ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags26b23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC163351.2| Mus musculus BAC clone RP23-150D4 from chromosome... 44 0.57
2gb|AC123619.6| Mus musculus chromosome 13, clone RP23-43E21, com... 44 0.57
3emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chr... 44 0.57
4gb|AC154700.2| Mus musculus BAC clone RP24-344E15 from chromosom... 44 0.57
5emb|CR407551.12| Zebrafish DNA sequence from clone DKEYP-44H3 in... 42 2.2
6emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in l... 42 2.2
7gb|AC109600.2| Homo sapiens chromosome 16 clone RP11-7O14, compl... 42 2.2
8gb|AC023823.7| Homo sapiens chromosome 16 clone RP11-163K4, comp... 42 2.2
9gb|AC090667.9| Homo sapiens 12q BAC RP11-791L7 (Roswell Park Can... 42 2.2
10emb|AL731855.19| Mouse DNA sequence from clone RP23-107N13 on ch... 42 2.2
11dbj|AK114407.1| Ciona intestinalis cDNA, clone:cieg001f08, full ... 42 2.2
12gb|AC130547.5| Mus musculus BAC clone RP24-378G9 from 14, comple... 42 2.2
13gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome 42 2.2
14emb|AL844573.4| Mouse DNA sequence from clone RP23-277B16 on chr... 42 2.2
15gb|AC154493.2| Mus musculus BAC clone RP24-108C24 from chromosom... 40 8.9
16gb|AF201316.1| Dugesia polychroa microsatellite SpATT18 sequence 40 8.9
17gb|AY598470.1|AY598470S01 Lynx canadensis ATP synthase F0 subuni... 40 8.9
18gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, co... 40 8.9
19emb|CR354429.17| Zebrafish DNA sequence from clone CH211-150F22 ... 40 8.9
20ref|XM_946748.1| Theileria annulata strain Ankara hypothetical p... 40 8.9
21gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001... 40 8.9
22gb|DQ249178.1| Homo sapiens isolate 388CLS44 haplotype HLA-B5701... 40 8.9
23gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B1402... 40 8.9
24gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B1402... 40 8.9
25gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B0801... 40 8.9
26emb|BX247900.8| Human DNA sequence from clone DASS-357P10 on chr... 40 8.9
27emb|BX248321.5| Human DNA sequence from clone DASS-206K16 on chr... 40 8.9
28emb|AL805909.5| Human DNA sequence from clone DAQB-218D23 on chr... 40 8.9
29emb|AL663093.10| Human DNA sequence from clone XXbac-31G15 on ch... 40 8.9
30emb|AL669830.9| Human DNA sequence from clone XXbac-118E17 on ch... 40 8.9
31emb|AL592295.25| Human DNA sequence from clone RP11-122G18 on ch... 40 8.9
32emb|AL354923.12| Human DNA sequence from clone RP11-192E23 on ch... 40 8.9
33emb|CR759959.15| Zebrafish DNA sequence from clone DKEY-253H15 i... 40 8.9
34emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chr... 40 8.9
35emb|AL034352.1|SPBC725 S.pombe chromosome II cosmid c725 40 8.9
36emb|CR759772.4| Human DNA sequence from clone DAMC-192G6 on chro... 40 8.9
37emb|CR753812.3| Human DNA sequence from clone DADB-72G6 on chrom... 40 8.9
38emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chro... 40 8.9
39emb|CR759964.5| Human DNA sequence from clone DAAP-223I5 on chro... 40 8.9
40emb|BX530071.7| Zebrafish DNA sequence from clone CH211-189P14 i... 40 8.9
41gb|AE009934.1|AE009934 Pyrobaculum aerophilum strain IM2 section... 40 8.9
42emb|BX510647.10| Zebrafish DNA sequence from clone CH211-87N9 in... 40 8.9
43emb|BX323076.9| Zebrafish DNA sequence from clone DKEY-106A24 in... 40 8.9
44ref|XM_624802.1| PREDICTED: Apis mellifera similar to GA16083-PA... 40 8.9
45emb|BX324188.7| Zebrafish DNA sequence from clone DKEY-85A20 in ... 40 8.9
46gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I... 40 8.9
47gb|AC115606.2| Dictyostelium discoideum chromosome 2 map 159760-... 40 8.9
48gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complet... 40 8.9
49ref|XM_346281.2| PREDICTED: Rattus norvegicus similar to leucine... 40 8.9
50dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 8.9
51dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 40 8.9
52dbj|AB080738.1| Rotavirus A gene for outer capsid glycoprotein V... 40 8.9
53emb|CR354430.16| Zebrafish DNA sequence from clone CH211-218P2 i... 40 8.9
54emb|CR848036.8| Zebrafish DNA sequence from clone DKEY-76C17 in ... 40 8.9
55gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 8.9
56gb|AF027657.1|AF027657 Choristoneura fumiferana entomopoxvirus n... 40 8.9
57emb|BX088545.7| Zebrafish DNA sequence from clone DKEY-60G19 in ... 40 8.9
58gb|AC004197.1|AC004197 Homo sapiens clone UWGC:y28c204 from 6p21... 40 8.9
59emb|CT010483.12| Mouse DNA sequence from clone RP23-281L8 on chr... 40 8.9
60emb|CR384057.25| Zebrafish DNA sequence from clone CH211-243K10 ... 40 8.9
61gb|AC125066.5| Mus musculus BAC clone RP23-430N17 from 16, compl... 40 8.9
62emb|CR405701.20| Zebrafish DNA sequence from clone CH211-45M20 i... 40 8.9
63emb|AL731839.13| Mouse DNA sequence from clone RP23-76O22 on chr... 40 8.9
64gb|M60400.1|CBVNPHI Choristoneura biennis entomopoxvirus nucleos... 40 8.9
65dbj|AB023048.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 8.9 
>gb|AC163351.2| Mus musculus BAC clone RP23-150D4 from chromosome 13, complete
            sequence
          Length = 214062

