ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags26c17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105047.1| Zea mays PCO111184 mRNA sequence Length = 919 Score = 527 bits (266), Expect = e-146 Identities = 473/542 (87%) Strand = Plus / Plus Query: 34 atggcggcgtctggattcggaggcggcgaggcgttcccgctgtcgtctgcggcgggggcc 93 |||||||| || || ||||| |||||||||||||||| ||| ||| | ||| |||||||| Sbjct: 126 atggcggcttcggggttcggcggcggcgaggcgttccggctctcggccgcgccgggggcc 185 Query: 94 ggtgcgctgaagctgcacaagggcgacatcaccctctggtccgtcgacggcgccaccgac 153 || |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 186 ggcttactgaagctgcacaagggcgacatcaccctctggtccgtcgactgcgccaccgac 245 Query: 154 gccatcgtcaatgctgctaatgaacgaatgcttggagggggaggtgttgatggagctata 213 |||||||| |||||||||||||| |||||| | || || ||||||||||||||||||||| Sbjct: 246 gccatcgttaatgctgctaatgagcgaatgttaggtggcggaggtgttgatggagctata 305 Query: 214 catcaagctgctgggccacaacttgtagaagcatgtcgtaaagttccagaggttaaacct 273 |||||||||||||| ||| | || || ||||||| || |||||||||||||| ||||| Sbjct: 306 catcaagctgctggaccagagctagtgcaagcatgccggaaagttccagaggtcaaacca 365 Query: 274 ggagtccgttgccctactggagaagctagaattactccagcttttgagcttcccgtgtcc 333 ||||||||||| ||||||||||||||||| |||||||| |||||||||||||| | || Sbjct: 366 ggagtccgttgtcctactggagaagctaggattactcctgcttttgagcttcctgcctct 425 Query: 334 cgtgtgatccatacagttgggcccatatatgatatggacaggaagcctgaggtgtcatta 393 || ||||| || || ||||| || ||||||||| |||||| | | ||||||||||||||| Sbjct: 426 cgggtgattcacactgttggccctatatatgatttggacaagcatcctgaggtgtcatta 485 Query: 394 aagaatgcatacgaaaatagcttaaagctggctaaagagaatggcattcagtacattgca 453 ||||| || || ||||||||||| ||||| ||||| || ||||||||||||||||| ||| Sbjct: 486 aagaaggcctatgaaaatagcttgaagcttgctaaggataatggcattcagtacatcgca 545 Query: 454 ttccctgctatatcttgtggtatttttcgttaccctccaaaggaagcatcaaacatagct 513 ||||||||||||||||||||| ||| |||||| ||||| |||||||||||||| |||||| Sbjct: 546 ttccctgctatatcttgtggtgtttatcgttatcctcccaaggaagcatcaaaaatagct 605 Query: 514 atttcagctgctcaacaattttcaggcgatattaaagaggtgcattttgttctgttctcg 573 |||| | || ||| ||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 606 gtttctaccgcacaaaaattttcagaggatatcaaagaggtgcattttgttctgttctcg 665 Query: 574 ga 575 || Sbjct: 666 ga 667
>dbj|AK070095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042J09, full insert sequence Length = 957 Score = 436 bits (220), Expect = e-119 Identities = 448/524 (85%) Strand = Plus / Plus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| |||||| | | ||||| || || ||||| |||||||| ||| Sbjct: 128 ggcggcgaggcgttccgtctgtcggcggatgcgggcgcgggcgcgctcaagctgcagaag 187 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgtcaatgctgctaat 174 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 188 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgttaatgctgctaat 247 Query: 175 gaacgaatgcttggagggggaggtgttgatggagctatacatcaagctgctgggccacaa 234 || |||||||| ||||| |||||||| ||||||||||||| || | ||||||| || || Sbjct: 248 gagcgaatgctaggaggtggaggtgtagatggagctatacgtcgaactgctggacctgaa 307 Query: 235 cttgtagaagcatgtcgtaaagttccagaggttaaacctggagtccgttgccctactgga 294 || ||||| ||||| ||||||||||||||||| ||| ||||||| || ||||| |||||| Sbjct: 308 ctcgtagaggcatgccgtaaagttccagaggtcaaatctggagttcgctgccccactgga 367 Query: 295 gaagctagaattactccagcttttgagcttcccgtgtcccgtgtgatccatacagttggg 354 |||||||| ||||||||||| || ||||||| || ||||| ||||| || || |||||| Sbjct: 368 gaagctaggattactccagcattcaagcttcctgtttcccgcgtgatacacactgttggg 427 Query: 355 cccatatatgatatggacaggaagcctgaggtgtcattaaagaatgcatacgaaaatagc 414 ||||||||||||||||||| | | |||||||| || ||||| ||||| ||| ||||||| Sbjct: 428 cccatatatgatatggacaagcaacctgaggtctccttaaataatgcctacacaaatagc 487 Query: 