GEETKAALDAKMKKFTEDAIKFKMDDTAEL 574 FGA VF+ K++ + DV+R++ + G TK L + +D + F + D ++ Sbjct: 178 FGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDV 237 Query: 575 Y 577 Y Sbjct: 238 Y 238
>DDX28_MOUSE (Q9CWT6) Probable ATP-dependent RNA helicase DDX28 (EC 3.6.1.-)| (Mitochondrial DEAD box protein 28) Length = 540 Score = 29.6 bits (65), Expect = 7.4 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 3/122 (2%) Frame = +2 Query: 17 RVXYCRIDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWN 196 ++ + R+ G R +F K GS+ L+ T G++ +VVI YD Sbjct: 421 KIQHLRLQGQMPASMRAGIFQSFQK-GSQNI--LVCTDIASRGLDSVHVEVVINYDFPPT 477 Query: 197 PQADLQAQDRAHRIGQKKEVQVFRFCT---EYTIEEKVIERAYKKLALDALVIQQGRLSG 367 Q + R R+G + V F T + ++ +K+ A ++ +L L G Sbjct: 478 LQDYIHRAGRVGRVGSEVPGSVISFVTHPWDVSLVQKIELAARRRRSLPGLASSVGDPLP 537 Query: 368 QK 373 QK Sbjct: 538 QK 539
>RECG_STAES (Q8CSV3) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 682 Score = 29.6 bits (65), Expect = 7.4 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = +2 Query: 35 IDGSTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSD 190 + G +D+D + F+K + L+ST +G+N+ A +++YD+D Sbjct: 510 LHGKMSAEDKDQVMQKFSK---HEIDILVSTTVVEVGVNVPNATFMMIYDAD 558
>RGS10_CAEEL (O45523) Regulator of G-protein signaling rgs-10| Length = 270 Score = 29.3 bits (64), Expect = 9.7 Identities = 31/102 (30%), Positives = 48/102 (47%) Frame = +2 Query: 266 RFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDDLLQMVRFGAEMVFSSKDS 445 R TE+ + K KK AL L R S Q V++ ++ ++R ++FSS + Sbjct: 66 RLATEWNPKNKKDAPPKKKNALVILERVASR-SNQNAVSR--VINILRSKVHLMFSSSNE 122 Query: 446 TITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMDDTAE 571 + EDV+R K ET AA + F I+F + T+E Sbjct: 123 LPSSEDVER-WKKSPETLAASEYGCNLF----IQFLKEQTSE 159
>TKT2_YEAST (P33315) Transketolase 2 (EC 2.2.1.1) (TK 2)| Length = 681 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Frame = +2 Query: 344 IQQGRLSGQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRI-IAKGEETKAALDAKM 520 I+ GR +++ +L Q+ E E+ D I ++ G E ++DA Sbjct: 515 IKSGRTPSVVALSRQNLPQLEHSSFEKALKGGYVIHDVENPDIILVSTGSEVSISIDAAK 574 Query: 521 KKFTEDAIKFKMDDTAELYDFDGDKEE 601 K + IK ++ + Y FD EE Sbjct: 575 KLYDTKKIKARVVSLPDFYTFDRQSEE 601
>SPE2A_STRPU (P04110) SPEC 2A protein| Length = 150 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +2 Query: 443 STITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMDDTAELYDFDGDKEEDNADF 616 S+ ED D G+ T L A K D + K+D+ + D DG K+ D ++F Sbjct: 17 SSFKSEDTD---GDGKITSEELRAAFKSIEIDLTQEKIDEMMGMVDKDGSKDMDFSEF 71
>ANC5_HUMAN (Q9UJX4) Anaphase-promoting complex subunit 5 (APC5) (Cyclosome| subunit 5) Length = 755 Score = 29.3 bits (64), Expect = 9.7 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 3/104 (2%) Frame = +2 Query: 257 QVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLSGQKTVNKDDLLQMVRFGAEMVFSS 436 QVF+ YT ++ + KK DA + R G++ + K++L VR E+ S Sbjct: 150 QVFKL---YTALQQYFQNGEKKTVEDADMELTSRDEGERKMEKEELDVSVR-EEEVSCSG 205 Query: 437 KDSTITDE---DVDRIIAKGEETKAALDAKMKKFTEDAIKFKMD 559 S E + K +ETKA A ++K + +KF D Sbjct: 206 PLSQKQAEFFLSQQASLLKNDETKALTPASLQKELNNLLKFNPD 249
