ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25m23 |
|---|---|
| Clone Library Name | barley_pub |
>PUS7_HUMAN (Q96PZ0) Pseudouridylate synthase 7 homolog (EC 5.4.99.-)| Length = 661 Score = 155 bits (391), Expect = 1e-37 Identities = 86/193 (44%), Positives = 119/193 (61%), Gaps = 2/193 (1%) Frame = +3 Query: 6 FRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 F GTKDKRAIT Q++ + K+ A RLA LN L K+G+F+Y K L LG+L GN FT Sbjct: 287 FSYMGTKDKRAITVQEIAVLKITAQRLAHLNKCLMNFKLGNFSYQKNPLKLGELQGNHFT 346 Query: 186 ITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSL 365 + LR+ I ++D ++ A++ L + GFINYYG+QRFG+ +VPT+ VG A+L+ W + L Sbjct: 347 VVLRN-ITGTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDL 405 Query: 366 ILDPREG-EYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKY-PGNYLQALM 539 IL PR G E + RE + + D A+R P + E +L+ L KY N + A Sbjct: 406 ILKPRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFG 465 Query: 540 AIPRTLRLMYVHS 578 IPR RLMY+HS Sbjct: 466 IIPRNNRLMYIHS 478
>YH2X_SCHPO (O74343) Hypothetical pseudouridine synthase C1A4.09 in chromosome| II (EC 5.4.99.-) Length = 680 Score = 147 bits (371), Expect = 2e-35 Identities = 85/197 (43%), Positives = 119/197 (60%), Gaps = 8/197 (4%) Frame = +3 Query: 12 IAGTKDKRAITTQQVTLFKVHASRLAALN-----NKLTGIKVGDFNYVKEGLVLGQLMGN 176 IAGTKD+R +T Q+V + V ASRLA LN N G +G+++Y L LG L GN Sbjct: 272 IAGTKDRRGVTCQRVAIHHVRASRLAQLNSGSLKNSTYGFLLGNYSYKNSNLRLGDLKGN 331 Query: 177 RFTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 F I +R+VI E V++A ++ L + GFINY+GLQRFG++SV TH +G LL+ +W+ A Sbjct: 332 EFHIVVRNVITPKEKVVEA-LNSLKEHGFINYFGLQRFGTSSVGTHTIGVRLLQSDWKGA 390 Query: 357 VSLILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGN---YL 527 V LIL PR + + + D + ++R PRR+IAE +IL+ + GN YL Sbjct: 391 VDLILSPRPEHTGSVKEAIDLWHSTHDAEASLRILPRRMIAESSILETWSR-SGNQTDYL 449 Query: 528 QALMAIPRTLRLMYVHS 578 A IPR LR +Y H+ Sbjct: 450 GAFQRIPRHLRSIYPHA 466
>YO7T_YEAST (Q08647) Hypothetical pseudouridine synthase YOR243C (EC 5.4.99.-)| Length = 676 Score = 143 bits (361), Expect = 3e-34 Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 14/204 (6%) Frame = +3 Query: 9 RIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 R AGTKD+RA+T Q+V++ K+ RL ALN L G+ +G++N+ L LG L GN F + Sbjct: 250 RYAGTKDRRAVTCQRVSISKIGLDRLNALNRTLKGMIIGNYNFSDASLNLGDLKGNEFVV 309 Query: 189 TLRSVIAES-----EDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRS 353 +R V + E+++ L ++GFINY+G+QRFG+ S+ TH +G LL W+ Sbjct: 310 VIRDVTTGNSEVSLEEIVSNGCKSLSENGFINYFGMQRFGTFSISTHTIGRELLLSNWKK 369 Query: 354 AVSLILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRL----KKYPGN 521 A LIL ++ R+ + E D +A++ PR+ +AE A+L L K+ G Sbjct: 370 AAELILSDQDNVLPKSKEARKIWAETKDAALALKQMPRQCLAENALLYSLSNQRKEEDGT 429 Query: 522 YLQ-----ALMAIPRTLRLMYVHS 578 Y + A+M IPR LR MYVH+ Sbjct: 430 YSENAYYTAIMKIPRNLRTMYVHA 453