415 ttaaagctggctaaagagaatggcattcagtacattgcattccctgctatatcttgtggt 474 || ||||| |||||| ||||||| ||||| ||||||||||| ||||| || ||||||||| Sbjct: 488 ttgaagctcgctaaacagaatggtattcaatacattgcattacctgcaatttcttgtggt 547 Query: 475 atttttcgttaccctccaaaggaagcatcaaacatagctatttcagctgctcaacaattt 534 ||| |||||| ||||||||||||||||| || || ||| |||| |||| |||| |||| Sbjct: 548 gtttatcgttatcctccaaaggaagcatcgaagattgctgtttctactgcacaacgattt 607 Query: 535 tcaggcgatattaaagaggtgcattttgttctgttctcggatga 578 || |||||||||||||| || ||||||||||| || ||||| Sbjct: 608 tctaatgatattaaagaggtacactttgttctgttttctgatga 651
>ref|XM_480012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 804 Score = 184 bits (93), Expect = 2e-43 Identities = 138/153 (90%) Strand = Plus / Plus Query: 56 gcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaagg 115 ||||||||||||||| ||||||| | | ||||| || || || || ||||||||||||| Sbjct: 203 gcggcgaggcgttccggctgtcggcggatgcgggcgcgggcgcactcaagctgcacaagg 262 Query: 116 gcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgtcaatgctgctaatg 175 |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| Sbjct: 263 gcgacatcaccctctggtccgtcgacggcgccactgtcgccatcgttaatgctgctaatg 322 Query: 176 aacgaatgcttggagggggaggtgttgatggag 208 |||||||||| ||||| |||||||||||||||| Sbjct: 323 aacgaatgctaggaggtggaggtgttgatggag 355
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Plus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| |||||| | | ||||| || || ||||| |||||||| ||| Sbjct: 12452604 ggcggcgaggcgttccgtctgtcggcggatgcgggcgcgggcgcgctcaagctgcagaag 12452663 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12452664 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 12452710 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Plus Query: 207 agctatacatcaagctgctgggccacaacttgtagaagcatgtcgtaaagttccagaggt 266 ||||||||||| | ||||||| || |||| ||||| ||||| ||||||||||||||||| Sbjct: 12453416 agctatacatcgaactgctggacctgaactcgtagaggcatgccgtaaagttccagaggt 12453475 Query: 267 taaacctggagtccgttgccctactggagaagctagaattactcc 311 ||| ||||||| || ||||| |||||||||||||| |||||||| Sbjct: 12453476 caaatctggagttcgctgccccactggagaagctaggattactcc 12453520 Score = 69.9 bits (35), Expect = 9e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 408 aaatagcttaaagctggctaaagagaatggcattcagtacattgcattccctgctatatc 467 ||||||||| ||||| |||||| ||||||| ||||| ||||||||||| ||||| || || Sbjct: 12453817 aaatagcttgaagctcgctaaacagaatggtattcaatacattgcattacctgcaatttc 12453876 Query: 468 ttgtggt 474 ||||||| Sbjct: 12453877 ttgtggt 12453883 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 320 agcttcccgtgtcccgtgtgatccatacagttgggcccatatatgatatggacaggaagc 379 ||||||| || ||||| ||||| || || ||||||||||||||||||||||||| | | | Sbjct: 12453631 agcttcctgtttcccgcgtgatacacactgttgggcccatatatgatatggacaagcaac 12453690 Query: 380 ctgaggtgtcattaaagaatgc 401 ||||||| || ||||| ||||| Sbjct: 12453691 ctgaggtctccttaaataatgc 12453712 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 |||||||||||||| |||||||| ||||| |||||||| ||||||| Sbjct: 12453288 aatgctgctaatgagcgaatgctaggaggtggaggtgtagatggag 12453333 Score = 42.1 bits (21), Expect = 2.1 Identities = 60/73 (82%) Strand = Plus / Plus Query: 482 gttaccctccaaaggaagcatcaaacatagctatttcagctgctcaacaattttcaggcg 541 |||| ||||||||||||||||| || || ||| |||| |||| |||| |||||| | Sbjct: 12453990 gttatcctccaaaggaagcatcgaagattgctgtttctactgcacaacgattttctaatg 12454049 Query: 542 atattaaagaggt 554 ||||||||||||| Sbjct: 12454050 atattaaagaggt 12454062
