ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25n06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D06, full insert sequence Length = 600 Score = 192 bits (97), Expect = 8e-46 Identities = 243/294 (82%), Gaps = 9/294 (3%) Strand = Plus / Plus Query: 53 atgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccacc- 111 |||||||| ||||| |||||| |||||||||||| ||||||| ||||||||||||| Sbjct: 73 atgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccaccc 132 Query: 112 -----agcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattgggagctaaa 166 ||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||| Sbjct: 133 ccaccagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattgggagttaaa 192 Query: 167 gtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcagatgtgcca 223 ||| |||||||||||| || ||| |||||||||||||||||||||||| Sbjct: 193 tcagaggcaccatcttcttccggggagattaaaaattaccgctttagatcagatgtgcct 252 Query: 224 cccgcaccttctcataatgctgttggagggccagcttcacaacttcccaagcgcaaacca 283 || |||||||| ||| |||||||||||||||||||||| ||||| || ||||| ||| Sbjct: 253 tccccaccttcttatacggctgttggagggccagcttcactccttcctaaacgcaagcca 312 Query: 284 ctctctgaggaagagattgaagctatcatgcaaggcggtgtcttctgatattgc 337 || || |||||||| ||||| |||||||||||||| ||| ||| |||||||||| Sbjct: 313 ctgtcagaggaagaaattgaggctatcatgcaaggtggtatctactgatattgc 366
>dbj|AK073116.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020J17, full insert sequence Length = 609 Score = 192 bits (97), Expect = 8e-46 Identities = 243/294 (82%), Gaps = 9/294 (3%) Strand = Plus / Plus Query: 53 atgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccacc- 111 |||||||| ||||| |||||| |||||||||||| ||||||| ||||||||||||| Sbjct: 100 atgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccaccc 159 Query: 112 -----agcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattgggagctaaa 166 ||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||| Sbjct: 160 ccaccagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattgggagttaaa 219 Query: 167 gtagatgcaccatcttct---ggagagnnnnnnnnttaccgctttagatcagatgtgcca 223 ||| |||||||||||| || ||| |||||||||||||||||||||||| Sbjct: 220 tcagaggcaccatcttcttccggggagattaaaaattaccgctttagatcagatgtgcct 279 Query: 224 cccgcaccttctcataatgctgttggagggccagcttcacaacttcccaagcgcaaacca 283 || |||||||| ||| |||||||||||||||||||||| ||||| || ||||| ||| Sbjct: 280 tccccaccttcttatacggctgttggagggccagcttcactccttcctaaacgcaagcca 339 Query: 284 ctctctgaggaagagattgaagctatcatgcaaggcggtgtcttctgatattgc 337 || || |||||||| ||||| |||||||||||||| ||| ||| |||||||||| Sbjct: 340 ctgtcagaggaagaaattgaggctatcatgcaaggtggtatctactgatattgc 393
>gb|AY105657.1| Zea mays PCO062824 mRNA sequence Length = 817 Score = 133 bits (67), Expect = 6e-28 Identities = 196/241 (81%), Gaps = 3/241 (1%) Strand = Plus / Plus Query: 77 ttccccaagaggcatctcaaagtcccatccccaccag---cggcgcagcctgcagatcag 133 ||||||||| || |||| |||| ||||||| | |||| || |||| || ||||||||| Sbjct: 278 ttccccaagcggaatctgaaagccccatccgcgccagtgccgtcgcaacccgcagatcag 337 Query: 134 cacgcgaccctcatgtcccgattgggagctaaagtagatgcaccatcttctggagagnnn 193 |||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||| | Sbjct: 338 cacgcgaccctcatgtcccggttgggggctaaagcagaggcaccatcttctggagggatt 397 Query: 194 nnnnnttaccgctttagatcagatgtgccacccgcaccttctcataatgctgttggaggg 253 |||||||||||| ||||||||||| || |||| || |||| |||||| ||||| Sbjct: 398 aaaaattaccgctttagttcagatgtgccttccccaccgtcgcatactgctgtaggaggt 457 Query: 254 ccagcttcacaacttcccaagcgcaaaccactctctgaggaagagattgaagctatcatg 313 | |||||||| ||||| ||||| ||||| || |||| ||||||||||| ||||| ||| Sbjct: 458 caagcttcactccttcctaagcgtaaacctctgactgaagaagagattgaggctattatg 517 Query: 314 c 314 | Sbjct: 518 c 518
>gb|AY105583.1| Zea mays PCO062823 mRNA sequence Length = 567 Score = 133 bits (67), Expect = 6e-28 Identities = 219/272 (80%), Gaps = 9/272 (3%) Strand = Plus / Plus Query: 52 tatgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatcccca-- 109 ||||||||| || || ||||||| ||||||||| || ||||||||| |||||| ||| Sbjct: 150 tatgccgcggatccctctgatcaggttccccaagcggaatctcaaagccccatctccatc 209 Query: 110 ----ccagcggcg---cagcctgcagatcagcacgcgaccctcatgtcccgattgggagc 162 ||||||||| || || ||||| ||||||||||||||||||| ||| || || || Sbjct: 210 cgcgccagcggcgtcgcaacccgcagaccagcacgcgaccctcatgttccggttaggggc 269 Query: 163 taaagtagatgcaccatcttctggagagnnnnnnnnttaccgctttagatcagatgtgcc 222 ||||| ||| |||||||||||||||||| ||||||||||||||| |||||||| Sbjct: 270 taaagcagaggcaccatcttctggagagattaaaaattaccgctttagatctgatgtgcc 329 Query: 223 acccgcaccttctcataatgctgttggagggccagcttcacaacttcccaagcgcaaacc 282 | |||||||||||| ||| || ||||| |||||||||| ||||| ||||||||||| Sbjct: 330 ttgcccaccttctcatactgccgtaggaggtccagcttcactccttcctaagcgcaaacc 389 Query: 283 actctctgaggaagagattgaagctatcatgc 314 || |||| ||||||||||| ||||| |||| Sbjct: 390 cctgactgaagaagagattgaggctattatgc 421