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 268  ataaaaatctgtgctgttctaa 289
            ||||||||||||||||||||||
Sbjct: 8402 ataaaaatctgtgctgttctaa 8423
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>gb|AC123619.6| Mus musculus chromosome 13, clone RP23-43E21, complete sequence
          Length = 164264

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 268   ataaaaatctgtgctgttctaa 289
             ||||||||||||||||||||||
Sbjct: 46561 ataaaaatctgtgctgttctaa 46540
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>emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chromosome 1 Contains a
             novel gene, the 5' end of the CAMTA1 gene for calmodulin
             binding transcription activator 1, a ribosomal protein L37
             (RPL37) pseudogene and a CpG island, complete sequence
          Length = 204394

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 402   gcattctatagaacatagagtc 423
             ||||||||||||||||||||||
Sbjct: 13911 gcattctatagaacatagagtc 13932
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>gb|AC154700.2| Mus musculus BAC clone RP24-344E15 from chromosome 16, complete
             sequence
          Length = 199878

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 254   cctaaatatatgtcataaaaat 275
             ||||||||||||||||||||||
Sbjct: 85476 cctaaatatatgtcataaaaat 85455
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>emb|CR407551.12| Zebrafish DNA sequence from clone DKEYP-44H3 in linkage group 6,
             complete sequence
          Length = 95004

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 345   tataatataatattaataaca 365
             |||||||||||||||||||||
Sbjct: 58324 tataatataatattaataaca 58304
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>emb|BX469911.9| Zebrafish DNA sequence from clone DKEY-13K9 in linkage group 5, complete
              sequence
          Length = 226730

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 345    tataatataatattaataaca 365
              |||||||||||||||||||||
Sbjct: 192076 tataatataatattaataaca 192056
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>gb|AC109600.2| Homo sapiens chromosome 16 clone RP11-7O14, complete sequence
          Length = 142464

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 348    aatataatattaataacacag 368
              |||||||||||||||||||||
Sbjct: 123818 aatataatattaataacacag 123838
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>gb|AC023823.7| Homo sapiens chromosome 16 clone RP11-163K4, complete sequence
          Length = 155180

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 348   aatataatattaataacacag 368
             |||||||||||||||||||||
Sbjct: 85864 aatataatattaataacacag 85884
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>gb|AC090667.9| Homo sapiens 12q BAC RP11-791L7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 145824