>TRUD_METBF (Q466V2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 438 Score = 117 bits (294), Expect = 2e-26 Identities = 67/193 (34%), Positives = 111/193 (57%), Gaps = 5/193 (2%) Frame = +3 Query: 12 IAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 +AGTKDKRA+TTQ++++F + A ++ ++ K +KV ++ + LG L GN F IT Sbjct: 81 VAGTKDKRALTTQKISIFDIDAQKIEKIHLKDVELKV--LGRSRKSVELGDLWGNNFRIT 138 Query: 192 LRSVIAESEDVIK----AAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAV 359 +R++ SE++ K + L ++G N++G+QRFGS THLVG A++ G++ A Sbjct: 139 IRNITHSSEEIHKLLEKTTNEILAQNGVPNFFGIQRFGSVRPVTHLVGKAIVEGDFEKAA 198 Query: 360 SL-ILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQAL 536 L I +P E +D R+ KE D ++ +P L ERA++ L P ++ A Sbjct: 199 LLYIAEPFPDEPEDTRKARQFVKETLDFKEGLKIYPLHLGHERAMMNHLIANPDDFAGAF 258 Query: 537 MAIPRTLRLMYVH 575 + +P+ L M+VH Sbjct: 259 LVLPKNLYRMFVH 271
>TRUD_METAC (Q8TKX2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 441 Score = 114 bits (286), Expect = 2e-25 Identities = 67/194 (34%), Positives = 107/194 (55%), Gaps = 5/194 (2%) Frame = +3 Query: 12 IAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 +AGTKDKRA+TTQ++++F + A + ++ K +KV ++ + LG L GN F IT Sbjct: 84 VAGTKDKRALTTQKISIFDIDALEIEKIHLKDVELKV--LGRSRKSVELGDLWGNEFIIT 141 Query: 192 LRSVIAESED----VIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAV 359 +R + + E+ + K L + G N++G+QRFGS THLVG A++ G + A Sbjct: 142 IRDISSSPEETRTILEKTNSKVLTQGGVPNFFGVQRFGSVRSVTHLVGKAIVEGNFEKAA 201 Query: 360 SL-ILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQAL 536 L I +P E ++ R+ KE D ++ +P RL ERA++ L P +Y A Sbjct: 202 MLYIAEPFPEEPEETKAARQFVKETRDFKEGLKTYPLRLGHERAMMNHLISNPEDYSGAF 261 Query: 537 MAIPRTLRLMYVHS 578 +P+ L M+VH+ Sbjct: 262 SVLPKNLYRMFVHA 275
>TRUD_METMA (Q8Q0M2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 438 Score = 113 bits (283), Expect = 3e-25 Identities = 67/193 (34%), Positives = 110/193 (56%), Gaps = 5/193 (2%) Frame = +3 Query: 12 IAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 +AGTKDKRA+TTQ++++F AS + ++ K +KV ++ + LG L GN F IT Sbjct: 81 VAGTKDKRALTTQKISIFDTDASEIEKIHLKDIELKV--LGRSRKSVELGDLWGNDFRIT 138 Query: 192 LRSVI---AESEDVIKAAVDGLIKSGFI-NYYGLQRFGSASVPTHLVGAALLRGEWRSAV 359 +R++ E+E ++K D ++ G + N++G+QRFGS THLVG A++ G + A Sbjct: 139 VRNIENSPEETEALLKKTTDEILAQGGVPNFFGIQRFGSVRPVTHLVGKAIVEGNFEKAA 198 Query: 360 SL-ILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQAL 536 L I +P E ++ R+ K+ D ++ +P RL ERA++ L P +Y + Sbjct: 199 LLYIAEPFPEEPEETKNARQFVKDTLDFKEGLKTYPLRLGHERAMMNHLIANPEDYSGSF 258 Query: 537 MAIPRTLRLMYVH 575 +P+ L M+VH Sbjct: 259 RVLPQNLYRMFVH 271
>TRUD_METKA (Q8TXJ7) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 400 Score = 110 bits (274), Expect = 4e-24 Identities = 75/195 (38%), Positives = 102/195 (52%), Gaps = 4/195 (2%) Frame = +3 Query: 6 FRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 F IAG KDKRA+T+Q+VT+ V LA L ++ +K+ + L G L GNRF Sbjct: 82 FGIAGMKDKRAVTSQRVTVRGVPPGVLARL--RIRDLKIVPMGRARRKLRPGDLWGNRFV 139 Query: 186 ITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSL 365 IT+R V L G NYYGLQRFGS TH+VG ++ +W AV Sbjct: 140 ITVRGAKVRRLPEALRTVREL--GGVPNYYGLQRFGSRRPVTHVVGKYVVLEDWEKAVKT 197 Query: 366 ILD---PREGEYDDMNGVREHYKEH-GDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQA 533 L PRE + R KEH G+ A+R FP+ L ER IL+ L ++P +Y+ A Sbjct: 198 FLTLEYPRESP--EALEARRWLKEHWGEFKEALRRFPKFLDYERHILEHLARHPHDYINA 255 Query: 534 LMAIPRTLRLMYVHS 578 +P +R M+VH+ Sbjct: 256 FRRLPMWIRRMFVHA 270