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Plus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| |||||| | | ||||| || || ||||| |||||||| ||| Sbjct: 110286 ggcggcgaggcgttccgtctgtcggcggatgcgggcgcgggcgcgctcaagctgcagaag 110345 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110346 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 110392 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Plus Query: 207 agctatacatcaagctgctgggccacaacttgtagaagcatgtcgtaaagttccagaggt 266 ||||||||||| | ||||||| || |||| ||||| ||||| ||||||||||||||||| Sbjct: 111098 agctatacatcgaactgctggacctgaactcgtagaggcatgccgtaaagttccagaggt 111157 Query: 267 taaacctggagtccgttgccctactggagaagctagaattactcc 311 ||| ||||||| || ||||| |||||||||||||| |||||||| Sbjct: 111158 caaatctggagttcgctgccccactggagaagctaggattactcc 111202 Score = 69.9 bits (35), Expect = 9e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 408 aaatagcttaaagctggctaaagagaatggcattcagtacattgcattccctgctatatc 467 ||||||||| ||||| |||||| ||||||| ||||| ||||||||||| ||||| || || Sbjct: 111499 aaatagcttgaagctcgctaaacagaatggtattcaatacattgcattacctgcaatttc 111558 Query: 468 ttgtggt 474 ||||||| Sbjct: 111559 ttgtggt 111565 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 320 agcttcccgtgtcccgtgtgatccatacagttgggcccatatatgatatggacaggaagc 379 ||||||| || ||||| ||||| || || ||||||||||||||||||||||||| | | | Sbjct: 111313 agcttcctgtttcccgcgtgatacacactgttgggcccatatatgatatggacaagcaac 111372 Query: 380 ctgaggtgtcattaaagaatgc 401 ||||||| || ||||| ||||| Sbjct: 111373 ctgaggtctccttaaataatgc 111394 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 |||||||||||||| |||||||| ||||| |||||||| ||||||| Sbjct: 110970 aatgctgctaatgagcgaatgctaggaggtggaggtgtagatggag 111015 Score = 42.1 bits (21), Expect = 2.1 Identities = 60/73 (82%) Strand = Plus / Plus Query: 482 gttaccctccaaaggaagcatcaaacatagctatttcagctgctcaacaattttcaggcg 541 |||| ||||||||||||||||| || || ||| |||| |||| |||| |||||| | Sbjct: 111672 gttatcctccaaaggaagcatcgaagattgctgtttctactgcacaacgattttctaatg 111731 Query: 542 atattaaagaggt 554 ||||||||||||| Sbjct: 111732 atattaaagaggt 111744
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| ||||||| | | ||||| || || ||||| |||||||||||| Sbjct: 28765556 ggcggcgaggcgttccggctgtcggcggatgcgggcgcgggcgcgctcaagctgcacaag 28765497 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 | ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 28765496 gacgacatcaccctctggtccgtcgacggcgccaccgtcgccatcgt 28765450 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| ||||||| | | ||||| || || ||||| |||||||||||| Sbjct: 19745797 ggcggcgaggcgttccggctgtcggcggatgcgggcgcgggcgcgctcaagctgcacaag 19745856 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 | ||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 19745857 gacgacatcacactctggtccgtcgacggcgccaccgtcgccatcgt 19745903 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 28765172 aatgctgctaatgaacgaatgctaggaggtggaggtgttgatggag 28765127 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 |||||||||||| |||||||||| ||||| |||||||||||||||| Sbjct: 19746181 aatgctgctaataaacgaatgctaggaggtggaggtgttgatggag 19746226
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Plus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| |||||| | | ||||| || || ||||| |||||||| ||| Sbjct: 12449367 ggcggcgaggcgttccgtctgtcggcggatgcgggcgcgggcgcgctcaagctgcagaag 12449426 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12449427 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 12449473 Score = 97.6 bits (49), Expect = 4e-17 Identities = 91/105 (86%) Strand = Plus / Plus Query: 207 agctatacatcaagctgctgggccacaacttgtagaagcatgtcgtaaagttccagaggt 266 ||||||||||| | ||||||| || |||| ||||| ||||| ||||||||||||||||| Sbjct: 12450179 agctatacatcgaactgctggacctgaactcgtagaggcatgccgtaaagttccagaggt 12450238 Query: 267 taaacctggagtccgttgccctactggagaagctagaattactcc 