ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25n22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108662.1| Zea mays PCO146921 mRNA sequence Length = 2037 Score = 248 bits (125), Expect = 1e-62 Identities = 222/255 (87%) Strand = Plus / Plus Query: 127 gggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcgctg 186 |||||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 631 gggaggctggggcacggcaactccagcgacgtcttcacgccccagcctgtcaaggcgctg 690 Query: 187 caggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcaccatg 246 |||||| ||||||| || ||| | ||||| | ||| ||||| || || |||||||||||| Sbjct: 691 caggggctcaagatcaaacagattgcctgcggggacagccattgtcttgccgtcaccatg 750 Query: 247 gccggtgaagtgctcagttgggggcgtaaccaaaatggccagcttggtcttggaactact 306 ||||| ||||||| |||||||| ||||||||||| || ||||| || |||||||| ||| Sbjct: 751 gccggagaagtgcagagttggggccgtaaccaaaacggacagctaggccttggaaccact 810 Query: 307 gaagattcgctgctcccacaaacgattcaagcttttgagggtatttctgtgaagatgatt 366 ||||| |||||||||||||||| |||||| ||||||||| || ||| ||||| |||||| Sbjct: 811 gaagactcgctgctcccacaaaagattcaggcttttgagagtgtttgcgtgaaaatgatt 870 Query: 367 gctgctggtgccgaa 381 ||||| ||||||||| Sbjct: 871 gctgccggtgccgaa 885 Score = 127 bits (64), Expect = 3e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 22 ggcttcgacgcgccggggatcacgtccgtcatctgcggggcggaccacaccaccgcctac 81 |||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||| Sbjct: 526 ggcttcgacgcgcccgcgatcacgtccgtcatctgcggcgccgaccacaccaccgcctac 585 Query: 82 tccgaggacgagcaccaggtctacagct 109 ||||||||||||| ||||||||||||| Sbjct: 586 tccgaggacgagctgcaggtctacagct 613
>ref|XM_472578.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1362 Score = 238 bits (120), Expect = 1e-59 Identities = 220/254 (86%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcg 183 ||||||||||||||||| |||||||||| |||||| ||||| || ||||| |||||||| Sbjct: 316 ttcgggaggctcggccatggcaactccagcgacgtgttcactcctcagccagtcaaggcc 375 Query: 184 ctgcaggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcacc 243 ||||||||||| ||||| |||||| |||| || | |||||||| || || |||||||| Sbjct: 376 ctgcaggggataaagatcaagcagatagcttgcggcgatagccattgtcttgccgtcact 435 Query: 244 atggccggtgaagtgctcagttgggggcgtaaccaaaatggccagcttggtcttggaact 303 ||||| |||||||||| ||||||||||| |||||||| || ||||||||||||||||| Sbjct: 436 atggcaggtgaagtgcaaagttgggggcgcaaccaaaacggacagcttggtcttggaacc 495 Query: 304 actgaagattcgctgctcccacaaacgattcaagcttttgagggtatttctgtgaagatg 363 |||||||| || |||||||||||| ||||||| |||||||||| ||| |||||| ||| Sbjct: 496 actgaagactcattgctcccacaaaagattcaatcttttgagggagtttgtgtgaaaatg 555 Query: 364 attgctgctggtgc 377 |||||||||||||| Sbjct: 556 attgctgctggtgc 569 Score = 119 bits (60), Expect = 7e-24 Identities = 75/80 (93%) Strand = Plus / Plus Query: 30 cgcgccggggatcacgtccgtcatctgcggggcggaccacaccaccgcctactccgagga 89 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 222 cgcgccggggatcacgtcggtcatctgcggcgccgaccacaccaccgcctactccgagga 281 Query: 90 cgagcaccaggtctacagct 109 |||||| ||||| ||||||| Sbjct: 282 cgagcagcaggtgtacagct 301
>dbj|AK100857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123M01, full insert sequence Length = 2021 Score = 238 bits (120), Expect = 1e-59 Identities = 220/254 (86%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcg 183 ||||||||||||||||| |||||||||| |||||| ||||| || ||||| |||||||| Sbjct: 659 ttcgggaggctcggccatggcaactccagcgacgtgttcactcctcagccagtcaaggcc 718 Query: 184 ctgcaggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcacc 243 ||||||||||| ||||| |||||| |||| || | |||||||| || || |||||||| Sbjct: 719 ctgcaggggataaagatcaagcagatagcttgcggcgatagccattgtcttgccgtcact 778 Query: 244 atggccggtgaagtgctcagttgggggcgtaaccaaaatggccagcttggtcttggaact 303 ||||| |||||||||| ||||||||||| |||||||| || ||||||||||||||||| Sbjct: 