ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags26c09 |
|---|---|
| Clone Library Name | barley_pub |
>NDC1_PONPY (Q5RBY5) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 674 Score = 33.1 bits (74), Expect = 0.52 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 9/43 (20%) Frame = -2 Query: 133 LTGALVLEVW-IPWVLL--------IFPVIPPVKRISEECLPQ 32 L GA +L W + W+L +FPV PP S+ECLP+ Sbjct: 275 LCGAFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPK 317
>WISP2_RAT (Q9JHC6) WNT1-inducible signaling pathway protein 2 precursor| (WISP-2) (Connective tissue growth factor-like protein) (CTGF-L) (CCN family protein COP-1) Length = 250 Score = 32.3 bits (72), Expect = 0.89 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +3 Query: 96 QGIQTSSTRAPVRRCGLRGGTTPTGSSPSWRSWTRGWVPCRTSRG 230 QG+ + R+ + L TP + W +W+ W PC T+ G Sbjct: 165 QGVTPAIQRSAAQGHQLSALVTPASADAPWPNWSTAWGPCSTTCG 209
>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22| Length = 954 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 111 SSTRAPVRRCGLRGGTTPTGSSPSWRSWTRGWVPCRTSRGNQSPT 245 S +R+PVRR G +P+ S S RS +R PCR+ ++PT Sbjct: 894 SRSRSPVRRVGYSRSRSPSVSGGSSRSPSRS--PCRSPNKGRAPT 936
>REV_HV1C4 (P05865) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 32.0 bits (71), Expect = 1.2 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +1 Query: 253 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 432 RR+H I LS +GRS E PVPL +ER + + + +GSP Sbjct: 50 RRIHSISAWLLSTCLGRSAE--------PVPLQLPPLERLTLDCSEDCGTSGTQGVGSPQ 101 Query: 433 KLI-SPSVL 456 L+ SP+VL Sbjct: 102 ILVESPAVL 110
>NDC1_HUMAN (Q9BTX1) Nucleoporin NDC1 (hNDC1) (Transmembrane protein 48)| Length = 674 Score = 31.6 bits (70), Expect = 1.5 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 9/43 (20%) Frame = -2 Query: 133 LTGALVLEVW-IPWVLL--------IFPVIPPVKRISEECLPQ 32 L G +L W + W+L +FPV PP S+ECLP+ Sbjct: 275 LCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPK 317
>FMT_HUMAN (Q96DP5) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 389 Score = 31.2 bits (69), Expect = 2.0 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Frame = +3 Query: 120 RAPVRRCG---LRGGTTPTGSSPSWRSWTR-GWVPCRTSRGNQSP 242 R VRRC L G SP WR+ R GW CR SR + P Sbjct: 2 RVLVRRCWGPPLAHGARRGRPSPQWRALARLGWEDCRDSRVREKP 46
>NDC1_RAT (Q6AXN4) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 673 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 9/43 (20%) Frame = -2 Query: 133 LTGALVLEVW-IPWVLL--------IFPVIPPVKRISEECLPQ 32 L G +L W I W+L +FPV PP S+ECLP+ Sbjct: 276 LCGVFLLMTWYISWILFKIYATEAYMFPVQPPFAEESDECLPK 318
>REV_HV1B8 (P05864) REV protein (Anti-repression transactivator protein)| (ART/TRS) (Fragment) Length = 106 Score = 30.8 bits (68), Expect = 2.6 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 253 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 432 R++H I + LS +GRS E PVPL +ER + N + +GSP Sbjct: 40 RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 91 Query: 433 KLI-SPSVL 456 L+ SP+VL Sbjct: 92 ILVESPTVL 100
>NDC1_MOUSE (Q8VCB1) Nucleoporin NDC1 (Transmembrane protein 48)| Length = 673 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 9/43 (20%) Frame = -2 Query: 133 LTGALVLEVWIP-WVLL--------IFPVIPPVKRISEECLPQ 32 L G +L W W+L +FPV PP S+ECLP+ Sbjct: 276 LCGVFLLVTWYSSWILFKIYATEAHVFPVQPPFAEASDECLPK 318
>REV_HV1BR (P04620) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 30.8 bits (68), Expect = 2.6 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 253 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 432 R++H I + LS +GRS E PVPL +ER + N + +GSP Sbjct: 50 RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101 Query: 433 KLI-SPSVL 456 L+ SP+VL Sbjct: 102 ILVESPTVL 110