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 345   tataatataatattaataaca 365
             |||||||||||||||||||||
Sbjct: 86975 tataatataatattaataaca 86995
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>emb|AL731855.19| Mouse DNA sequence from clone RP23-107N13 on chromosome 2, complete
              sequence
          Length = 172215

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 348    aatataatattaataacacag 368
              |||||||||||||||||||||
Sbjct: 101399 aatataatattaataacacag 101419
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>dbj|AK114407.1| Ciona intestinalis cDNA, clone:cieg001f08, full insert sequence
          Length = 1767

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 345  tataatataatattaataaca 365
            |||||||||||||||||||||
Sbjct: 1309 tataatataatattaataaca 1289
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>gb|AC130547.5| Mus musculus BAC clone RP24-378G9 from 14, complete sequence
          Length = 163269

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 459   tgttttagaacaggtaagtaa 479
             |||||||||||||||||||||
Sbjct: 85879 tgttttagaacaggtaagtaa 85859
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>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 181    agttttgtagaattgcaaaat 201
              |||||||||||||||||||||
Sbjct: 907595 agttttgtagaattgcaaaat 907575
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>emb|AL844573.4| Mouse DNA sequence from clone RP23-277B16 on chromosome 2, complete
             sequence
          Length = 83137

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 417   tagagtcgaaagcttgattagtttt 441
             |||||||||| ||||||||||||||
Sbjct: 61985 tagagtcgaaggcttgattagtttt 61961
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>gb|AC154493.2| Mus musculus BAC clone RP24-108C24 from chromosome 17, complete
             sequence
          Length = 165064

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   ataatataatattaataaca 365
             ||||||||||||||||||||
Sbjct: 30818 ataatataatattaataaca 30837
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>gb|AF201316.1| Dugesia polychroa microsatellite SpATT18 sequence
          Length = 600

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 346 ataatataatattaataaca 365
           ||||||||||||||||||||
Sbjct: 338 ataatataatattaataaca 357
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>gb|AY598470.1|AY598470S01 Lynx canadensis ATP synthase F0 subunit 6 (ATP6) gene, complete
           cds; mitochondrial
          Length = 681

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 147 tggatcaacaaacttactag 166
           ||||||||||||||||||||
Sbjct: 237 tggatcaacaaacttactag 256
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>gb|AC115880.11| Mus musculus chromosome 9, clone RP24-365N15, complete sequence
          Length = 202851

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    aagtaggagcctgtgctact 327
              ||||||||||||||||||||
Sbjct: 104815 aagtaggagcctgtgctact 104796
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>emb|CR354429.17| Zebrafish DNA sequence from clone CH211-150F22 in linkage group 25,
             complete sequence
          Length = 178425

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   aatataatattaataacaca 367
             ||||||||||||||||||||
Sbjct: 56388 aatataatattaataacaca 56369
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>ref|XM_946748.1| Theileria annulata strain Ankara hypothetical protein (TA15595)
           partial mRNA
          Length = 633

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 348 aatataatattaataacaca 367
           ||||||||||||||||||||
Sbjct: 355 aatataatattaataacaca 374
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>gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001/HLA-Cw0602 genomic
              sequence
          Length = 346809

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ttagaacaggtaagtaaatt 482
              ||||||||||||||||||||
Sbjct: 339300 ttagaacaggtaagtaaatt 339281
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>gb|DQ249178.1| Homo sapiens isolate 388CLS44 haplotype HLA-B570101/HLA-Cw0602 genomic
             sequence
          Length = 89624

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   ttagaacaggtaagtaaatt 482
             ||||||||||||||||||||
Sbjct: 83548 ttagaacaggtaagtaaatt 83529
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>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 363675

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ttagaacaggtaagtaaatt 482
              ||||||||||||||||||||
Sbjct: 356625 ttagaacaggtaagtaaatt 356606
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>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 336776

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ttagaacaggtaagtaaatt 482
              ||||||||||||||||||||
Sbjct: 335726 ttagaacaggtaagtaaatt 335707
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>gb|DQ249172.1| Homo sapiens isolate 135CLS49 haplotype HLA-B080101/HLA-Cw070101 genomic
              sequence
          Length = 342745