311 ||| ||||||| || ||||| |||||||||||||| |||||||| Sbjct: 12450239 caaatctggagttcgctgccccactggagaagctaggattactcc 12450283 Score = 69.9 bits (35), Expect = 9e-09 Identities = 59/67 (88%) Strand = Plus / Plus Query: 408 aaatagcttaaagctggctaaagagaatggcattcagtacattgcattccctgctatatc 467 ||||||||| ||||| |||||| ||||||| ||||| ||||||||||| ||||| || || Sbjct: 12450580 aaatagcttgaagctcgctaaacagaatggtattcaatacattgcattacctgcaatttc 12450639 Query: 468 ttgtggt 474 ||||||| Sbjct: 12450640 ttgtggt 12450646 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 320 agcttcccgtgtcccgtgtgatccatacagttgggcccatatatgatatggacaggaagc 379 ||||||| || ||||| ||||| || || ||||||||||||||||||||||||| | | | Sbjct: 12450394 agcttcctgtttcccgcgtgatacacactgttgggcccatatatgatatggacaagcaac 12450453 Query: 380 ctgaggtgtcattaaagaatgc 401 ||||||| || ||||| ||||| Sbjct: 12450454 ctgaggtctccttaaataatgc 12450475 Score = 60.0 bits (30), Expect = 9e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 |||||||||||||| |||||||| ||||| |||||||| ||||||| Sbjct: 12450051 aatgctgctaatgagcgaatgctaggaggtggaggtgtagatggag 12450096 Score = 42.1 bits (21), Expect = 2.1 Identities = 60/73 (82%) Strand = Plus / Plus Query: 482 gttaccctccaaaggaagcatcaaacatagctatttcagctgctcaacaattttcaggcg 541 |||| ||||||||||||||||| || || ||| |||| |||| |||| |||||| | Sbjct: 12450753 gttatcctccaaaggaagcatcgaagattgctgtttctactgcacaacgattttctaatg 12450812 Query: 542 atattaaagaggt 554 ||||||||||||| Sbjct: 12450813 atattaaagaggt 12450825
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| ||||||| | | ||||| || || ||||| |||||||||||| Sbjct: 73331 ggcggcgaggcgttccggctgtcggcggatgcgggcgcgggcgcgctcaagctgcacaag 73272 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 | ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 73271 gacgacatcaccctctggtccgtcgacggcgccaccgtcgccatcgt 73225 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 72947 aatgctgctaatgaacgaatgctaggaggtggaggtgttgatggag 72902
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 125 bits (63), Expect = 2e-25 Identities = 96/107 (89%) Strand = Plus / Minus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| ||||||| | | ||||| || || ||||| |||||||||||| Sbjct: 166122 ggcggcgaggcgttccggctgtcggcggatgcgggcgcgggcgcgctcaagctgcacaag 166063 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 | ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 166062 gacgacatcaccctctggtccgtcgacggcgccaccgtcgccatcgt 166016 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 165738 aatgctgctaatgaacgaatgctaggaggtggaggtgttgatggag 165693
>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0551A03 Length = 173027 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| ||||||| | | ||||| || || ||||| |||||||||||| Sbjct: 12842 ggcggcgaggcgttccggctgtcggcggatgcgggcgcgggcgcgctcaagctgcacaag 12901 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 | ||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 12902 gacgacatcacactctggtccgtcgacggcgccaccgtcgccatcgt 12948 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 |||||||||||| |||||||||| ||||| |||||||||||||||| Sbjct: 13226 aatgctgctaataaacgaatgctaggaggtggaggtgttgatggag 13271
>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B21 Length = 143722 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 55 ggcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaag 114 |||||||||||||||| ||||||| | | ||||| || || ||||| |||||||||||| Sbjct: 130253 ggcggcgaggcgttccggctgtcggcggatgcgggcgcgggcgcgctcaagctgcacaag 130312 Query: 115 ggcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 | ||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct: 130313 gacgacatcacactctggtccgtcgacggcgccaccgtcgccatcgt 130359 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 |||||||||||| |||||||||| ||||| |||||||||||||||| Sbjct: 130637 aatgctgctaataaacgaatgctaggaggtggaggtgttgatggag 130682