>TRUD_METTH (O27572) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 415 Score = 108 bits (271), Expect = 8e-24 Identities = 70/197 (35%), Positives = 109/197 (55%), Gaps = 9/197 (4%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KDKRA+T Q + + S + A+ ++ +K ++ L +GQL+GNRF I + Sbjct: 74 AGMKDKRAVTRQWICVSNTAPSEVKAIEERIRNVKFLRVTANEKKLRMGQLLGNRFRILI 133 Query: 195 RSV-IAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAV-SLI 368 R I E + KA + L G NYYG QRFGS THLVG AL+ G+ + AV S I Sbjct: 134 RDTEIDEPLETAKATLQELEDKGVPNYYGWQRFGSPRANTHLVGRALVHGDVKGAVDSYI 193 Query: 369 LDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKK-------YPGNYL 527 +P EGE + ++ R Y + GD++ A P + ER +L+ + + +Y+ Sbjct: 194 GNPLEGESEIVSEARRAY-DRGDLEEAYELMPSSMRYERMMLRPMLRDLRRGEFSDESYV 252 Query: 528 QALMAIPRTLRLMYVHS 578 +A+ A+P+ L+ M+VH+ Sbjct: 253 RAIHALPKPLKRMFVHA 269
>YQ4B_CAEEL (Q17426) Hypothetical pseudouridine synthase in chromosome V (EC| 5.4.99.-) Length = 577 Score = 107 bits (266), Expect = 3e-23 Identities = 70/208 (33%), Positives = 108/208 (51%), Gaps = 16/208 (7%) Frame = +3 Query: 3 SFRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRF 182 + R G KDKRA+T+Q+V++ KVH + LN+KL GI+V Y + + +G GNRF Sbjct: 180 NIRTHGIKDKRAVTSQRVSVTKVHERTILDLNSKLRGIRVFGCEYKDDPVQMGAHWGNRF 239 Query: 183 TITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVS 362 +I LRS+ +SE ++ ++ +GFINY+G QRFGS S T +G A+++ +W AV Sbjct: 240 SIVLRSLPDDSEQLLHQRLETFQNTGFINYFGTQRFGSRSSTTAEIGLAIVKRDWEKAVK 299 Query: 363 LILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAI-----LQRLKKYPGNYL 527 +I+ N + +H +G + A + F + A +A Q GN L Sbjct: 300 MIM---------TNAMPDHL-GYGSVGYAAKCFSQTGDARKAFSKLKGAQAFATVEGNIL 349 Query: 528 QALM-----------AIPRTLRLMYVHS 578 + L AIP R +YVH+ Sbjct: 350 KCLSKGGTWQNCITEAIPIQSRSLYVHA 377
>TRUD_GEOSL (P60347) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 408 Score = 106 bits (265), Expect = 4e-23 Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 1/187 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD R IT Q V+L +V + + LN + GI++ + + L LG L GNRF + L Sbjct: 78 AGMKDARGITRQTVSLPRVTPAEVMGLN--IPGIRILSADRHRNKLRLGHLAGNRFRLRL 135 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLIL- 371 R + ++ D +A +D L + G N +G QR+G +HLVG A+L G+WR AV L++ Sbjct: 136 RETVPDAADRARAILDVLARRGVPNRFGEQRYGIQG-NSHLVGRAMLAGDWRGAVDLLMG 194 Query: 372 DPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMAIPR 551 DP + E + E Y++ GD+ ++ FP ER +LQRL K P ++ +A+ + Sbjct: 195 DPAKVEGERWRAAIEAYRQ-GDLAGSLSLFPGHCRTERDVLQRLAKRPDDFERAVHGVHP 253 Query: 552 TLRLMYV 572 L+ +Y+ Sbjct: 254 RLKKLYL 260