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ttagaacaggtaagtaaatt 482
              ||||||||||||||||||||
Sbjct: 333805 ttagaacaggtaagtaaatt 333786
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>emb|BX247900.8| Human DNA sequence from clone DASS-357P10 on chromosome 6, complete
           sequence
          Length = 75621

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 463 ttagaacaggtaagtaaatt 482
           ||||||||||||||||||||
Sbjct: 922 ttagaacaggtaagtaaatt 941
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>emb|BX248321.5| Human DNA sequence from clone DASS-206K16 on chromosome 6, complete
             sequence
          Length = 29117

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ttagaacaggtaagtaaatt 482
             ||||||||||||||||||||
Sbjct: 28039 ttagaacaggtaagtaaatt 28058
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>emb|AL805909.5| Human DNA sequence from clone DAQB-218D23 on chromosome 6 Contains the
             HCG22 gene for HLA complex group 22 and 1 CpG island,
             complete sequence
          Length = 85801

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ttagaacaggtaagtaaatt 482
             ||||||||||||||||||||
Sbjct: 39761 ttagaacaggtaagtaaatt 39780
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>emb|AL663093.10| Human DNA sequence from clone XXbac-31G15 on chromosome 6 contains a
             novel protein, a putative novel transcript and four CpG
             islands, complete sequence
          Length = 117327

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ttagaacaggtaagtaaatt 482
             ||||||||||||||||||||
Sbjct: 78559 ttagaacaggtaagtaaatt 78578
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>emb|AL669830.9| Human DNA sequence from clone XXbac-118E17 on chromosome 6 contains the
              GTF2H4 gene for general transcription factor IIH,
              polypeptide 4, 52kDa, the gene for KIAA1885 protein, the
              gene for a novel protein, three putative novel transcripts,
              the gene for DPCR1 protein and six CpG islands, complete
              sequence
          Length = 156272

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    ttagaacaggtaagtaaatt 482
              ||||||||||||||||||||
Sbjct: 130276 ttagaacaggtaagtaaatt 130295
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>emb|AL592295.25| Human DNA sequence from clone RP11-122G18 on chromosome 1 Contains the
             3' end of a novel gene, the MPZ gene for myelin protein
             zero (Charcot-Marie-Tooth neuropathy 1B), the SDHC gene
             for succinate dehydrogenase complex subunit C  integral
             membrane protein 15kDa, the gene for a novel protein, a
             novel gene, a pseudogene similar to part of ribonucleotide
             reductase M2 polypeptide (RRM2), a ribosomal protein S2
             (RPS2) pseudogene and two CpG islands, complete sequence
          Length = 162189

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   cttataatataatattaata 362
             ||||||||||||||||||||
Sbjct: 83865 cttataatataatattaata 83884
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>emb|AL354923.12| Human DNA sequence from clone RP11-192E23 on chromosome 9 Contains the
             3' end of the COL15A1 gene for collagen type XV and a CpG
             island, complete sequence
          Length = 134965

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   tataatataatattaataac 364
             ||||||||||||||||||||
Sbjct: 14558 tataatataatattaataac 14539
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>emb|CR759959.15| Zebrafish DNA sequence from clone DKEY-253H15 in linkage group 5,
              complete sequence
          Length = 170133

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    tcttataatataatattaat 361
              ||||||||||||||||||||
Sbjct: 147336 tcttataatataatattaat 147355
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>emb|AL645739.9| Mouse DNA sequence from clone RP23-213I10 on chromosome 11 Contains the
             Trpv3 gene for transient receptor potential cation channel
             subfamily V member 3, the Aspa gene for aspartoacylase
             (aminoacylase) 2, a novel gene, the genes for olfactory
             receptor MOR135-11, 12, 13, 2, 1, three olfactory receptor
             MOR135 pseudogenes and a CpG island, complete sequence
          Length = 208137

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    tgtttttggtatttttcata 93
             ||||||||||||||||||||
Sbjct: 64303 tgtttttggtatttttcata 64322
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>emb|AL034352.1|SPBC725 S.pombe chromosome II cosmid c725
          Length = 37949

