| Clone Name | bags25n24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197706.1| Oryza sativa (japonica cultivar-group) putative transcription regulatory protein (OSJNBa0010C11.3), mRNA Length = 7478 Score = 220 bits (111), Expect = 4e-54 Identities = 305/369 (82%), Gaps = 3/369 (0%) Strand = Plus / Plus Query: 1 gcatgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttc 60 ||||||||| ||||| || || || || || ||||||||||| ||||| || || || | Sbjct: 6231 gcatgacttccctgagttcctttgcgattaccacttcagtttctgtgatgtcattccccc 6290 Query: 61 cagttgcattcaaatgcgcaatgtcattcttagtgcttttccgcgcaacatgagacttcc 120 ||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct: 6291 cagctgcattcaaatgcgcaatgttattcttagtgcttttccacgcaatatgagacttcc 6350 Query: 121 agacccatctactcctaacttgaagattgatctgctagctgaaatttcagtacctccacg 180 ||| || |||||||| || || ||||||||||| || ||||| |||||| | |||||| | Sbjct: 6351 agatccctctactccaaatttaaagattgatcttcttgctgagatttcaattcctccaag 6410 Query: 181 aatcatgtcagatgtcgatggtgccctcaagtcaaagcatatgaagactgatgtcgatga 240 ||||||||| ||||| ||||||||| | ||||||||||| |||||||| | || ||||| Sbjct: 6411 aatcatgtctgatgttgatggtgccttaaagtcaaagcaaatgaagacacaggttgatga 6470 Query: 241 gtatcttaagagaccagaaggctcatcctttttgagtgatctgaagcaaaagttgctgct 300 ||| || ||||| ||||| || ||||||||| | |||| | ||||| ||||| || || Sbjct: 6471 gtacctcaagaggccagatgg---atcctttttaactgatttaaagcagaagttacttct 6527 Query: 301 gccccagaatgaagctaatgttgctgggacacgctacaatgtgcctttgatgaattcact 360 ||| || || ||||| ||| |||||||||| || |||||||| ||| | | |||||||| Sbjct: 6528 gccgcaaaacgaagcaaatattgctgggactcgttacaatgtacctcttgttaattcact 6587 Query: 361 tgttctcta 369 ||| ||||| Sbjct: 6588 tgtgctcta 6596 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 542 aatgcgatcgctaaccaactgcgctacccgaatagccacacacactacttctccttcat 600 |||||||| || ||||| |||||||| || || | |||||||||||| || |||||||| Sbjct: 6763 aatgcgattgccaaccagctgcgctatccaaacaaccacacacactatttttccttcat 6821
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 1 gcatgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttc 60 |||||||||||||||||||||||| | || ||||||||||| |||||| |||| ||||| Sbjct: 146501 gcatgactttcctgaatttctgtgcaattaccacttcagtttctgtgacatgattccttc 146560 Query: 61 cagttgcattcaaatgcgcaatgtcattctt 91 ||||||||||||||||||||||||||||||| Sbjct: 146561 cagttgcattcaaatgcgcaatgtcattctt 146591 Score = 93.7 bits (47), Expect = 7e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 275 agtgatctgaagcaaaagttgctgctgccccagaatgaagctaatgttgctgggacacgc 334 |||||||||||||||||||| ||||||| || |||||| ||| |||||| ||||||||| Sbjct: 147572 agtgatctgaagcaaaagttattgctgccacaaaatgaaactagtgttgccgggacacgc 147631 Query: 335 tacaatgtgcctttgatgaattcacttgttctcta 369 |||||||| ||| | || ||||| ||||||||||| Sbjct: 147632 tacaatgttcctctcattaattcgcttgttctcta 147666 Score = 63.9 bits (32), Expect = 6e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 144 agattgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggtg 203 ||||||||||| || | ||||||||| | |||||| ||||||||| ||||| || |||| Sbjct: 147355 agattgatctgttaccggaaatttcaatggctccacaaatcatgtcggatgttgagggtg 147414 Query: 204 ccctcaagtcaaagcatatgaagactgatgtcgatgagta 243 | || || ||||||| ||||||||||| || |||||||| Sbjct: 147415 ctctgaaatcaaagctgatgaagactgaggttgatgagta 147454
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence Length = 156933 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 1 gcatgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttc 60 |||||||||||||||||||||||| | || ||||||||||| |||||| |||| ||||| Sbjct: 80501 gcatgactttcctgaatttctgtgcaattaccacttcagtttctgtgacatgattccttc 80560 Query: 61 cagttgcattcaaatgcgcaatgtcattctt 91 ||||||||||||||||||||||||||||||| Sbjct: 80561 cagttgcattcaaatgcgcaatgtcattctt 80591 Score = 93.7 bits (47), Expect = 7e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 275 agtgatctgaagcaaaagttgctgctgccccagaatgaagctaatgttgctgggacacgc 334 |||||||||||||||||||| ||||||| || |||||| ||| |||||| ||||||||| Sbjct: 81572 agtgatctgaagcaaaagttattgctgccacaaaatgaaactagtgttgccgggacacgc 81631 Query: 335 tacaatgtgcctttgatgaattcacttgttctcta 369 |||||||| ||| | || ||||| ||||||||||| Sbjct: 81632 tacaatgttcctctcattaattcgcttgttctcta 81666 Score = 63.9 bits (32), Expect = 6e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 144 agattgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggtg 203 ||||||||||| || | ||||||||| | |||||| ||||||||| ||||| || |||| Sbjct: 81355 agattgatctgttaccggaaatttcaatggctccacaaatcatgtcggatgttgagggtg 81414 Query: 204 ccctcaagtcaaagcatatgaagactgatgtcgatgagta 243 | || || ||||||| ||||||||||| || |||||||| Sbjct: 81415 ctctgaaatcaaagctgatgaagactgaggttgatgagta 81454