779 atggcaggtgaagtgcaaagttgggggcgcaaccaaaacggacagcttggtcttggaacc 838 Query: 304 actgaagattcgctgctcccacaaacgattcaagcttttgagggtatttctgtgaagatg 363 |||||||| || |||||||||||| ||||||| |||||||||| ||| |||||| ||| Sbjct: 839 actgaagactcattgctcccacaaaagattcaatcttttgagggagtttgtgtgaaaatg 898 Query: 364 attgctgctggtgc 377 |||||||||||||| Sbjct: 899 attgctgctggtgc 912 Score = 119 bits (60), Expect = 7e-24 Identities = 75/80 (93%) Strand = Plus / Plus Query: 30 cgcgccggggatcacgtccgtcatctgcggggcggaccacaccaccgcctactccgagga 89 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 565 cgcgccggggatcacgtcggtcatctgcggcgccgaccacaccaccgcctactccgagga 624 Query: 90 cgagcaccaggtctacagct 109 |||||| ||||| ||||||| Sbjct: 625 cgagcagcaggtgtacagct 644
>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence Length = 127952 Score = 123 bits (62), Expect = 4e-25 Identities = 117/136 (86%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcg 183 ||||||||||||||||| |||||||||| |||||| ||||| || ||||| |||||||| Sbjct: 126266 ttcgggaggctcggccatggcaactccagcgacgtgttcactcctcagccagtcaaggcc 126325 Query: 184 ctgcaggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcacc 243 ||||||||||| ||||| |||||| |||| || | |||||||| || || |||||||| Sbjct: 126326 ctgcaggggataaagatcaagcagatagcttgcggcgatagccattgtcttgccgtcact 126385 Query: 244 atggccggtgaagtgc 259 ||||| |||||||||| Sbjct: 126386 atggcaggtgaagtgc 126401 Score = 119 bits (60), Expect = 7e-24 Identities = 75/80 (93%) Strand = Plus / Plus Query: 30 cgcgccggggatcacgtccgtcatctgcggggcggaccacaccaccgcctactccgagga 89 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 126172 cgcgccggggatcacgtcggtcatctgcggcgccgaccacaccaccgcctactccgagga 126231 Query: 90 cgagcaccaggtctacagct 109 |||||| ||||| ||||||| Sbjct: 126232 cgagcagcaggtgtacagct 126251 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 262 agttgggggcgtaaccaaaatggccagcttggtcttggaactactgaagattcgctgctc 321 ||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 126884 agttgggggcgcaaccaaaacggacagcttggtcttggaaccactgaagactcattgctc 126943 Query: 322 ccacaaacgattcaagcttttgagg 346 ||||||| ||||||| ||||||||| Sbjct: 126944 ccacaaaagattcaatcttttgagg 126968 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 tgtgaagatgattgctgctggtgc 377 |||||| ||||||||||||||||| Sbjct: 127455 tgtgaaaatgattgctgctggtgc 127478
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 123 bits (62), Expect = 4e-25 Identities = 117/136 (86%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcg 183 ||||||||||||||||| |||||||||| |||||| ||||| || ||||| |||||||| Sbjct: 21691724 ttcgggaggctcggccatggcaactccagcgacgtgttcactcctcagccagtcaaggcc 21691783 Query: 184 ctgcaggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcacc 243 ||||||||||| ||||| |||||| |||| || | |||||||| || || |||||||| Sbjct: 21691784 ctgcaggggataaagatcaagcagatagcttgcggcgatagccattgtcttgccgtcact 21691843 Query: 244 atggccggtgaagtgc 259 ||||| |||||||||| Sbjct: 21691844 atggcaggtgaagtgc 21691859 Score = 119 bits (60), Expect = 7e-24 Identities = 75/80 (93%) Strand = Plus / Plus Query: 30 cgcgccggggatcacgtccgtcatctgcggggcggaccacaccaccgcctactccgagga 89 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 21691630 cgcgccggggatcacgtcggtcatctgcggcgccgaccacaccaccgcctactccgagga 21691689 Query: 90 cgagcaccaggtctacagct 109 |||||| ||||| ||||||| Sbjct: 21691690 cgagcagcaggtgtacagct 21691709 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 262 agttgggggcgtaaccaaaatggccagcttggtcttggaactactgaagattcgctgctc 321 ||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 21692342 agttgggggcgcaaccaaaacggacagcttggtcttggaaccactgaagactcattgctc 21692401 Query: 322 ccacaaacgattcaagcttttgagg 346 ||||||| ||||||| ||||||||| Sbjct: 21692402 ccacaaaagattcaatcttttgagg 21692426 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 tgtgaagatgattgctgctggtgc 377 |||||| ||||||||||||||||| Sbjct: 21692913 tgtgaaaatgattgctgctggtgc 21692936