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 199 ttaccgctttagatcagatgtgccacccgcaccttctcataatgctgttggagggccagc 258 |||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||| Sbjct: 19385168 ttaccgctttagatcagatgtgccttccccaccttcttatacggctgttggagggccagc 19385227 Query: 259 ttcacaacttcccaagcgcaaaccactctctgaggaagagattgaagctatcatg 313 ||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct: 19385228 ttcactccttcctaaacgcaagccactgtcagaggaagaaattgaggctatcatg 19385282 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 111 cagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 159 |||||||||| |||||||||||||||||| ||||| ||||||||||||| Sbjct: 19383143 cagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattggg 19383191 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 53 atgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccacc 111 |||||||| ||||| |||||| |||||||||||| ||||||| ||||||||||||| Sbjct: 19382943 atgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccacc 19383001
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 199 ttaccgctttagatcagatgtgccacccgcaccttctcataatgctgttggagggccagc 258 |||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||| Sbjct: 89941 ttaccgctttagatcagatgtgccttccccaccttcttatacggctgttggagggccagc 90000 Query: 259 ttcacaacttcccaagcgcaaaccactctctgaggaagagattgaagctatcatg 313 ||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct: 90001 ttcactccttcctaaacgcaagccactgtcagaggaagaaattgaggctatcatg 90055 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 111 cagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 159 |||||||||| |||||||||||||||||| ||||| ||||||||||||| Sbjct: 87916 cagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattggg 87964 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 53 atgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccacc 111 |||||||| ||||| |||||| |||||||||||| ||||||| ||||||||||||| Sbjct: 87716 atgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccacc 87774
>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0410C01 Length = 138424 Score = 109 bits (55), Expect = 9e-21 Identities = 100/115 (86%) Strand = Plus / Plus Query: 199 ttaccgctttagatcagatgtgccacccgcaccttctcataatgctgttggagggccagc 258 |||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||| Sbjct: 3577 ttaccgctttagatcagatgtgccttccccaccttcttatacggctgttggagggccagc 3636 Query: 259 ttcacaacttcccaagcgcaaaccactctctgaggaagagattgaagctatcatg 313 ||||| ||||| || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct: 3637 ttcactccttcctaaacgcaagccactgtcagaggaagaaattgaggctatcatg 3691 Score = 73.8 bits (37), Expect = 5e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 111 cagcggcgcagcctgcagatcagcacgcgaccctcatgtcccgattggg 159 |||||||||| |||||||||||||||||| ||||| ||||||||||||| Sbjct: 1552 cagcggcgcaacctgcagatcagcacgcgtccctcttgtcccgattggg 1600 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 53 atgccgcgcattccaatgatcagattccccaagaggcatctcaaagtcccatccccacc 111 |||||||| ||||| |||||| |||||||||||| ||||||| ||||||||||||| Sbjct: 1352 atgccgcggattccgctgatcaagttccccaagaggaatctcaagatcccatccccacc 1410
>dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT43I02, TM0210a, complete sequence Length = 55211 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 gttttgcacaagagccatgtt 422 ||||||||||||||||||||| Sbjct: 35550 gttttgcacaagagccatgtt 35530
>emb|CR318607.7| Zebrafish DNA sequence from clone CH211-237H22 in linkage group 14, complete sequence Length = 111412 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 tcgtaaccgttttgcacaag 413 |||||||||||||||||||| Sbjct: 26650 tcgtaaccgttttgcacaag 26631
>gb|AC153514.8| Mus musculus 10 BAC RP23-406O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 189633 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 tctctgaggaagagattgaa 304 |||||||||||||||||||| Sbjct: 120951 tctctgaggaagagattgaa 120970
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 agatgcaccatcttctggag 188 |||||||||||||||||||| Sbjct: 2657360 agatgcaccatcttctggag 2657341
>emb|AL138498.5|CNS01DWT Human chromosome 14 DNA sequence BAC R-168D12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158885 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ttccccaccagctgcacctt 357 |||||||||||||||||||| Sbjct: 33216 ttccccaccagctgcacctt 33235 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,537,183 Number of Sequences: 3902068 Number of extensions: 3537183 Number of successful extensions: 66167 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66118 Number of HSP's gapped (non-prelim): 49 length of query: 533 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 510 effective length of database: 17,143,297,704 effective search space: 8743081829040 effective search space used: 8743081829040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
