>FACD2_MOUSE (Q80V62) Fanconi anemia group D2 protein homolog (Protein FACD2)|
          Length = 1450

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 22/207 (10%)
 Frame = +2

Query: 2    QVSNPDMKYKRMGIVGALRIVSTIADANAAVNCSSSQQPNCE-----EALGLLNMTVNSC 166
            Q+S+   KYK +GI+GA+ +   +A+  +  + SS +  N       +   LL +  +  
Sbjct: 560  QLSSTVFKYKLIGIIGAVTMAGIMAEDRSVPSNSSQRSANVSSEQRTQVTSLLQLVHSCT 619

Query: 167  KFVTLPLILLYDELSALFESSVLHSAIIEWVVEHV-AEFDTLFLADL---EDGQLSEKYL 334
            +       L YDE + L +   L    +EWV + +  +F   F+ D     +G     + 
Sbjct: 620  EHSPWASSLYYDEFANLIQERKLAPKTLEWVGQTIFNDFQDAFVVDFCAAPEGDF--PFP 677

Query: 335  CESIEG-ELWMNLDGNISPVCVNILPLV----------STSQQRSQACLQ--ILPSQFSL 475
             +++ G E +   DG    + +N+LPL           +TSQ+ SQ  +    L S F L
Sbjct: 678  VKALYGLEEYSTQDG----IVINLLPLFYQECAKDASRATSQESSQRSMSSLCLASHFRL 733

Query: 476  LTTIERSGNEGSLGGINALLGCPLHLP 556
            L       ++G+L  I+ LL CPL LP
Sbjct: 734  LRLCVARQHDGNLDEIDGLLDCPLFLP 760

>FACD2_RAT (Q6IV68) Fanconi anemia group D2 protein homolog (Protein FACD2)|
            (FanCD2)
          Length = 1451

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
 Frame = +2

Query: 2    QVSNPDMKYKRMGIVGALRIVSTIAD-----ANAAVNCSSSQQPNCEEALGLLNMTVNSC 166
            Q+S+   KYK +GI+GA+ +   +A+     +N+    +S       +   LL +  +  
Sbjct: 562  QLSSTVFKYKLIGIIGAVTMAGIMAEDRTMPSNSTQRSASVSSEQHTQVTSLLQLVHSCT 621

Query: 167  KFVTLPLILLYDELSALFESSVLHSAIIEWVVEHVA-EFDTLFLAD---LEDGQLSEKYL 334
            +       L YDE + L +   L    +EWV + +  +F   F+ D   + +G     + 
Sbjct: 622  EHSPWASSLYYDEFANLIQERKLAPKTLEWVAQTIFNDFQDAFVVDFCAVPEGDFP--FP 679

Query: 335  CESIEGELWMNLDGNISPVCVNILPLVS----------TSQQRSQACLQ--ILPSQFSLL 478
             +++ G    N    I    +N+LPL            TSQ+ SQ  +    L S F LL
Sbjct: 680  VKALYGLEECNTQDGI---VINLLPLFFQEFAKDVSQVTSQESSQKSMSPLCLASHFRLL 736

Query: 479  TTIERSGNEGSLGGINALLGCPLHLP 556
                   + G+L  I+ALL CPL LP
Sbjct: 737  RLCVARQHNGNLDEIDALLDCPLFLP 762

>FACD2_HUMAN (Q9BXW9) Fanconi anemia group D2 protein (Protein FACD2)|
          Length = 1471

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
 Frame = +2

Query: 2    QVSNPDMKYKRMGIVGALRIVSTIADANAAVNCSSSQQPN-----CEEALGLLNMTVNSC 166
            Q+S+   KYK +GI+GA+ +   +A   +     + ++ N     C +   LL +  +  
Sbjct: 562  QLSSTVFKYKLIGIIGAVTMAGIMAADRSESPSLTQERANLSDEQCTQVTSLLQLVHSCS 621

Query: 167  KFVTLPLILLYDELSALFESSVLHSAIIEWVVEHVA-EFDTLFLAD---LEDGQLSEKYL 334
            +       L YDE + L +   L    +EWV   +  +F   F+ D   + +G     + 
Sbjct: 622  EQSPQASALYYDEFANLIQHEKLDPKALEWVGHTICNDFQDAFVVDSCVVPEGDF--PFP 679

Query: 335  CESIEG-ELWMNLDGNISPVCVNILPLV-----------STSQQRSQACLQ--ILPSQFS 472
             +++ G E +   DG    + +N+LPL+            TSQ+  Q  +    L   F 
Sbjct: 680  VKALYGLEEYDTQDG----IAINLLPLLFSQDFAKDGGPVTSQESGQKLVSPLCLAPYFR 735