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 1 gcatgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttc 60 |||||||||||||||||||||||| | || ||||||||||| |||||| |||| ||||| Sbjct: 146501 gcatgactttcctgaatttctgtgcaattaccacttcagtttctgtgacatgattccttc 146560 Query: 61 cagttgcattcaaatgcgcaatgtcattctt 91 ||||||||||||||||||||||||||||||| Sbjct: 146561 cagttgcattcaaatgcgcaatgtcattctt 146591 Score = 93.7 bits (47), Expect = 7e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 275 agtgatctgaagcaaaagttgctgctgccccagaatgaagctaatgttgctgggacacgc 334 |||||||||||||||||||| ||||||| || |||||| ||| |||||| ||||||||| Sbjct: 147572 agtgatctgaagcaaaagttattgctgccacaaaatgaaactagtgttgccgggacacgc 147631 Query: 335 tacaatgtgcctttgatgaattcacttgttctcta 369 |||||||| ||| | || ||||| ||||||||||| Sbjct: 147632 tacaatgttcctctcattaattcgcttgttctcta 147666 Score = 63.9 bits (32), Expect = 6e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 144 agattgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggtg 203 ||||||||||| || | ||||||||| | |||||| ||||||||| ||||| || |||| Sbjct: 147355 agattgatctgttaccggaaatttcaatggctccacaaatcatgtcggatgttgagggtg 147414 Query: 204 ccctcaagtcaaagcatatgaagactgatgtcgatgagta 243 | || || ||||||| ||||||||||| || |||||||| Sbjct: 147415 ctctgaaatcaaagctgatgaagactgaggttgatgagta 147454
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence Length = 162241 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 1 gcatgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttc 60 |||||||||||||||||||||||| | || ||||||||||| |||||| |||| ||||| Sbjct: 116117 gcatgactttcctgaatttctgtgcaattaccacttcagtttctgtgacatgattccttc 116058 Query: 61 cagttgcattcaaatgcgcaatgtcattctt 91 ||||||||||||||||||||||||||||||| Sbjct: 116057 cagttgcattcaaatgcgcaatgtcattctt 116027 Score = 93.7 bits (47), Expect = 7e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 275 agtgatctgaagcaaaagttgctgctgccccagaatgaagctaatgttgctgggacacgc 334 |||||||||||||||||||| ||||||| || |||||| ||| |||||| ||||||||| Sbjct: 115046 agtgatctgaagcaaaagttattgctgccacaaaatgaaactagtgttgccgggacacgc 114987 Query: 335 tacaatgtgcctttgatgaattcacttgttctcta 369 |||||||| ||| | || ||||| ||||||||||| Sbjct: 114986 tacaatgttcctctcattaattcgcttgttctcta 114952 Score = 63.9 bits (32), Expect = 6e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 144 agattgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggtg 203 ||||||||||| || | ||||||||| | |||||| ||||||||| ||||| || |||| Sbjct: 115263 agattgatctgttaccggaaatttcaatggctccacaaatcatgtcggatgttgagggtg 115204 Query: 204 ccctcaagtcaaagcatatgaagactgatgtcgatgagta 243 | || || ||||||| ||||||||||| || |||||||| Sbjct: 115203 ctctgaaatcaaagctgatgaagactgaggttgatgagta 115164
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 117 bits (59), Expect = 5e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 1 gcatgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttc 60 ||||||||| ||||| || || || || || ||||||||||| ||||| || || || | Sbjct: 42353 gcatgacttccctgagttcctttgcgattaccacttcagtttctgtgatgtcattccccc 42294 Query: 61 cagttgcattcaaatgcgcaatgtcattcttagtgcttttccgcgcaacatgagacttcc 120 ||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct: 42293 cagctgcattcaaatgcgcaatgttattcttagtgcttttccacgcaatatgagacttcc 42234 Query: 121 agacccatctactcc 135 ||| || |||||||| Sbjct: 42233 agatccctctactcc 42219 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 144 agattgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggtg 203 |||||||||| || ||||| |||||| | |||||| |||||||||| ||||| ||||||| Sbjct: 42118 agattgatcttcttgctgagatttcaattcctccaagaatcatgtctgatgttgatggtg 42059 Query: 204 ccctcaagtcaaagcatatgaagac 228 || | ||||||||||| |||||||| Sbjct: 42058 ccttaaagtcaaagcaaatgaagac 42034 Score = 50.1 bits (25), Expect = 0.009 Identities = 85/105 (80%) Strand = Plus / Minus Query: 265 atcctttttgagtgatctgaagcaaaagttgctgctgccccagaatgaagctaatgttgc 324 ||||||||| | |||| | ||||| ||||| || ||||| || || ||||| ||| |||| Sbjct: 41815 atcctttttaactgatttaaagcagaagttacttctgccgcaaaacgaagcaaatattgc 41756 Query: 325 tgggacacgctacaatgtgcctttgatgaattcacttgttctcta 369 |||||| || |||||||| ||| | | ||||||||||| ||||| Sbjct: 41755 tgggactcgttacaatgtacctcttgttaattcacttgtgctcta 41711 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 542 aatgcgatcgctaaccaactgcgctacccgaatagccacacacactacttctccttcat 600 |||||||| || ||||| |||||||| || || | |||||||||||| || |||||||| Sbjct: 41144 aatgcgattgccaaccagctgcgctatccaaacaaccacacacactatttttccttcat 41086
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 117 bits (59), Expect = 5e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 1 gcatgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttc 60 ||||||||| ||||| || || || || || ||||||||||| ||||| || || || | Sbjct: 21367340 gcatgacttccctgagttcctttgcgattaccacttcagtttctgtgatgtcattccccc 21367281 Query: 61 cagttgcattcaaatgcgcaatgtcattcttagtgcttttccgcgcaacatgagacttcc 120 ||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct: 21367280 cagctgcattcaaatgcgcaatgttattcttagtgcttttccacgcaatatgagacttcc 21367221 Query: 121 agacccatctactcc 135 ||| || |||||||| Sbjct: 21367220 agatccctctactcc 21367206 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 144 agattgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggtg 203 |||||||||| || ||||| |||||| | |||||| |||||||||| ||||| ||||||| Sbjct: 21367105 agattgatcttcttgctgagatttcaattcctccaagaatcatgtctgatgttgatggtg 21367046 Query: 204 ccctcaagtcaaagcatatgaagac 