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 56 gcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaagg 115 ||||||||||||||| ||||||| | | ||||| || || || || ||||||||||||| Sbjct: 2197759 gcggcgaggcgttccggctgtcggcggatgcgggcgcgggcgcactcaagctgcacaagg 2197700 Query: 116 gcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 2197699 gcgacatcaccctctggtccgtcgacggcgccactgtcgccatcgt 2197654 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 2197441 aatgctgctaatgaacgaatgctaggaggtggaggtgttgatggag 2197396
>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_D01 Length = 97862 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 56 gcggcgaggcgttcccgctgtcgtctgcggcgggggccggtgcgctgaagctgcacaagg 115 ||||||||||||||| ||||||| | | ||||| || || || || ||||||||||||| Sbjct: 76021 gcggcgaggcgttccggctgtcggcggatgcgggcgcgggcgcactcaagctgcacaagg 75962 Query: 116 gcgacatcaccctctggtccgtcgacggcgccaccgacgccatcgt 161 |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 75961 gcgacatcaccctctggtccgtcgacggcgccactgtcgccatcgt 75916 Score = 75.8 bits (38), Expect = 1e-10 Identities = 44/46 (95%) Strand = Plus / Minus Query: 163 aatgctgctaatgaacgaatgcttggagggggaggtgttgatggag 208 ||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 75703 aatgctgctaatgaacgaatgctaggaggtggaggtgttgatggag 75658
>ref|NM_129622.2| Arabidopsis thaliana unknown protein AT2G40600 mRNA, complete cds Length = 916 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 271 cctggagtccgttgccctactggagaagctagaattactcc 311 |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 415 cctggagtccgttgtccaactggagaagcaagaattactcc 455 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 196 ggtgttgatggagctatacatcaagctgctgggccacaact 236 |||| ||||||||| |||||| |||||||||||||||||| Sbjct: 340 ggtgctgatggagcaatacatagagctgctgggccacaact 380 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 545 ttaaagaggtgcattttgttctgttctcgga 575 |||||||||||||||||||| ||||| |||| Sbjct: 689 ttaaagaggtgcattttgttttgttcgcgga 719 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 445 tacattgcattccctgctatatcttgtggtattt 478 ||||||||||| ||||| ||||||||||| |||| Sbjct: 589 tacattgcatttcctgccatatcttgtgggattt 622
>gb|BT000897.1| Arabidopsis thaliana clone C104910 unknown protein (At2g40600) mRNA, complete cds Length = 805 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 271 cctggagtccgttgccctactggagaagctagaattactcc 311 |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 415 cctggagtccgttgtccaactggagaagcaagaattactcc 455 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 196 ggtgttgatggagctatacatcaagctgctgggccacaact 236 |||| ||||||||| |||||| |||||||||||||||||| Sbjct: 340 ggtgctgatggagcaatacatagagctgctgggccacaact 380 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 545 ttaaagaggtgcattttgttctgttctcgga 575 |||||||||||||||||||| ||||| |||| Sbjct: 689 ttaaagaggtgcattttgttttgttcgcgga 719 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 445 tacattgcattccctgctatatcttgtggtattt 478 ||||||||||| ||||| ||||||||||| |||| Sbjct: 589 tacattgcatttcctgccatatcttgtgggattt 622
>gb|AC002336.3| Arabidopsis thaliana chromosome 2 clone T2P4 map CIC10A06, complete sequence Length = 84675 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 271 cctggagtccgttgccctactggagaagctagaattactcc 311 |||||||||||||| || ||||||||||| ||||||||||| Sbjct: 15417 cctggagtccgttgtccaactggagaagcaagaattactcc 15457 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 445 tacattgcattccctgctatatcttgtggtattt 478 ||||||||||| ||||| ||||||||||| |||| Sbjct: 15783 tacattgcatttcctgccatatcttgtgggattt 15816