Query: 473  LLTTIERSGNEGSLGGINALLGCPLHL 553
            LL       + G+L  I+ LL CP+ L
Sbjct: 736  LLRLCVERQHNGNLEEIDGLLDCPIFL 762

>LRC40_XENTR (Q5M8G4) Leucine-rich repeat-containing protein 40|
          Length = 605

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 7/177 (3%)
 Frame = +2

Query: 62  VSTIADANAAVNCSSSQQPNCEEALGLLNMTVNSCKFVTLPLILLYDELSALFESSVLH- 238
           +S + + + + NC  S   +  +  GL+   ++S K   LP      E+  +     L  
Sbjct: 173 LSILEELDVSNNCLRSISSSVGQLTGLVKFNLSSNKLTALPT-----EIGKMKNLKQLDC 227

Query: 239 -SAIIEWVVEHVAEFDTLFLADLEDGQLSE----KYLCESIEGELWMNLDGNISPVCVNI 403
            S ++E V   VA  ++L    L   +L+      +L +  E  +  N    + P  +  
Sbjct: 228 TSNLLENVPASVAGMESLEQLYLRQNKLTYLPELPFLTKLKELHVGNNQIQTLGPEHLQN 287

Query: 404 LPLVSTSQQRSQACLQILPSQFSLLTTIERSG-NEGSLGGINALLGCPLHLPSTKNL 571
           L  +S  + R    L++LP + SLL  +ER   +   LG +   LG    LP+ K+L
Sbjct: 288 LSSLSVLELRYNK-LKVLPEEISLLNGLERLDLSNNDLGSLPCTLG---SLPNLKSL 340

>HAP3_KLULA (P40914) Transcriptional activator HAP3|
          Length = 205

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = +2

Query: 299 DLEDGQLSEKYLCESIEGELWMNLDGNISPVCVNILPLVSTSQQRSQACLQILPSQFSLL 478
           + E  +    YL E  E + W+ ++ N++ +  N LP  +   + ++ C+Q   S+F   
Sbjct: 6   EAEKQERHNNYLNELAEQDRWLPIN-NVARLMKNTLPATTKVSKDAKECMQECVSEFISF 64

Query: 479 TTIE-----RSGNEGSLGGINALLGCPLHLPSTKNLDE 577
            T E      SG   ++ G + LL   LH    +N  E
Sbjct: 65  VTSEACDRCTSGKRKTINGEDILLS--LHALGFENYAE 100

>HSV2_CANAL (Q59P11) SVP1-like protein 2|
          Length = 595

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 28/88 (31%), Positives = 41/88 (46%)
 Frame = -1

Query: 309 SSRSARKRVSNSATCSTTHSIIAE*RTLLSNKADNSS*RRIKGNVTNLQELTVIFSSPRA 130
           SS SA+ +VS + T  TTH   ++ ++L    + NSS   +K N TNL      + SP +
Sbjct: 245 SSNSAQAQVSGTTT--TTHYDFSKRKSLSPTNSSNSSSTSLKENGTNL----TTYPSPSS 298

Query: 129 SSQFGC*DDEQFTAAFASAIVETILKAP 46
           ++              ASA V TI   P
Sbjct: 299 TTS-------------ASASVATITNTP 313

>LKTA_PASSP (P55123) Leukotoxin (PlLkt)|
          Length = 947

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
 Frame = +2

Query: 188 ILLYDELSALFE--SSVLHSAIIEWVVEHVAE------FDTLFLADLEDGQLSEKYLCES 343
           IL Y +  A+FE  ++ +H  I++W  +H  +      +D+ +LADL+D     + L + 
Sbjct: 396 ILQYSK-QAMFEHVANKIHDKIVDWEKKHNGKNYFENGYDSRYLADLQDNMRQLQNLNKE 454

Query: 344 IEGE--------LWMNLDGNISPV 391
           ++ E         W N  GN++ +
Sbjct: 455 LQAERVIRITQQQWDNNIGNLAGI 478

>CND3_YEAST (Q06680) Condensin complex subunit 3 (CAPG homolog)|
          Length = 1035

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 278 FDTLFLADLEDGQLSEKYLCESIEGELWMN-LDGNISPVCVNILPLVSTSQQRSQACLQI 454
           FD L    LED +LS +  C+ +    W+N LDG++    + +L  +  S  RS  C++ 
Sbjct: 276 FDQLIEWGLEDRELSVRNACKRLIAHDWLNALDGDL----IELLEKLDVS--RSSVCVKA 329

Query: 455 LPSQF 469
           + + F
Sbjct: 330 IEALF 334

>LRC40_XENLA (Q6GPJ5) Leucine-rich repeat-containing protein 40|
          Length = 605