228 || | ||||||||||| |||||||| Sbjct: 21367045 ccttaaagtcaaagcaaatgaagac 21367021 Score = 50.1 bits (25), Expect = 0.009 Identities = 85/105 (80%) Strand = Plus / Minus Query: 265 atcctttttgagtgatctgaagcaaaagttgctgctgccccagaatgaagctaatgttgc 324 ||||||||| | |||| | ||||| ||||| || ||||| || || ||||| ||| |||| Sbjct: 21366802 atcctttttaactgatttaaagcagaagttacttctgccgcaaaacgaagcaaatattgc 21366743 Query: 325 tgggacacgctacaatgtgcctttgatgaattcacttgttctcta 369 |||||| || |||||||| ||| | | ||||||||||| ||||| Sbjct: 21366742 tgggactcgttacaatgtacctcttgttaattcacttgtgctcta 21366698 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 542 aatgcgatcgctaaccaactgcgctacccgaatagccacacacactacttctccttcat 600 |||||||| || ||||| |||||||| || || | |||||||||||| || |||||||| Sbjct: 21366131 aatgcgattgccaaccagctgcgctatccaaacaaccacacacactatttttccttcat 21366073
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 117 bits (59), Expect = 5e-23 Identities = 116/135 (85%) Strand = Plus / Minus Query: 1 gcatgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttc 60 ||||||||| ||||| || || || || || ||||||||||| ||||| || || || | Sbjct: 21378603 gcatgacttccctgagttcctttgcgattaccacttcagtttctgtgatgtcattccccc 21378544 Query: 61 cagttgcattcaaatgcgcaatgtcattcttagtgcttttccgcgcaacatgagacttcc 120 ||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct: 21378543 cagctgcattcaaatgcgcaatgttattcttagtgcttttccacgcaatatgagacttcc 21378484 Query: 121 agacccatctactcc 135 ||| || |||||||| Sbjct: 21378483 agatccctctactcc 21378469 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Minus Query: 144 agattgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggtg 203 |||||||||| || ||||| |||||| | |||||| |||||||||| ||||| ||||||| Sbjct: 21378368 agattgatcttcttgctgagatttcaattcctccaagaatcatgtctgatgttgatggtg 21378309 Query: 204 ccctcaagtcaaagcatatgaagac 228 || | ||||||||||| |||||||| Sbjct: 21378308 ccttaaagtcaaagcaaatgaagac 21378284 Score = 50.1 bits (25), Expect = 0.009 Identities = 85/105 (80%) Strand = Plus / Minus Query: 265 atcctttttgagtgatctgaagcaaaagttgctgctgccccagaatgaagctaatgttgc 324 ||||||||| | |||| | ||||| ||||| || ||||| || || ||||| ||| |||| Sbjct: 21378065 atcctttttaactgatttaaagcagaagttacttctgccgcaaaacgaagcaaatattgc 21378006 Query: 325 tgggacacgctacaatgtgcctttgatgaattcacttgttctcta 369 |||||| || |||||||| ||| | | ||||||||||| ||||| Sbjct: 21378005 tgggactcgttacaatgtacctcttgttaattcacttgtgctcta 21377961 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 542 aatgcgatcgctaaccaactgcgctacccgaatagccacacacactacttctccttcat 600 |||||||| || ||||| |||||||| || || | |||||||||||| || |||||||| Sbjct: 21377394 aatgcgattgccaaccagctgcgctatccaaacaaccacacacactatttttccttcat 21377336
>gb|AC151481.4| Medicago truncatula clone mth2-3m11, complete sequence Length = 99012 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 2 catgactttcctgaatttctgtgtgactatcacttcagtttttgtgacgtgatcccttcc 61 ||||||||||| || || || |||||||||||||| | |||||||| || || ||| | Sbjct: 50027 catgactttccagagttcctatgtgactatcactttaccttttgtgatgttattcctcca 50086 Query: 62 agttgcattcaaatgcgcaatgtcattcttagtgcttttccgcg 105 ||||||||||| ||||| ||| |||| || ||||| |||||||| Sbjct: 50087 agttgcattcagatgcgaaatatcatcctaagtgcatttccgcg 50130 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 551 gctaaccaactgcgctacccgaatagccacacacactacttctcctt 597 ||||||||||| || || || |||| |||||||||||||||||||| Sbjct: 51141 gctaaccaactacgttatcccaatactcacacacactacttctcctt 51187
>ref|NM_165678.2| Drosophila melanogaster CG1884-RB, transcript variant B (CG1884), mRNA Length = 7634 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 |||||||||| ||||| ||||| || || ||||||||||| || ||||| ||||||| | Sbjct: 6202 acttggatacggagggtcgctatctgttcttgaatgcgattgcgaaccagttgcgctatc 6261 Query: 570 cgaatagccacacacactacttc 592 | || |||||||| ||||||||| Sbjct: 6262 ccaacagccacacgcactacttc 6284
>ref|NM_136653.3| Drosophila melanogaster CG1884-RA, transcript variant A (CG1884), mRNA Length = 7640 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 |||||||||| ||||| ||||| || || ||||||||||| || ||||| ||||||| | Sbjct: 6208 acttggatacggagggtcgctatctgttcttgaatgcgattgcgaaccagttgcgctatc 6267 Query: 570 cgaatagccacacacactacttc 592 | || |||||||| ||||||||| Sbjct: 6268 ccaacagccacacgcactacttc 6290
>gb|AY058782.1| Drosophila melanogaster SD07194 full length cDNA Length = 2621 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 |||||||||| ||||| ||||| || || ||||||||||| || ||||| ||||||| | Sbjct: 1751 acttggatacggagggtcgctatctgttcttgaatgcgattgcgaaccagttgcgctatc 1810 Query: 570 cgaatagccacacacactacttc 592 | || |||||||| ||||||||| Sbjct: 1811 ccaacagccacacgcactacttc 1833
>gb|AC006472.2|AC006472 Drosophila melanogaster, chromosome 2R, region 45E1-46A2, BAC clone BACR48G21, complete sequence Length = 156346 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 |||||||||| ||||| ||||| || || ||||||||||| || ||||| ||||||| | Sbjct: 80318 acttggatacggagggtcgctatctgttcttgaatgcgattgcgaaccagttgcgctatc 80377 Query: 570 cgaatagccacacacactacttc 592 | || |||||||| ||||||||| Sbjct: 80378 ccaacagccacacgcactacttc 80400