>REV_HV1B1 (P04616) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 30.8 bits (68), Expect = 2.6 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 253 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 432 R++H I + LS +GRS E PVPL +ER + N + +GSP Sbjct: 50 RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101 Query: 433 KLI-SPSVL 456 L+ SP+VL Sbjct: 102 ILVESPTVL 110
>REV_HV1PV (P69719) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 253 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 432 R++H I + LS +GRS E PVPL +ER + N + +GSP Sbjct: 50 RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101 Query: 433 KLI-SPSVL 456 L+ SP++L Sbjct: 102 ILVESPTIL 110
>REV_HV1H3 (P69718) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 253 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 432 R++H I + LS +GRS E PVPL +ER + N + +GSP Sbjct: 50 RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101 Query: 433 KLI-SPSVL 456 L+ SP++L Sbjct: 102 ILVESPTIL 110
>REV_HV112 (P04325) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 253 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 432 R++H I + LS +GRS E PVPL +ER + N + +GSP Sbjct: 50 RQIHSISERILSTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101 Query: 433 KLI-SPSVL 456 L+ SP++L Sbjct: 102 ILVESPTIL 110
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 29.6 bits (65), Expect = 5.8 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Frame = +3 Query: 132 RRCGLRGGTTPTGSSPSWRSWTRGWV--PCRTSRGN------QSPTCMPTTS*HLMPATK 287 R C L G+ PT PS RSW+ G V P S + S T TS L PAT Sbjct: 364 RACSL--GSEPTAPGPSRRSWSAGPVTAPLAASTASFSAVKGASETTTKGTSTELAPATG 421 Query: 288 P 290 P Sbjct: 422 P 422
>CCA_HALSA (Q9HSP6) CCA-adding enzyme (EC 2.7.7.25) (EC 2.7.7.21) (tRNA| nucleotidyltransferase) (tRNA adenylyl-/cytidylyl- transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT) Length = 452 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 244 VGDWFPLLVLQGTHPRVQDRQLGDDPVGVVPPLNPQRLTGALV 116 + DW P +V+ P + DDP+ VV P +P+R A+V Sbjct: 200 IEDWQPPVVID---PAAHQQASFDDPLVVVDPTDPERNVAAVV 239
>YIEE_ECOLI (P0ADM8) Hypothetical protein yieE| Length = 253 Score = 29.3 bits (64), Expect = 7.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 92 NPRYPDFKHKSTGEALWVEGRNNPNWVVSQLAIL 193 +P PD S+ E+LW+ +N+PN +QL L Sbjct: 118 SPHAPDNHTFSSNESLWISKQNDPNEARAQLITL 151
>YIEE_ECOL6 (P0ADM9) Hypothetical protein yieE| Length = 253 Score = 29.3 bits (64), Expect = 7.6 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 92 NPRYPDFKHKSTGEALWVEGRNNPNWVVSQLAIL 193 +P PD S+ E+LW+ +N+PN +QL L Sbjct: 118 SPHAPDNHTFSSNESLWISKQNDPNEARAQLITL 151
>REV_HV1H2 (P04618) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 116 Score = 29.3 bits (64), Expect = 7.6 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +1 Query: 253 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 432 R++H I + L +GRS E PVPL +ER + N + +GSP Sbjct: 50 RQIHSISERILGTYLGRSAE--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 101 Query: 433 KLI-SPSVL 456 L+ SP+VL Sbjct: 102 ILVESPTVL 110
>REV_HV1LW (Q70624) REV protein (Anti-repression transactivator protein)| (ART/TRS) Length = 118 Score = 29.3 bits (64), Expect = 7.6 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = +1 Query: 253 RRLHDI*CQRLSPAIGRSQEASDPPSIYPVPLSYYHVERCAIALNSSAAFRFSLYIGSPG 432 R++H I + LS +GRS + PVPL +ER + N + +GSP Sbjct: 52 RQIHSISERILSTYLGRSAK--------PVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQ 103 Query: 433 KLI-SPSVL 456 L+ SP+VL Sbjct: 104 ILVESPTVL 112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,273,702 Number of Sequences: 219361 Number of extensions: 1768061 Number of successful extensions: 4799 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4668 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4796 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