>TRUD_ARCFU (O28596) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 411 Score = 103 bits (257), Expect = 4e-22 Identities = 62/189 (32%), Positives = 106/189 (56%), Gaps = 1/189 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AGTKDKRA+T Q +++ V + +N K I+V Y + + LG L+GN F I + Sbjct: 77 AGTKDKRALTVQYFSIYGVKKEEIERVNLKDAKIEV--IGYARRAIQLGDLLGNFFRIRV 134 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSL-IL 371 ++ + + L++ G N++GLQRFGS TH VG +L+ + A + + Sbjct: 135 YG--CRDGEIFQETRNELMEKGTPNFFGLQRFGSIRFITHEVGKLILQNNYEEAFWVYVA 192 Query: 372 DPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMAIPR 551 P EGE +++ +RE E D + +R P+ L ER +LQ+L++ +AL+++P+ Sbjct: 193 KPFEGENEEVRKIREILWETRDAKLGLRELPKYLRYERNLLQKLREGKSEE-EALLSLPK 251 Query: 552 TLRLMYVHS 578 L++M+VH+ Sbjct: 252 NLKMMFVHA 260
>TRUD_PYRKO (Q5JDB6) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 416 Score = 102 bits (253), Expect = 1e-21 Identities = 64/191 (33%), Positives = 106/191 (55%), Gaps = 3/191 (1%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEG--LVLGQLMGNRFTI 188 AGTKD+ A+T Q +++ R+ ++ I+ + +V G + LG L+GNRF I Sbjct: 79 AGTKDRHAVTYQYISVPAEARERVEQVS-----IRDIELRFVSYGRFIKLGHLLGNRFRI 133 Query: 189 TLRSVIAESEDVIKAAVDGLI-KSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSL 365 +R V ++ D K V L K GF NY+G QRFG V H++G LL+G++ A L Sbjct: 134 IVRDVSEDAFDRTKEIVRELREKGGFPNYFGYQRFGERRVVNHIIGKLLLQGDFEGAARL 193 Query: 366 ILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMAI 545 L +G + + R+++ E GD++ A+ FP L ER +L R K GN+ +A +++ Sbjct: 194 FLGAHDGSMEG-DEARKNFWETGDVERALEEFPGFLRYERTLLHRYKD-TGNWKRAFLSL 251 Query: 546 PRTLRLMYVHS 578 P + +++H+ Sbjct: 252 PLPIMRIFIHA 262
>TRUD_GEOMG (Q39R76) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 404 Score = 96.3 bits (238), Expect = 6e-20 Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 1/187 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD R +T Q V+L ++ + AL +L GI++ + L LG L GNRF I + Sbjct: 75 AGMKDARGVTRQTVSLPRMKPEEVLAL--ELPGIRILSAERHRNKLKLGHLAGNRFRIRV 132 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLIL- 371 R V++++ +A + L + G N +G QR+G A +HL+G A+L G+W +AV L++ Sbjct: 133 RGVVSDAVARAEAILAVLERRGVPNRFGEQRYG-AQGNSHLIGRAMLAGDWCAAVDLLMG 191 Query: 372 DPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMAIPR 551 DP + + E Y + G+++ + R FP ER ++QRL K P ++ A A+ Sbjct: 192 DPAKVTGEAWRSAIEAY-QRGELEESQRLFPGHCRTERDVIQRLVKRPDDFEGAFRAVNP 250 Query: 552 TLRLMYV 572 LR +Y+ Sbjct: 251 RLRKLYL 257
>TRUD1_METJA (Q58008) Probable tRNA pseudouridine synthase D 1 (EC 5.4.99.-)| (tRNA-uridine isomerase D 1) (tRNA pseudouridylate synthase D 1) Length = 392 Score = 94.7 bits (234), Expect = 2e-19 Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 1/192 (0%) Frame = +3 Query: 6 FRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 F AG KDK A+TTQ+V F V L + K+ GI + DF + LG L GNRFT Sbjct: 85 FGFAGNKDKYAVTTQRVGCFNVKLEDLMKV--KIKGIILRDFQKTNRKIRLGDLWGNRFT 142 Query: 186 ITLRSVIAESEDVIKAAVDGLIK-SGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVS 362 I +R + ++ ++ A++ L K F+NYYG+QRFG+ TH+VG ++ +W A Sbjct: 143 IRVREPELKGKE-LEEALNKLCKLKYFLNYYGVQRFGTTRPITHIVGRFIIERDWEGAFH 201 Query: 363 LILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMA 542 D + + + + A + FP+ ER +++ + G+Y +A M Sbjct: 202 AYCGTPLPYDDKKSKLARELVDEENFKEAYKKFPKAFFYERRMIKAYIE-TGSYQKAFMI 260 Query: 543 IPRTLRLMYVHS 578 +P LR M++++ Sbjct: 261 LPPYLRCMFINA 272