>gb|AE003833.4| Drosophila melanogaster chromosome 2R, section 17 of 73 of the complete sequence Length = 297107 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 |||||||||| ||||| ||||| || || ||||||||||| || ||||| ||||||| | Sbjct: 260139 acttggatacggagggtcgctatctgttcttgaatgcgattgcgaaccagttgcgctatc 260080 Query: 570 cgaatagccacacacactacttc 592 | || |||||||| ||||||||| Sbjct: 260079 ccaacagccacacgcactacttc 260057
>gb|BT001446.1| Drosophila melanogaster GH26494 full insert cDNA Length = 2497 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 |||||||||| ||||| ||||| || || ||||||||||| || ||||| ||||||| | Sbjct: 1621 acttggatacggagggtcgctatctgttcttgaatgcgattgcgaaccagttgcgctatc 1680 Query: 570 cgaatagccacacacactacttc 592 | || |||||||| ||||||||| Sbjct: 1681 ccaacagccacacgcactacttc 1703
>dbj|AK114219.1| Ciona intestinalis cDNA, clone:cicl047e16, full insert sequence Length = 3824 Score = 60.0 bits (30), Expect = 9e-06 Identities = 69/82 (84%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 |||||||||| || || |||||| | ||||||||||| ||||| ||||| ||||| || | Sbjct: 3356 acttggatactgaaggtcgctacttgtttttgaatgctatcgcaaaccagctgcgttatc 3415 Query: 570 cgaatagccacacacactactt 591 | || |||||||| |||||||| Sbjct: 3416 caaacagccacactcactactt 3437
>ref|XM_511007.1| PREDICTED: Pan troglodytes LOC454137 (LOC454137), mRNA Length = 7209 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 6848 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 6907 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 6908 caaatagccacactcactacttc 6930
>ref|NM_016284.3| Homo sapiens CCR4-NOT transcription complex, subunit 1 (CNOT1), transcript variant 1, mRNA Length = 8449 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 7063 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 7122 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 7123 caaatagccacactcactacttc 7145
>dbj|AK092885.1| Homo sapiens cDNA FLJ35566 fis, clone SPLEN2005474, weakly similar to GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1 Length = 2282 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 1647 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 1706 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 1707 caaatagccacactcactacttc 1729
>dbj|AK075125.1| Homo sapiens cDNA FLJ90644 fis, clone PLACE1004168 Length = 2637 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 2402 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 2461 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 2462 caaatagccacactcactacttc 2484
>dbj|AK056927.1| Homo sapiens cDNA FLJ32365 fis, clone PUAEN1000161, weakly similar to GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1 Length = 4068 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 3433 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 3492 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 3493 caaatagccacactcactacttc 3515
>emb|BX537840.1|HSM805937 Homo sapiens mRNA; cDNA DKFZp686K24111 (from clone DKFZp686K24111); complete cds Length = 7848 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 7217 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 7276 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 7277 caaatagccacactcactacttc 7299
>emb|AL833549.1|HSM804862 Homo sapiens mRNA; cDNA DKFZp686N183 (from clone DKFZp686N183) Length = 7701 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 7062 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 7121 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 7122 caaatagccacactcactacttc 7144
>emb|AL832769.1|HSM804080 Homo sapiens mRNA; cDNA DKFZp686A017 (from clone DKFZp686A017) Length = 7687 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 7052 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 7111 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 7112 caaatagccacactcactacttc 7134
>gb|BC024317.1| Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA clone IMAGE:3913601), partial cds Length = 5137 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 4502 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 4561 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 4562 caaatagccacactcactacttc 4584
>gb|BC027969.2| Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA clone IMAGE:5225775) Length = 1413 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 717 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 776 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 777 caaatagccacactcactacttc 799
>gb|BC000779.2| Homo sapiens CCR4-NOT transcription complex, subunit 1, mRNA (cDNA clone IMAGE:3504586), partial cds Length = 1907 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 1261 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 1320 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 1321 caaatagccacactcactacttc 1343