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   ttataatataatattaataa 363
             ||||||||||||||||||||
Sbjct: 24373 ttataatataatattaataa 24392
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>emb|CR759772.4| Human DNA sequence from clone DAMC-192G6 on chromosome 6, complete
             sequence
          Length = 111150

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ttagaacaggtaagtaaatt 482
             ||||||||||||||||||||
Sbjct: 80593 ttagaacaggtaagtaaatt 80612
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>emb|CR753812.3| Human DNA sequence from clone DADB-72G6 on chromosome 6, complete
            sequence
          Length = 34493

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 463  ttagaacaggtaagtaaatt 482
            ||||||||||||||||||||
Sbjct: 6483 ttagaacaggtaagtaaatt 6502
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>emb|BX927139.8| Human DNA sequence from clone DAMA-72F24 on chromosome 6, complete
             sequence
          Length = 135396

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ttagaacaggtaagtaaatt 482
             ||||||||||||||||||||
Sbjct: 28041 ttagaacaggtaagtaaatt 28060
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>emb|CR759964.5| Human DNA sequence from clone DAAP-223I5 on chromosome 6, complete
             sequence
          Length = 82838

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   ttagaacaggtaagtaaatt 482
             ||||||||||||||||||||
Sbjct: 58480 ttagaacaggtaagtaaatt 58499
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>emb|BX530071.7| Zebrafish DNA sequence from clone CH211-189P14 in linkage group 10,
             complete sequence
          Length = 148539

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   ttataatataatattaataa 363
             ||||||||||||||||||||
Sbjct: 29607 ttataatataatattaataa 29626
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>gb|AE009934.1|AE009934 Pyrobaculum aerophilum strain IM2 section 189 of 201 of the complete
            genome
          Length = 10514

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 539  gtggcctgtataaacaacat 558
            ||||||||||||||||||||
Sbjct: 8729 gtggcctgtataaacaacat 8710
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>emb|BX510647.10| Zebrafish DNA sequence from clone CH211-87N9 in linkage group 5, complete
              sequence
          Length = 198695

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    taaatatatgtcataaaaat 275
              ||||||||||||||||||||
Sbjct: 106350 taaatatatgtcataaaaat 106369
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>emb|BX323076.9| Zebrafish DNA sequence from clone DKEY-106A24 in linkage group 10,
             complete sequence
          Length = 156467

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    aaatttagatgtttttggtatttt 88
             ||||||||||||||||| ||||||
Sbjct: 16036 aaatttagatgtttttgatatttt 16059
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>ref|XM_624802.1| PREDICTED: Apis mellifera similar to GA16083-PA (LOC552428), mRNA
          Length = 2960

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  ttataatataatattaataa 363
            ||||||||||||||||||||
Sbjct: 2766 ttataatataatattaataa 2785
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>emb|BX324188.7| Zebrafish DNA sequence from clone DKEY-85A20 in linkage group 13,
              complete sequence
          Length = 237686

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 344    ttataatataatattaataa 363
              ||||||||||||||||||||
Sbjct: 180133 ttataatataatattaataa 180114
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>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete
             sequence
          Length = 132990

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ttataatataatattaataa 363
             ||||||||||||||||||||
Sbjct: 27679 ttataatataatattaataa 27660
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>gb|AC115606.2| Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4,
           complete sequence
          Length = 49306

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 ttataatataatattaataa 363
           ||||||||||||||||||||
Sbjct: 322 ttataatataatattaataa 303
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>gb|AC108036.2| Homo sapiens BAC clone RP11-164E7 from 2, complete sequence
          Length = 151319

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   taagtaaattaaaatcaata 492
             ||||||||||||||||||||
Sbjct: 93320 taagtaaattaaaatcaata 93339
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>ref|XM_346281.2| PREDICTED: Rattus norvegicus similar to leucine-rich repeats and
            calponin homology (CH) domain containing 2 (LOC367754),
            mRNA
          Length = 4528

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  taaatatatgtcataaaaat 275
            ||||||||||||||||||||
Sbjct: 4154 taaatatatgtcataaaaat 4135
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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ttagaacaggtaagtaaatt 482
              ||||||||||||||||||||
Sbjct: 905583 ttagaacaggtaagtaaatt 905564
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>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ttagaacaggtaagtaaatt 482
              ||||||||||||||||||||
Sbjct: 479545 ttagaacaggtaagtaaatt 479526
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>dbj|AB080738.1| Rotavirus A gene for outer capsid glycoprotein VP7, complete cds
          Length = 1034