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 7/177 (3%)
 Frame = +2

Query: 62  VSTIADANAAVNCSSSQQPNCEEALGLLNMTVNSCKFVTLPLILLYDELSALFESSVLH- 238
           +S + + + + NC  S   +  +  GL+   ++S K   LP      E+  +     L  
Sbjct: 173 LSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLTALPT-----EIGKMKNLRQLDC 227

Query: 239 -SAIIEWVVEHVAEFDTLFLADLEDGQLSE----KYLCESIEGELWMNLDGNISPVCVNI 403
            S ++E V   VA  ++L    L   +L+      +L +  E  +  N    + P  +  
Sbjct: 228 TSNLLENVPASVAGMESLEQLYLRQNKLTYLPELPFLTKLKELHVGNNQIQTLGPEHLQN 287

Query: 404 LPLVSTSQQRSQACLQILPSQFSLLTTIERSG-NEGSLGGINALLGCPLHLPSTKNL 571
           L  +S  + R    L++LP + SLL  +ER   +   +G +   LG    LP+ K+L
Sbjct: 288 LSSLSVLELRYNK-LKVLPKEISLLKGLERLDLSNNDIGSLPDTLG---SLPNLKSL 340

>CI005_HUMAN (Q9H330) Protein C9orf5 (Protein CG-2)|
          Length = 911

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
 Frame = +2

Query: 140 LLNMTVNSCKFVTLPLILLYDEL-SALFESSVLHSAIIEWVVEHVAEFDTLFLADLEDGQ 316
           +L   VN+   +   ++ L+D L  + F  +V HS   +    HV+  ++ +L D+ D Q
Sbjct: 545 ILGDKVNNTAVIEKQVLELWDRLYHSWFVKNVTHSGRHKGQKLHVSRQNS-WLGDILDWQ 603

Query: 317 LSEKYLCESIEG------ELWMNLDGNISPVCVNILPLVSTSQQRSQACLQILPSQFSLL 478
               ++ E+IE        LW+ +  N+S +   +  L++       A L  + S    L
Sbjct: 604 DIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFYSGTALLNFVLSLIIFL 663

Query: 479 TTI 487
           TT+
Sbjct: 664 TTL 666

>SYG_UREPA (Q9PPZ7) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA|
           ligase) (GlyRS)
          Length = 473

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 21/87 (24%), Positives = 43/87 (49%)
 Frame = +2

Query: 248 IEWVVEHVAEFDTLFLADLEDGQLSEKYLCESIEGELWMNLDGNISPVCVNILPLVSTSQ 427
           I  V+E     + L  A L +    EK   +  E  + MNL  +++P  + ++PLV+  +
Sbjct: 324 IPHVIEPSVGVERLLYAILTEATFIEKLAND--EDRILMNLKYDLAPYKIAVMPLVNKLK 381

Query: 428 QRSQACLQILPSQFSLLTTIERSGNEG 508
           ++++A    +    ++  T + SG+ G
Sbjct: 382 EKAEAVYNKI-LDLNISVTFDNSGSIG 407

>VBR1_PHUV (Q06927) BR1 protein|
          Length = 256

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +2

Query: 305 EDGQLSEKYLCESIEGELWMNLDGNISPVCVNILPLVSTSQQRSQACLQILPSQFSLLTT 484
           ED ++S + + E+  G  ++          +N   L  T   RS++ +++    F     
Sbjct: 47  EDVKMSSQRIHENQYGPEFVMAHNTAISTFINYPQLCKTQPNRSRSYIKLKSLHFKGTLK 106

Query: 485 IERSGNEGSLGGIN 526
           IER G+E ++ G+N
Sbjct: 107 IERVGSEVNMAGLN 120

>ALR_XANAC (Q8PGD0) Alanine racemase (EC 5.1.1.1)|
          Length = 366

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
 Frame = +2

Query: 29  KRMGIVGALRIVSTIADANAAVNCSSSQQPNC--------EEALGLLNMTVNSCKFVTLP 184
           KR+G   AL +V   A  + AV C+ + +P          EEAL L    + +      P
Sbjct: 21  KRLGGSKALAVVKADAYGHGAVRCAQALEPEADGFAVACIEEALELRQAGIRA------P 74

Query: 185 LILL-----YDELSALFESSVLHSAIIEWVVEHVAEFDT 286
           ++LL     +DEL  + E  +   A     V  +AEF +
Sbjct: 75  ILLLEGFFEHDELRLIAEHDLWTVAATPQQVRALAEFQS 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,028,618
Number of Sequences: 219361
Number of extensions: 1888175
Number of successful extensions: 5474
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5468
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)