>emb|AL117492.1|HSM801007 Homo sapiens mRNA; cDNA DKFZp434N241 (from clone DKFZp434N241); partial cds Length = 3572 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 2942 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 3001 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 3002 caaatagccacactcactacttc 3024
>dbj|AB023224.2| Homo sapiens mRNA for KIAA1007 protein, partial cds Length = 6518 Score = 54.0 bits (27), Expect = 6e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 5148 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacc 5207 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 5208 caaatagccacactcactacttc 5230
>ref|NM_100088.3| Arabidopsis thaliana transcription regulator AT1G02080 mRNA, complete cds Length = 7275 Score = 52.0 bits (26), Expect = 0.002 Identities = 176/226 (77%) Strand = Plus / Plus Query: 23 tgtgactatcacttcagtttttgtgacgtgatcccttccagttgcattcaaatgcgcaat 82 ||||| ||||| || | ||| ||||| ||||| ||||| |||||||| |||||||| ||| Sbjct: 6319 tgtgattatcattttactttctgtgatgtgattccttcaagttgcatacaaatgcggaat 6378 Query: 83 gtcattcttagtgcttttccgcgcaacatgagacttccagacccatctactcctaacttg 142 | || || ||| ||||||| || |||||||| ||||| || || ||||| || || || Sbjct: 6379 attatcctcagttcttttccacggaacatgaggcttcctgatccttctaccccaaattta 6438 Query: 143 aagattgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggt 202 ||||||||| || || |||| || || | |||| | ||| | || || || |||| | Sbjct: 6439 aagattgatttgttacctgagatagtagaagctccctgtatcctttctgaggttgatgct 6498 Query: 203 gccctcaagtcaaagcatatgaagactgatgtcgatgagtatctta 248 || || ||| ||||||| ||||||| ||| || ||||||||||||| Sbjct: 6499 gcgctaaaggcaaagcaaatgaagaatgacgtggatgagtatctta 6544
>gb|BT002823.1| Arabidopsis thaliana clone RAFL14-87-E12 (R20253) unknown protein (At1g02080) mRNA, partial cds Length = 2205 Score = 52.0 bits (26), Expect = 0.002 Identities = 176/226 (77%) Strand = Plus / Plus Query: 23 tgtgactatcacttcagtttttgtgacgtgatcccttccagttgcattcaaatgcgcaat 82 ||||| ||||| || | ||| ||||| ||||| ||||| |||||||| |||||||| ||| Sbjct: 1232 tgtgattatcattttactttctgtgatgtgattccttcaagttgcatacaaatgcggaat 1291 Query: 83 gtcattcttagtgcttttccgcgcaacatgagacttccagacccatctactcctaacttg 142 | || || ||| ||||||| || |||||||| ||||| || || ||||| || || || Sbjct: 1292 attatcctcagttcttttccacggaacatgaggcttcctgatccttctaccccaaattta 1351 Query: 143 aagattgatctgctagctgaaatttcagtacctccacgaatcatgtcagatgtcgatggt 202 ||||||||| || || |||| || || | |||| | ||| | || || || |||| | Sbjct: 1352 aagattgatttgttacctgagatagtagaagctccctgtatcctttctgaggttgatgct 1411 Query: 203 gccctcaagtcaaagcatatgaagactgatgtcgatgagtatctta 248 || || ||| ||||||| ||||||| ||| || ||||||||||||| Sbjct: 1412 gcgctaaaggcaaagcaaatgaagaatgacgtggatgagtatctta 1457
>ref|XM_848722.1| PREDICTED: Canis familiaris similar to CCR4-NOT transcription complex, subunit 1 isoform a (LOC612978), mRNA Length = 2291 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 540 tgaatgcgatcgctaaccaactgcgctacccgaatagccacacacactacttc 592 ||||||| || || || |||||||| ||||| ||||||||||| ||||||||| Sbjct: 1464 tgaatgccattgcaaatcaactgcggtacccaaatagccacactcactacttc 1516
>emb|CR749237.1| Homo sapiens mRNA; cDNA DKFZp686E0722 (from clone DKFZp686E0722) Length = 7428 Score = 48.1 bits (24), Expect = 0.035 Identities = 60/72 (83%) Strand = Plus / Plus Query: 521 gaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacccgaatagccac 580 ||||| ||||| || ||||||||||| || || || || || || ||||| ||||||||| Sbjct: 6052 gagggtcgctatctctttttgaatgcaattgcaaatcagctccggtacccaaatagccac 6111 Query: 581 acacactacttc 592 || ||||||||| Sbjct: 6112 actcactacttc 6123
>gb|AF110778.1|AF110778 Homo sapiens adrenal gland protein AD-005 mRNA, complete cds Length = 2274 Score = 46.1 bits (23), Expect = 0.14 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 510 acttggatacagaggggcgctacctatttttgaatgcgatcgctaaccaactgcgctacc 569 ||||||| || ||||| ||||| || ||||||||||| || || || || || || |||| Sbjct: 880 acttggacactgagggtcgctatctctttttgaatgcaattgcaaatca-ctccggtacc 938 Query: 570 cgaatagccacacacactacttc 592 | ||||||||||| ||||||||| Sbjct: 939 caaatagccacactcactacttc 961
>emb|AL731833.7| Mouse DNA sequence from clone RP23-72P19 on chromosome X, complete sequence Length = 170932 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 481 cactgaatttttcaaatatcttg 503 ||||||||||||||||||||||| Sbjct: 137866 cactgaatttttcaaatatcttg 137844
>ref|XM_613555.2| PREDICTED: Bos taurus similar to CCR4-NOT transcription complex, subunit 1 isoform a (LOC533968), mRNA Length = 7510 Score = 44.1 bits (22), Expect = 0.54 Identities = 46/54 (85%) Strand = Plus / Plus Query: 539 ttgaatgcgatcgctaaccaactgcgctacccgaatagccacacacactacttc 592 |||||||| || || || || ||||| ||||| ||||||||||| ||||||||| Sbjct: 6769 ttgaatgcaattgcaaatcagctgcggtacccaaatagccacactcactacttc 6822
>gb|AC009118.11| Homo sapiens chromosome 16 clone RP11-481J2, complete sequence Length = 187988 Score = 44.1 bits (22), Expect = 0.54 Identities = 55/66 (83%) Strand = Plus / Plus Query: 527 cgctacctatttttgaatgcgatcgctaaccaactgcgctacccgaatagccacacacac 586 ||||| || ||||||||||| || || || || || || ||||| ||||||||||| ||| Sbjct: 25071 cgctatctctttttgaatgcaattgcaaatcagctccggtacccaaatagccacactcac 25130 Query: 587 tacttc 592 |||||| Sbjct: 25131 tacttc 25136