>gb|AY050972.1| Arabidopsis thaliana unknown protein (At2g40600) mRNA, partial cds Length = 880 Score = 50.1 bits (25), Expect = 0.009 Identities = 34/37 (91%) Strand = Plus / Plus Query: 275 gagtccgttgccctactggagaagctagaattactcc 311 |||||||||| || ||||||||||| ||||||||||| Sbjct: 367 gagtccgttgtccaactggagaagcaagaattactcc 403 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 196 ggtgttgatggagctatacatcaagctgctgggccacaact 236 |||| ||||||||| |||||| |||||||||||||||||| Sbjct: 288 ggtgctgatggagcaatacatagagctgctgggccacaact 328 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 545 ttaaagaggtgcattttgttctgttctcgga 575 |||||||||||||||||||| ||||| |||| Sbjct: 637 ttaaagaggtgcattttgttttgttcgcgga 667 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 445 tacattgcattccctgctatatcttgtggtattt 478 ||||||||||| ||||| ||||||||||| |||| Sbjct: 537 tacattgcatttcctgccatatcttgtgggattt 570
>gb|L47610.1|PIAEMB4R Picea glauca EMB4 mRNA Length = 1142 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 443 agtacattgcattccctgctatatcttgtgg 473 |||||||||| || ||||||||||||||||| Sbjct: 456 agtacattgcttttcctgctatatcttgtgg 426
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 90 ggccggtgcgctgaagctgcac 111 |||||||||||||||||||||| Sbjct: 1244854 ggccggtgcgctgaagctgcac 1244875
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 143 gcgccaccgacgccatcgtcaa 164 |||||||||||||||||||||| Sbjct: 2865817 gcgccaccgacgccatcgtcaa 2865796
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 gccttcgcgatggcggcgtctg 46 |||||||||||||||||||||| Sbjct: 9084873 gccttcgcgatggcggcgtctg 9084852
>ref|XM_429829.1| PREDICTED: Gallus gallus LOC421259 (LOC421259), mRNA Length = 1644 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 tgtgatccatacagttgggcc 356 ||||||||||||||||||||| Sbjct: 294 tgtgatccatacagttgggcc 314
>ref|XM_749146.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g13850) partial mRNA Length = 1065 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 184 cttggagggggaggtgttgatggagctat 212 ||||||||||||||||| || |||||||| Sbjct: 196 cttggagggggaggtgtggacggagctat 224
>ref|XM_392131.2| PREDICTED: Apis mellifera similar to MGC68697 protein (LOC408589), mRNA Length = 953 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 199 gttgatggagctatacatcaagctgctgg 227 ||||||||||||||||| |||||||||| Sbjct: 442 gttgatggagctatacacaaagctgctgg 470
>ref|XM_623178.1| PREDICTED: Apis mellifera similar to MGC68697 protein (LOC408589), mRNA Length = 1111 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 199 gttgatggagctatacatcaagctgctgg 227 ||||||||||||||||| |||||||||| Sbjct: 600 gttgatggagctatacacaaagctgctgg 628
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 cgtcgacggcgccaccgacgccatc 159 ||||||||||||||||| ||||||| Sbjct: 1343775 cgtcgacggcgccaccggcgccatc 1343751
>ref|XM_363273.1| Magnaporthe grisea 70-15 predicted protein (MG01199.4) partial mRNA Length = 1008 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcctcagcgaggagagcctt 29 |||||||||||||||||||| Sbjct: 317 tcctcagcgaggagagcctt 336
>gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence Length = 162162 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 atgcttggagggggaggtgt 200 |||||||||||||||||||| Sbjct: 150798 atgcttggagggggaggtgt 150817
>gb|AC123853.2| Mus musculus BAC clone RP23-326J1 from chromosome 19, complete sequence Length = 205768 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 atgcttggagggggaggtgt 200 |||||||||||||||||||| Sbjct: 7540 atgcttggagggggaggtgt 7559