>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20, complete sequence Length = 141915 Score = 123 bits (62), Expect = 4e-25 Identities = 117/136 (86%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcg 183 ||||||||||||||||| |||||||||| |||||| ||||| || ||||| |||||||| Sbjct: 3341 ttcgggaggctcggccatggcaactccagcgacgtgttcactcctcagccagtcaaggcc 3400 Query: 184 ctgcaggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcacc 243 ||||||||||| ||||| |||||| |||| || | |||||||| || || |||||||| Sbjct: 3401 ctgcaggggataaagatcaagcagatagcttgcggcgatagccattgtcttgccgtcact 3460 Query: 244 atggccggtgaagtgc 259 ||||| |||||||||| Sbjct: 3461 atggcaggtgaagtgc 3476 Score = 119 bits (60), Expect = 7e-24 Identities = 75/80 (93%) Strand = Plus / Plus Query: 30 cgcgccggggatcacgtccgtcatctgcggggcggaccacaccaccgcctactccgagga 89 |||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 3247 cgcgccggggatcacgtcggtcatctgcggcgccgaccacaccaccgcctactccgagga 3306 Query: 90 cgagcaccaggtctacagct 109 |||||| ||||| ||||||| Sbjct: 3307 cgagcagcaggtgtacagct 3326 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 262 agttgggggcgtaaccaaaatggccagcttggtcttggaactactgaagattcgctgctc 321 ||||||||||| |||||||| || ||||||||||||||||| |||||||| || ||||| Sbjct: 3959 agttgggggcgcaaccaaaacggacagcttggtcttggaaccactgaagactcattgctc 4018 Query: 322 ccacaaacgattcaagcttttgagg 346 ||||||| ||||||| ||||||||| Sbjct: 4019 ccacaaaagattcaatcttttgagg 4043 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 tgtgaagatgattgctgctggtgc 377 |||||| ||||||||||||||||| Sbjct: 4530 tgtgaaaatgattgctgctggtgc 4553
>ref|XM_506822.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470G10.15 mRNA Length = 1691 Score = 93.7 bits (47), Expect = 4e-16 Identities = 204/257 (79%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcg 183 ||||||||||| || ||||||||||||| |||||| |||| || ||||| || ||||| Sbjct: 365 ttcgggaggctgggtcacggcaactccagcgacgtgttcaacccgcagcccatccaggcg 424 Query: 184 ctgcaggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcacc 243 || ||||| || ||| | ||| | ||||| | || ||||||||||| ||||||||| Sbjct: 425 ctccagggcgtccggatcacccagatcgcctgcggcgacagccactgcctcgccgtcacc 484 Query: 244 atggccggtgaagtgctcagttgggggcgtaaccaaaatggccagcttggtcttggaact 303 | ||||| | || | ||| ||||| || || |||||||| |||||||| || |||| Sbjct: 485 gtcgccggccatgtccacagctggggacgcaatcaaaatggtcagcttggcctcggaaac 544 Query: 304 actgaagattcgctgctcccacaaacgattcaagcttttgagggtatttctgtgaagatg 363 || || || || |||||||||||| ||||||||||||||||||| | ||| || ||| Sbjct: 545 accgaggactccttgctcccacaaaagattcaagcttttgagggtgtccgtgtaaaaatg 604 Query: 364 attgctgctggtgccga 380 ||||||||||||||||| Sbjct: 605 attgctgctggtgccga 621 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 48 cgtcatctgcggggcggaccacaccaccgcctactccgaggacgagcaccaggtctacag 107 |||||||||||| || ||||||||||||||||||||||| || |||| ||| ||||||| Sbjct: 289 cgtcatctgcggcgccgaccacaccaccgcctactccgacgaggagctgcagctctacag 348 Query: 108 ct 109 || Sbjct: 349 ct 350
>ref|XM_466189.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1675 Score = 93.7 bits (47), Expect = 4e-16 Identities = 204/257 (79%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcg 183 ||||||||||| || ||||||||||||| |||||| |||| || ||||| || ||||| Sbjct: 366 ttcgggaggctgggtcacggcaactccagcgacgtgttcaacccgcagcccatccaggcg 425 Query: 184 ctgcaggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcacc 243 || ||||| || ||| | ||| | ||||| | || ||||||||||| ||||||||| Sbjct: 426 ctccagggcgtccggatcacccagatcgcctgcggcgacagccactgcctcgccgtcacc 485 Query: 244 atggccggtgaagtgctcagttgggggcgtaaccaaaatggccagcttggtcttggaact 