>gb|AC010287.9| Homo sapiens chromosome 16 clone CTA-331F8, complete sequence Length = 198949 Score = 44.1 bits (22), Expect = 0.54 Identities = 55/66 (83%) Strand = Plus / Minus Query: 527 cgctacctatttttgaatgcgatcgctaaccaactgcgctacccgaatagccacacacac 586 ||||| || ||||||||||| || || || || || || ||||| ||||||||||| ||| Sbjct: 18125 cgctatctctttttgaatgcaattgcaaatcagctccggtacccaaatagccacactcac 18066 Query: 587 tacttc 592 |||||| Sbjct: 18065 tacttc 18060
>gb|AC004562.1|AC004562 Homo sapiens chromosome 17, clone hRPC.34_M_24, complete sequence Length = 133925 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 aattcacttgttctctacattg 374 |||||||||||||||||||||| Sbjct: 1491 aattcacttgttctctacattg 1470
>gb|AC002539.1|AC002539 Homo sapiens chromosome 17, clone 195o20, complete sequence Length = 87246 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 353 aattcacttgttctctacattg 374 |||||||||||||||||||||| Sbjct: 67131 aattcacttgttctctacattg 67152
>gb|AY780552.1| Uncultured Bacteroides sp. clone KB-1 1 16S ribosomal RNA gene, partial sequence Length = 1484 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tggatacagaggggcgctacc 533 ||||||||||||||||||||| Sbjct: 1226 tggatacagaggggcgctacc 1246
>emb|CR547121.11| Zebrafish DNA sequence from clone DKEY-118G10 in linkage group 8, complete sequence Length = 76347 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 aatggatatttttcagattga 474 ||||||||||||||||||||| Sbjct: 13511 aatggatatttttcagattga 13491
>emb|AJ493259.1|ABA493259 Acipenser baeri mRNA for keratin type IE (krt14 gene) Length = 1858 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tggatacagaggggcgctacc 533 ||||||||||||||||||||| Sbjct: 1038 tggatacagaggggcgctacc 1058
>gb|AC034159.7| Homo sapiens BAC clone RP11-344G13 from 4, complete sequence Length = 202555 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 aaagcatatgaagactgatgt 234 ||||||||||||||||||||| Sbjct: 115600 aaagcatatgaagactgatgt 115620
>emb|AL953914.11| Zebrafish DNA sequence from clone CH211-235I18 in linkage group 8, complete sequence Length = 151737 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 aatggatatttttcagattga 474 ||||||||||||||||||||| Sbjct: 105023 aatggatatttttcagattga 105043
>dbj|AB232559.1| Uncultured bacterium gene for 16S rRNA, partial sequence, clone:MPA2 Length = 1116 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tggatacagaggggcgctacc 533 ||||||||||||||||||||| Sbjct: 877 tggatacagaggggcgctacc 897
>dbj|AB195880.1| Uncultured bacterium gene for 16S rRNA, partial sequence Length = 1440 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tggatacagaggggcgctacc 533 ||||||||||||||||||||| Sbjct: 1187 tggatacagaggggcgctacc 1207
>dbj|AB195879.1| Uncultured bacterium gene for 16S rRNA, partial sequence Length = 1448 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tggatacagaggggcgctacc 533 ||||||||||||||||||||| Sbjct: 1224 tggatacagaggggcgctacc 1244
>emb|CT574154.1| Uncultured bacterium partial 16S rRNA gene from clone 060G06_B_SD_P93 Length = 1299 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tggatacagaggggcgctacc 533 ||||||||||||||||||||| Sbjct: 1153 tggatacagaggggcgctacc 1173
>emb|CR933154.1| Uncultured bacterium partial 16S rRNA gene from clone 009G12_B_SD_P15 Length = 1354 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tggatacagaggggcgctacc 533 ||||||||||||||||||||| Sbjct: 1190 tggatacagaggggcgctacc 1210
>emb|CR933316.1| Uncultured bacterium partial 16S rRNA gene from clone 060B03_B_SD_P93 Length = 1310 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tggatacagaggggcgctacc 533 ||||||||||||||||||||| Sbjct: 1164 tggatacagaggggcgctacc 1184
>emb|CR933253.1| Uncultured bacterium partial 16S rRNA gene from clone 053G03_B_DI_P58 Length = 1290 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 tggatacagaggggcgctacc 533 ||||||||||||||||||||| Sbjct: 1144 tggatacagaggggcgctacc 1164
>emb|Z81031.1|CEC02D4 Caenorhabditis elegans Cosmid C02D4, complete sequence Length = 28611 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 tggatatttttcagattgaaa 476 ||||||||||||||||||||| Sbjct: 6104 tggatatttttcagattgaaa 6084
>gb|U64852.3| Caenorhabditis elegans cosmid W01A11, complete sequence Length = 42924 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 actgaatttttcaaatatct 501 |||||||||||||||||||| Sbjct: 3297 actgaatttttcaaatatct 3316
>gb|AY007566.1| Lactococcus phage TP901-1 putative single stranded binding protein and replication protein genes, complete cds Length = 1413 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ctgaaatttcagtacctcca 178 |||||||||||||||||||| Sbjct: 448 ctgaaatttcagtacctcca 429
>gb|AC154861.2| Mus musculus BAC clone RP23-8E13 from chromosome 14, complete sequence Length = 209896 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 tagccacacacactacttct 593 |||||||||||||||||||| Sbjct: 16626 tagccacacacactacttct 16645