>emb|AL645767.6| Human DNA sequence from clone RP11-318C15 on chromosome 1, complete sequence Length = 33718 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 acatagctatttcagctgct 525 |||||||||||||||||||| Sbjct: 22383 acatagctatttcagctgct 22364
>emb|AL138753.8| Human DNA sequence from clone RP11-3L8 on chromosome 9 Contains the TYRP1 gene for tyrosinase-related protein 1, the 3' end of a novel gene and the 5' end of a novel gene (FLJ38505 FLJ90271), complete sequence Length = 162151 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tgcatacgaaaatagcttaa 418 |||||||||||||||||||| Sbjct: 64687 tgcatacgaaaatagcttaa 64706
>gb|AC160650.2| Pan troglodytes BAC clone CH251-548K10 from chromosome unknown, complete sequence Length = 184125 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 547 aaagaggtgcattttgttctgttc 570 ||||| |||||||||||||||||| Sbjct: 144221 aaagaagtgcattttgttctgttc 144244
>dbj|AK141626.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630047B18 product:unclassifiable, full insert sequence Length = 2270 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 atgcttggagggggaggtgt 200 |||||||||||||||||||| Sbjct: 1874 atgcttggagggggaggtgt 1855
>gb|AC155635.3| Mus musculus BAC clone RP24-252C1 from chromosome 9, complete sequence Length = 154485 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 504 aaacatagctatttcagctgctca 527 ||||||||||||||||||| |||| Sbjct: 45916 aaacatagctatttcagcttctca 45939
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 tgggccacaacttgtagaag 244 |||||||||||||||||||| Sbjct: 22055162 tgggccacaacttgtagaag 22055181
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 accgacgccatcgtcaatgc 167 |||||||||||||||||||| Sbjct: 2056426 accgacgccatcgtcaatgc 2056445
>gb|AF235504.1|AF235504 Streptomyces hygroscopicus var. ascomyceticus FK520 biosynthetic gene cluster, partial sequence Length = 77534 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 ccgtcgacggcgccaccgac 153 |||||||||||||||||||| Sbjct: 2393 ccgtcgacggcgccaccgac 2374
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 tgggccacaacttgtagaag 244 |||||||||||||||||||| Sbjct: 97226 tgggccacaacttgtagaag 97245
>emb|BX927255.9| Zebrafish DNA sequence from clone CH211-266I18 in linkage group 20, complete sequence Length = 155519 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 aaagaatgcatacgaaaata 412 |||||||||||||||||||| Sbjct: 149290 aaagaatgcatacgaaaata 149309
>emb|BX537272.5| Zebrafish DNA sequence from clone DKEY-25E12 in linkage group 20, complete sequence Length = 210184 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 aaagaatgcatacgaaaata 412 |||||||||||||||||||| Sbjct: 168640 aaagaatgcatacgaaaata 168659
>gb|AC116817.9| Mus musculus chromosome 1, clone RP24-357I7, complete sequence Length = 186439 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 agctgctcaacaattttcag 538 |||||||||||||||||||| Sbjct: 80665 agctgctcaacaattttcag 80684
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gccaccgacgccatcgtcaa 164 |||||||||||||||||||| Sbjct: 51552 gccaccgacgccatcgtcaa 51533
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gcgtctggattcggaggcgg 59 |||||||||||||||||||| Sbjct: 1818895 gcgtctggattcggaggcgg 1818876 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,770,738 Number of Sequences: 3902068 Number of extensions: 4770738 Number of successful extensions: 90521 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89845 Number of HSP's gapped (non-prelim): 668 length of query: 602 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 579 effective length of database: 17,143,297,704 effective search space: 9925969370616 effective search space used: 9925969370616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