303 | ||||| | || | ||| ||||| || || |||||||| |||||||| || |||| Sbjct: 486 gtcgccggccatgtccacagctggggacgcaatcaaaatggtcagcttggcctcggaaac 545 Query: 304 actgaagattcgctgctcccacaaacgattcaagcttttgagggtatttctgtgaagatg 363 || || || || |||||||||||| ||||||||||||||||||| | ||| || ||| Sbjct: 546 accgaggactccttgctcccacaaaagattcaagcttttgagggtgtccgtgtaaaaatg 605 Query: 364 attgctgctggtgccga 380 ||||||||||||||||| Sbjct: 606 attgctgctggtgccga 622 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 48 cgtcatctgcggggcggaccacaccaccgcctactccgaggacgagcaccaggtctacag 107 |||||||||||| || ||||||||||||||||||||||| || |||| ||| ||||||| Sbjct: 290 cgtcatctgcggcgccgaccacaccaccgcctactccgacgaggagctgcagctctacag 349 Query: 108 ct 109 || Sbjct: 350 ct 351
>dbj|AK069920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G23, full insert sequence Length = 1675 Score = 93.7 bits (47), Expect = 4e-16 Identities = 204/257 (79%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcg 183 ||||||||||| || ||||||||||||| |||||| |||| || ||||| || ||||| Sbjct: 366 ttcgggaggctgggtcacggcaactccagcgacgtgttcaacccgcagcccatccaggcg 425 Query: 184 ctgcaggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcacc 243 || ||||| || ||| | ||| | ||||| | || ||||||||||| ||||||||| Sbjct: 426 ctccagggcgtccggatcacccagatcgcctgcggcgacagccactgcctcgccgtcacc 485 Query: 244 atggccggtgaagtgctcagttgggggcgtaaccaaaatggccagcttggtcttggaact 303 | ||||| | || | ||| ||||| || || |||||||| |||||||| || |||| Sbjct: 486 gtcgccggccatgtccacagctggggacgcaatcaaaatggtcagcttggcctcggaaac 545 Query: 304 actgaagattcgctgctcccacaaacgattcaagcttttgagggtatttctgtgaagatg 363 || || || || |||||||||||| ||||||||||||||||||| | ||| || ||| Sbjct: 546 accgaggactccttgctcccacaaaagattcaagcttttgagggtgtccgtgtaaaaatg 605 Query: 364 attgctgctggtgccga 380 ||||||||||||||||| Sbjct: 606 attgctgctggtgccga 622 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 48 cgtcatctgcggggcggaccacaccaccgcctactccgaggacgagcaccaggtctacag 107 |||||||||||| || ||||||||||||||||||||||| || |||| ||| ||||||| Sbjct: 290 cgtcatctgcggcgccgaccacaccaccgcctactccgacgaggagctgcagctctacag 349 Query: 108 ct 109 || Sbjct: 350 ct 351
>dbj|AK060250.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-B02, full insert sequence Length = 1691 Score = 85.7 bits (43), Expect = 1e-13 Identities = 203/257 (78%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttcacgccccagccggtcaaggcg 183 ||||||||||| || ||||||||||||| |||||| |||| || | ||| || ||||| Sbjct: 365 ttcgggaggctgggtcacggcaactccagcgacgtgttcaacccgcggcccatccaggcg 424 Query: 184 ctgcaggggatcaagatnaagcagctagcctgtgnggatagccactgcctggccgtcacc 243 || ||||| || ||| | ||| | ||||| | || ||||||||||| ||||||||| Sbjct: 425 ctccagggcgtccggatcacccagatcgcctgcggcgacagccactgcctcgccgtcacc 484 Query: 244 atggccggtgaagtgctcagttgggggcgtaaccaaaatggccagcttggtcttggaact 303 | ||||| | || | ||| ||||| || || |||||||| |||||||| || |||| Sbjct: 485 gtcgccggccatgtccacagctggggacgcaatcaaaatggtcagcttggcctcggaaac 544 Query: 304 actgaagattcgctgctcccacaaacgattcaagcttttgagggtatttctgtgaagatg 363 || || || || |||||||||||| ||||||||||||||||||| | ||| || ||| Sbjct: 545 accgaggactccttgctcccacaaaagattcaagcttttgagggtgtccgtgtaaaaatg 604 Query: 364 attgctgctggtgccga 380 ||||||||||||||||| Sbjct: 605 attgctgctggtgccga 621 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 48 cgtcatctgcggggcggaccacaccaccgcctactccgaggacgagcaccaggtctacag 107 |||||||||||| || ||||||||||||||||||||||| || |||| ||| ||||||| Sbjct: 289 cgtcatctgcggcgccgaccacaccaccgcctactccgacgaggagctgcagctctacag 348 Query: 108 ct 109 || Sbjct: 349 ct 350