>gb|AC158943.9| Mus musculus chromosome 1, clone RP24-272N10, complete sequence Length = 186003 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 gactttcctgaatttctgtgtgac 28 ||||| |||||||||||||||||| Sbjct: 22850 gacttgcctgaatttctgtgtgac 22873
>gb|U64839.1| Caenorhabditis elegans cosmid ZK40, complete sequence Length = 21836 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 actgaatttttcaaatatct 501 |||||||||||||||||||| Sbjct: 16933 actgaatttttcaaatatct 16952
>gb|AC164581.7| Mus musculus 10 BAC RP23-45O2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199422 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 aatggatatttttcagattgaaac 477 |||||||| ||||||||||||||| Sbjct: 183234 aatggataattttcagattgaaac 183211
>gb|BC060349.1| Xenopus laevis hypothetical protein MGC68801, mRNA (cDNA clone MGC:68801 IMAGE:4203321), complete cds Length = 1703 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gaatgaagctaatgttgctg 326 |||||||||||||||||||| Sbjct: 194 gaatgaagctaatgttgctg 175
>emb|CR932175.1|CNS0KYGO Paramecium tetraurelia macronuclear, putative gene for the regulatory beta-subunit of casein kinase 2, isoform 1-2, complete gene Length = 968 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 587 tacttctccttcatcatact 606 |||||||||||||||||||| Sbjct: 465 tacttctccttcatcatact 446
>emb|AJ866975.1| Bacillus sphaericus ORF1, slfB gene, ORF2, ORF3, ORF4, ORF5 and ORF6, strain NCTC JG-A12 Length = 12385 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 atttttcaaatatcttgtaa 506 |||||||||||||||||||| Sbjct: 6644 atttttcaaatatcttgtaa 6625
>emb|Z93395.1|CEZC101 Caenorhabditis elegans Cosmid ZC101, complete sequence Length = 26147 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 aatttttcaaatatcttgta 505 |||||||||||||||||||| Sbjct: 13624 aatttttcaaatatcttgta 13605
>gb|AC104890.16| Mus musculus chromosome 1, clone RP23-260J11, complete sequence Length = 211081 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 gactttcctgaatttctgtgtgac 28 ||||| |||||||||||||||||| Sbjct: 127668 gacttgcctgaatttctgtgtgac 127691
>gb|BC084484.1| Xenopus tropicalis hypothetical LOC496505, mRNA (cDNA clone MGC:89439 IMAGE:6990776), complete cds Length = 2034 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gaatgaagctaatgttgctg 326 |||||||||||||||||||| Sbjct: 219 gaatgaagctaatgttgctg 200
>gb|AY118376.1| Drosophila melanogaster RE22982 full insert cDNA Length = 3756 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tacaatgtgcctttgatgaa 354 |||||||||||||||||||| Sbjct: 3723 tacaatgtgcctttgatgaa 3742
>gb|AC106899.5| Homo sapiens BAC clone RP11-734N2 from 2, complete sequence Length = 132562 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tgactttcctgaatttctgt 23 |||||||||||||||||||| Sbjct: 32079 tgactttcctgaatttctgt 32060
>gb|AC106898.5| Homo sapiens BAC clone RP11-310K19 from 4, complete sequence Length = 171846 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 tacaatggatatttttcaga 470 |||||||||||||||||||| Sbjct: 73687 tacaatggatatttttcaga 73668
>ref|NM_142495.1| Drosophila melanogaster CG14299-RA, transcript variant A (CG14299), mRNA Length = 7311 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tacaatgtgcctttgatgaa 354 |||||||||||||||||||| Sbjct: 3619 tacaatgtgcctttgatgaa 3638
>gb|AC024086.5| Homo sapiens chromosome 7 clone RP11-242F21, complete sequence Length = 153232 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 cactacttctccttcatcat 603 |||||||||||||||||||| Sbjct: 101996 cactacttctccttcatcat 101977
>ref|NM_001014640.1| Drosophila melanogaster CG14299-RB, transcript variant B (CG14299), mRNA Length = 3741 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tacaatgtgcctttgatgaa 354 |||||||||||||||||||| Sbjct: 3722 tacaatgtgcctttgatgaa 3741
>gb|AC021678.13| Homo sapiens chromosome 8, clone RP11-380I10, complete sequence Length = 181731 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 atttctgtgtgactatcact 35 |||||||||||||||||||| Sbjct: 116150 atttctgtgtgactatcact 116131
>gb|AC021856.7| Homo sapiens BAC clone RP11-553E5 from 4, complete sequence Length = 202507 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 actttcctgaatttctgtgt 25 |||||||||||||||||||| Sbjct: 76006 actttcctgaatttctgtgt 76025
>gb|AC084261.5| Homo sapiens chromosome 8, clone RP3-335L1, complete sequence Length = 159212 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 atttctgtgtgactatcact 35 |||||||||||||||||||| Sbjct: 126363 atttctgtgtgactatcact 126382
>gb|AC024301.10| Homo sapiens, clone RP11-686O16, complete sequence Length = 195269 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 ctatcacttcagtttttgtgacgt 51 ||||||||||||||||||| |||| Sbjct: 154045 ctatcacttcagtttttgtaacgt 154022
>emb|BX323448.7| Zebrafish DNA sequence from clone CH211-145B13 in linkage group 1, complete sequence Length = 150073 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ttgtaacaaacttggataca 520 |||||||||||||||||||| Sbjct: 35211 ttgtaacaaacttggataca 35192