>TIG_ENTFA (Q837W3) Trigger factor (TF)| Length = 427 Score = 29.3 bits (64), Expect = 9.7 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = +2 Query: 422 MVFSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMDDTAELYD--FDGDK 595 + S +D +TDEDV+ + + +E++A L K E+ +D L D F+G K Sbjct: 124 LTVSKQDREVTDEDVEARLKREQESQAELVIKEDAAAENGDTVVIDFEGFLGDEAFEGGK 183 Query: 596 EED 604 E+ Sbjct: 184 GEN 186
>TIG_BACHD (Q9K8F3) Trigger factor (TF)| Length = 431 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/54 (38%), Positives = 32/54 (59%) Frame = +2 Query: 428 FSSKDSTITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMDDTAELYDFDG 589 F KD+T++DEDV++ + +E +A L E+AI + DTA L DF+G Sbjct: 126 FEEKDTTVSDEDVEQELKSLQERQAELVV----VEEEAI--QEGDTAVL-DFEG 172
>IWS1_YARLI (Q6CGB2) Transcription factor IWS1| Length = 414 Score = 29.3 bits (64), Expect = 9.7 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Frame = +2 Query: 314 YKKLALDALVIQQGRLSGQKTVNKDDLLQMVRFGAEMVFSSKDSTITDEDVDRI------ 475 Y KL+ +Q SG+KT+ K ++KDS D+D D I Sbjct: 90 YNKLSAHRRKVQS---SGKKTLKKR--------------ATKDSRAADDDEDEIDHSHID 132 Query: 476 ----IAKGEETKAALDAKMKKFTEDAIKFKMDDTAELYD 580 +A+ E +A +DA MK ++ K DD + D Sbjct: 133 LDPSMARRREIEARIDAAMKPASQRRKKLGEDDIEMMQD 171
>TLE1_MOUSE (Q62440) Transducin-like enhancer protein 1 (Groucho-related| protein 1) (Grg-1) Length = 770 Score = 29.3 bits (64), Expect = 9.7 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +2 Query: 524 KFTEDAIKFKMDDTAELYDFDGDKEEDN 607 +F+ D K K+DD + YD DGDK +DN Sbjct: 219 EFSSDIKKRKVDDK-DNYDSDGDKSDDN 245
>NAC_HALSA (Q9HS36) Nascent polypeptide-associated complex protein| Length = 130 Score = 29.3 bits (64), Expect = 9.7 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Frame = +2 Query: 419 EMVFSSKDST---ITDEDVDRIIAKGEETKAALDAKMKKFTEDAIKFKMDDTAELYDFDG 589 E+V S D T +D DV ++ A+G+ET L +++ DAI+ D ++ D D Sbjct: 30 EVVISLDDGTEVVFSDPDVTKMDARGQETYQVLGDPVERDAADAIEAAPADDSDDTDDDD 89 Query: 590 DKEEDNAD 613 + + D Sbjct: 90 AIPQGDVD 97
>NUSG_STRCO (P36266) Transcription antitermination protein nusG| Length = 300 Score = 29.3 bits (64), Expect = 9.7 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +2 Query: 419 EMVFSSKDSTITDEDVDRIIAKGE-ETKAALDAKMKKFTEDAIKFKMDDTAELYDFDGDK 595 E V S +D T E D + E +AA D + + EDA + D+TAE D + + Sbjct: 11 EPVESVEDELGTVEGADNEDTEASAEAEAADDTVVAETDEDATDAEADETAEATDAEATE 70 Query: 596 EEDNAD 613 E +AD Sbjct: 71 AEADAD 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,835,091 Number of Sequences: 219361 Number of extensions: 1667904 Number of successful extensions: 5875 Number of sequences better than 10.0: 173 Number of HSP's better than 10.0 without gapping: 5585 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5814 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
