ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags26c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_463462.1| Oryza sativa (japonica cultivar-group), predic... 40 1.2
2gb|AC133531.2| Homo sapiens BAC clone RP11-529G15 from 4, comple... 40 1.2
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.2
4dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.2
5dbj|AK072094.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.2
6dbj|AK072085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.2
7dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 38 4.8
8gb|AC009166.4| Homo sapiens chromosome 16 clone RP11-80B1, compl... 38 4.8
9gb|AC007498.7| Homo sapiens chromosome 16 clone RP11-424K7, comp... 38 4.8

>ref|XM_463462.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3249

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                       
Query: 27   ttaagccagagctatgcgaagctgtatctcttgacnatgacga 69
            |||||| ||| | ||||||||||||| | |||||| |||||||
Sbjct: 1199 ttaagcaagaaccatgcgaagctgtaacccttgacgatgacga 1241



to top

>gb|AC133531.2| Homo sapiens BAC clone RP11-529G15 from 4, complete sequence
          Length = 6483

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   aggtcaactgtcattaagcc 33
            ||||||||||||||||||||
Sbjct: 2923 aggtcaactgtcattaagcc 2904



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                           
Query: 27       ttaagccagagctatgcgaagctgtatctcttgacnatgacga 69
                |||||| ||| | ||||||||||||| | |||||| |||||||
Sbjct: 32998283 ttaagcaagaaccatgcgaagctgtaacccttgacgatgacga 32998241



to top

>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 37/43 (86%)
 Strand = Plus / Minus

                                                        
Query: 27    ttaagccagagctatgcgaagctgtatctcttgacnatgacga 69
             |||||| ||| | ||||||||||||| | |||||| |||||||
Sbjct: 64511 ttaagcaagaaccatgcgaagctgtaacccttgacgatgacga 64469



to top

>dbj|AK072094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116F16, full
            insert sequence
          Length = 4261

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                       
Query: 27   ttaagccagagctatgcgaagctgtatctcttgacnatgacga 69
            |||||| ||| | ||||||||||||| | |||||| |||||||
Sbjct: 1795 ttaagcaagaaccatgcgaagctgtaacccttgacgatgacga 1837



to top

>dbj|AK072085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119B08, full
            insert sequence
          Length = 4303

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                       
Query: 27   ttaagccagagctatgcgaagctgtatctcttgacnatgacga 69
            |||||| ||| | ||||||||||||| | |||||| |||||||
Sbjct: 1837 ttaagcaagaaccatgcgaagctgtaacccttgacgatgacga 1879



to top

>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     gtcaactgtcattaagcca 34
              |||||||||||||||||||
Sbjct: 269695 gtcaactgtcattaagcca 269677



to top

>gb|AC009166.4| Homo sapiens chromosome 16 clone RP11-80B1, complete sequence
          Length = 174550

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 81     ctgatctttgttngaaaaggag 102
              |||||||||||| |||||||||
Sbjct: 138971 ctgatctttgtttgaaaaggag 138950



to top

>gb|AC007498.7| Homo sapiens chromosome 16 clone RP11-424K7, complete sequence
          Length = 176248

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 81     ctgatctttgttngaaaaggag 102
              |||||||||||| |||||||||
Sbjct: 109641 ctgatctttgtttgaaaaggag 109620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 470,718
Number of Sequences: 3902068
Number of extensions: 470718
Number of successful extensions: 26428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26408
Number of HSP's gapped (non-prelim): 20
length of query: 106
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 85
effective length of database: 17,151,101,840
effective search space: 1457843656400
effective search space used: 1457843656400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top