>gb|AC154660.2| Mus musculus BAC clone RP24-271M20 from chromosome 14, complete sequence Length = 172152 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 492 tcaaatatcttgtaacaaac 511 |||||||||||||||||||| Sbjct: 43451 tcaaatatcttgtaacaaac 43432
>gb|AF304433.1|AF304433 Bacteriophage TP901-1, complete sequence Length = 37667 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 ctgaaatttcagtacctcca 178 |||||||||||||||||||| Sbjct: 6600 ctgaaatttcagtacctcca 6581
>gb|AC067801.4|AC067801 Homo sapiens chromosome 18, clone RP11-583B12, complete sequence Length = 174938 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 ctatcacttcagtttttgtgacgt 51 ||||||||||||||||||| |||| Sbjct: 137645 ctatcacttcagtttttgtaacgt 137622
>gb|AC007440.6|AC007440 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR37I09, complete sequence Length = 184621 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 catgtcagatgtcgatggtg 203 |||||||||||||||||||| Sbjct: 75365 catgtcagatgtcgatggtg 75346
>gb|AC007813.4|AC007813 Drosophila melanogaster, chromosome 3R, region 91C-91D, BAC clone BACR40J10, complete sequence Length = 160089 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tacaatgtgcctttgatgaa 354 |||||||||||||||||||| Sbjct: 51975 tacaatgtgcctttgatgaa 51956
>gb|AC007812.6|AC007812 Drosophila melanogaster, chromosome 3R, region 91C-91C, BAC clone BACR01F15, complete sequence Length = 186989 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tacaatgtgcctttgatgaa 354 |||||||||||||||||||| Sbjct: 135363 tacaatgtgcctttgatgaa 135344
>gb|AC009358.6|AC009358 Human Chromosome 7 clone RP11-191E5, complete sequence Length = 185124 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 584 cactacttctccttcatcat 603 |||||||||||||||||||| Sbjct: 98401 cactacttctccttcatcat 98382
>ref|NM_001011092.1| Xenopus tropicalis hypothetical LOC496505 (LOC496505), mRNA Length = 2034 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gaatgaagctaatgttgctg 326 |||||||||||||||||||| Sbjct: 219 gaatgaagctaatgttgctg 200
>emb|AL935146.13| Zebrafish DNA sequence from clone CH211-171D11 in linkage group 22, complete sequence Length = 161161 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 atttttcaaatatcttgtaa 506 |||||||||||||||||||| Sbjct: 105409 atttttcaaatatcttgtaa 105428
>gb|AC153949.3| Mus musculus 10 BAC RP24-366H8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145982 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 aatggatatttttcagattgaaac 477 |||||||| ||||||||||||||| Sbjct: 67772 aatggataattttcagattgaaac 67795
>gb|AE003723.5| Drosophila melanogaster chromosome 3R, section 61 of 118 of the complete sequence Length = 255619 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tacaatgtgcctttgatgaa 354 |||||||||||||||||||| Sbjct: 148108 tacaatgtgcctttgatgaa 148089
>emb|CR761088.2| Xenopus tropicalis finished cDNA, clone TEgg058p12 Length = 2123 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 gaatgaagctaatgttgctg 326 |||||||||||||||||||| Sbjct: 326 gaatgaagctaatgttgctg 307
>gb|AE003823.3| Drosophila melanogaster chromosome 2R, section 27 of 73 of the complete sequence Length = 292919 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 catgtcagatgtcgatggtg 203 |||||||||||||||||||| Sbjct: 236715 catgtcagatgtcgatggtg 236696
>emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chromosome 14, complete sequence Length = 218673 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 574 tagccacacacactacttct 593 |||||||||||||||||||| Sbjct: 92720 tagccacacacactacttct 92701
>dbj|AP003041.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-567M21, complete sequence Length = 188172 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 451 tacaatggatatttttcagattga 474 |||||| ||||||||||||||||| Sbjct: 128252 tacaattgatatttttcagattga 128275
>gb|L15260.1|HUM63R Human (clone: pHyTM1/63(R)) DNA sequence Length = 191 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ccagaatgaagctaatgttg 323 |||||||||||||||||||| Sbjct: 191 ccagaatgaagctaatgttg 172
>gb|L13458.1|CELUNC52X Caenorhabditis elegans basement membrane proteoglycan (unc-52) homologous gene, exons 1-25, complete cds Length = 16529 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 aatttttcaaatatcttgta 505 |||||||||||||||||||| Sbjct: 967 aatttttcaaatatcttgta 986
>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence Length = 106973 Score = 40.1 bits (20), Expect = 8.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 213 caaagcatatgaagactgatgtcgatgagtatctta 248 ||||||| ||||||| ||| || ||||||||||||| Sbjct: 36168 caaagcaaatgaagaatgacgtggatgagtatctta 36203 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,907,409 Number of Sequences: 3902068 Number of extensions: 5907409 Number of successful extensions: 106233 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 105988 Number of HSP's gapped (non-prelim): 245 length of query: 622 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 599 effective length of database: 17,143,297,704 effective search space: 10268835324696 effective search space used: 10268835324696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)