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 344 ttataatataatattaataa 363
           ||||||||||||||||||||
Sbjct: 443 ttataatataatattaataa 462
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>emb|CR354430.16| Zebrafish DNA sequence from clone CH211-218P2 in linkage group 25,
             complete sequence
          Length = 197231

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   ataatataatattaataaca 365
             ||||||||||||||||||||
Sbjct: 86276 ataatataatattaataaca 86295
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>emb|CR848036.8| Zebrafish DNA sequence from clone DKEY-76C17 in linkage group 7,
             complete sequence
          Length = 62086

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    agatgtttttggtatttttc 90
             ||||||||||||||||||||
Sbjct: 11767 agatgtttttggtatttttc 11786
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 69      ttagatgtttttggtatttt 88
               ||||||||||||||||||||
Sbjct: 1006749 ttagatgtttttggtatttt 1006768
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>gb|AF027657.1|AF027657 Choristoneura fumiferana entomopoxvirus nucleotide triphosphate
            phosphohydrolase I (NPHI) gene, complete cds
          Length = 3750

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  taatataatattaataacac 366
            ||||||||||||||||||||
Sbjct: 1599 taatataatattaataacac 1618
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>emb|BX088545.7| Zebrafish DNA sequence from clone DKEY-60G19 in linkage group 17,
             complete sequence
          Length = 156881

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ttataatataatattaataa 363
             ||||||||||||||||||||
Sbjct: 66946 ttataatataatattaataa 66927
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>gb|AC004197.1|AC004197 Homo sapiens clone UWGC:y28c204 from 6p21, complete sequence
          Length = 42969

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 463  ttagaacaggtaagtaaatt 482
            ||||||||||||||||||||
Sbjct: 8431 ttagaacaggtaagtaaatt 8412
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>emb|CT010483.12| Mouse DNA sequence from clone RP23-281L8 on chromosome 17, complete
              sequence
          Length = 189895

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    ataatataatattaataaca 365
              ||||||||||||||||||||
Sbjct: 132249 ataatataatattaataaca 132268
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>emb|CR384057.25| Zebrafish DNA sequence from clone CH211-243K10 in linkage group 17,
             complete sequence
          Length = 154493

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   ttataatataatattaataa 363
             ||||||||||||||||||||
Sbjct: 44478 ttataatataatattaataa 44497
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>gb|AC125066.5| Mus musculus BAC clone RP23-430N17 from 16, complete sequence
          Length = 197813

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   taaatatatgtcataaaaat 275
             ||||||||||||||||||||
Sbjct: 15180 taaatatatgtcataaaaat 15161
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>emb|CR405701.20| Zebrafish DNA sequence from clone CH211-45M20 in linkage group 5,
             complete sequence
          Length = 125284

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   taaatatatgtcataaaaat 275
             ||||||||||||||||||||
Sbjct: 91444 taaatatatgtcataaaaat 91425
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>emb|AL731839.13| Mouse DNA sequence from clone RP23-76O22 on chromosome X, complete
             sequence
          Length = 228355

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 550   aaacaacatgtttagttatttcaa 573
             |||||| |||||||||||||||||
Sbjct: 95561 aaacaaaatgtttagttatttcaa 95538
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>gb|M60400.1|CBVNPHI Choristoneura biennis entomopoxvirus nucleoside triphosphate
           phosphohydrolase I (NPHI) gene, complete cds
          Length = 2408

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 347 taatataatattaataacac 366
           ||||||||||||||||||||
Sbjct: 34  taatataatattaataacac 53
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>dbj|AB023048.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
             clone:53L9, complete sequence
          Length = 192650

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   ttagaacaggtaagtaaatt 482
             ||||||||||||||||||||
Sbjct: 73257 ttagaacaggtaagtaaatt 73238


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,760,855
Number of Sequences: 3902068
Number of extensions: 6760855
Number of successful extensions: 154543
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154319
Number of HSP's gapped (non-prelim): 224
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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