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 48 cgtcatctgcggggcggaccacaccaccgcctactccgaggacgagcaccaggtctacag 107 |||||||||||| || ||||||||||||||||||||||| || |||| ||| ||||||| Sbjct: 20933633 cgtcatctgcggcgccgaccacaccaccgcctactccgacgaggagctgcagctctacag 20933692 Query: 108 ct 109 || Sbjct: 20933693 ct 20933694 Score = 54.0 bits (27), Expect = 3e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 260 tcagttgggggcgtaaccaaaatggccagcttggtcttggaactactgaagattcgctgc 319 |||| ||||| || || |||||||| |||||||| || |||| || || || || ||| Sbjct: 20934679 tcagctggggacgcaatcaaaatggtcagcttggcctcggaaacaccgaggactccttgc 20934738 Query: 320 tcccacaaacgattcaagcttttgagg 346 ||||||||| ||||||||||||||||| Sbjct: 20934739 tcccacaaaagattcaagcttttgagg 20934765 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttca 163 ||||||||||| || ||||||||||||| |||||| |||| Sbjct: 20933792 ttcgggaggctgggtcacggcaactccagcgacgtgttca 20933831 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 atgattgctgctggtgccga 380 |||||||||||||||||||| Sbjct: 20935557 atgattgctgctggtgccga 20935576
>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470G10 Length = 145419 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 48 cgtcatctgcggggcggaccacaccaccgcctactccgaggacgagcaccaggtctacag 107 |||||||||||| || ||||||||||||||||||||||| || |||| ||| ||||||| Sbjct: 57105 cgtcatctgcggcgccgaccacaccaccgcctactccgacgaggagctgcagctctacag 57164 Query: 108 ct 109 || Sbjct: 57165 ct 57166 Score = 54.0 bits (27), Expect = 3e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 260 tcagttgggggcgtaaccaaaatggccagcttggtcttggaactactgaagattcgctgc 319 |||| ||||| || || |||||||| |||||||| || |||| || || || || ||| Sbjct: 58151 tcagctggggacgcaatcaaaatggtcagcttggcctcggaaacaccgaggactccttgc 58210 Query: 320 tcccacaaacgattcaagcttttgagg 346 ||||||||| ||||||||||||||||| Sbjct: 58211 tcccacaaaagattcaagcttttgagg 58237 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Plus Query: 124 ttcgggaggctcggccacggcaactccaccgacgtcttca 163 ||||||||||| || ||||||||||||| |||||| |||| Sbjct: 57264 ttcgggaggctgggtcacggcaactccagcgacgtgttca 57303 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 atgattgctgctggtgccga 380 |||||||||||||||||||| Sbjct: 59029 atgattgctgctggtgccga 59048
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 cgacgcgccggggatcacgtc 47 ||||||||||||||||||||| Sbjct: 1778698 cgacgcgccggggatcacgtc 1778718
>emb|AL805902.5| Mouse DNA sequence from clone RP23-224M4 on chromosome X, complete sequence Length = 75376 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 179 aggcgctgcaggggatcaaga 199 ||||||||||||||||||||| Sbjct: 16344 aggcgctgcaggggatcaaga 16324
>ref|XM_361377.1| Magnaporthe grisea 70-15 hypothetical protein (MG03851.4) partial mRNA Length = 561 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 163 acgccccagccggtcaaggcgctgcagg 190 |||||| ||| ||||||||||||||||| Sbjct: 106 acgcccgagcaggtcaaggcgctgcagg 133
>gb|AC127170.11| Medicago truncatula clone mth2-35d10, complete sequence Length = 114143 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 321 cccacaaacgattcaagcttttga 344 ||||||| |||||||||||||||| Sbjct: 111460 cccacaagcgattcaagcttttga 111483
>gb|AC154610.3| Mus musculus BAC clone RP23-335A11 from chromosome 13, complete sequence Length = 201893 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 gcttttgagggtatttctgt 356 |||||||||||||||||||| Sbjct: 32688 gcttttgagggtatttctgt 32707 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,204,284 Number of Sequences: 3902068 Number of extensions: 2204284 Number of successful extensions: 46012 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45865 Number of HSP's gapped (non-prelim): 139 length of query: 381 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 359 effective length of database: 17,147,199,772 effective search space: 6155844718148 effective search space used: 6155844718148 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