>TRUD_PYRAB (Q9V107) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 406 Score = 91.7 bits (226), Expect = 1e-18 Identities = 62/190 (32%), Positives = 106/190 (55%), Gaps = 2/190 (1%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AGTKD+ A+T Q +++ + + L K+ +++ Y + L LG L+GN F I + Sbjct: 73 AGTKDRHAVTYQYISVCRDVRKEVEKL--KIRDVELKFVGYGRP-LKLGFLLGNFFLIRV 129 Query: 195 RSVIAESEDVIKAAVDGL-IKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLIL 371 R V + ++I ++ L IK GF NY+G+QRFG H+VG LL G++ A + L Sbjct: 130 RDV--KRPELIPKIIEELKIKGGFPNYFGIQRFGEKRSVNHIVGKLLLEGKYEEAAEVFL 187 Query: 372 D-PREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMAIP 548 P G D R+ + E D+D+A+ FP+ L ERA+L R ++ ++ +A + +P Sbjct: 188 GYPGNGMEGD--EARKRFLETKDVDLALEEFPKFLRYERAMLYRYRE-TRSWKKAFLVLP 244 Query: 549 RTLRLMYVHS 578 R + +++H+ Sbjct: 245 RPILRIFIHA 254
>TRUD_HALSA (Q9HSG5) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 434 Score = 91.3 bits (225), Expect = 2e-18 Identities = 69/196 (35%), Positives = 96/196 (48%), Gaps = 6/196 (3%) Frame = +3 Query: 9 RIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 R AGTKD+ A+TTQ + + A+++ + N I+V GL G L GN F I Sbjct: 87 RWAGTKDRHAVTTQLFAVRDLDAAQVPEIRN--ADIEV--VGRAGRGLEFGDLAGNAFEI 142 Query: 189 TLRSVIAESE-----DVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRS 353 +R A D + A G + G NY+G QRFGS TH VG A+LR +W + Sbjct: 143 VVRDPDAPERAAAVADELAAFGGGTV--GTPNYFGQQRFGSKRPVTHEVGLAILRDDWEA 200 Query: 354 AVSLILD-PREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQ 530 A L P E E D RE+ E D A+ FP+RL ER +L L G++ Sbjct: 201 AAMAYLGAPTEHEPADSQRAREYVAETRDWTGALAEFPQRLRYERTMLHELAD-GGSFRD 259 Query: 531 ALMAIPRTLRLMYVHS 578 A+ P L+ ++VH+ Sbjct: 260 AVETFPSNLQQLFVHA 275
>TRUD_PICTO (Q6L1R2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 414 Score = 90.9 bits (224), Expect = 2e-18 Identities = 63/194 (32%), Positives = 102/194 (52%), Gaps = 6/194 (3%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AGTKDKRA+TTQ F ++ R+ + + GI++ + + + LG L GNRF I + Sbjct: 86 AGTKDKRAVTTQY---FCINTDRM--FSGSINGIEIIEQFRSNDIIKLGDLYGNRFLIKV 140 Query: 195 R---SVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSL 365 + +S + +K + K GF N++G+QRFGS TH +G +++GE+ A Sbjct: 141 DYPGDLEKDSSETLKEINE---KGGFPNFFGVQRFGSMRSNTHYIGKMIIKGEYEKAADK 197 Query: 366 ILDPREGEYDDMNGVREH---YKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQAL 536 L YDD E+ Y ++ D +++ +P L ER+IL + GN A Sbjct: 198 YL------YDDNFDTEEYRINYGKNMDAKNSLKEYPGNLTFERSILGAIAS--GNKSSAF 249 Query: 537 MAIPRTLRLMYVHS 578 A+P+ L +M+VH+ Sbjct: 250 NALPKNLSIMFVHA 263
>TRUD_PYRFU (Q8U0N1) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 407 Score = 90.9 bits (224), Expect = 2e-18 Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 13/201 (6%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEG----LVLGQLMGNRF 182 AGTKD+ A+T Q +++ + + L +K+ D G L LG L+GN F Sbjct: 77 AGTKDRHAVTYQYISICR---------DVNLEEVKIRDIELKFVGYGRPLKLGFLLGNFF 127 Query: 183 TITLR--------SVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLR 338 I +R SVI E+++ K GF NY+G+QRFG H+VG LL Sbjct: 128 KIRVRESNPSLLPSVIEEAKE----------KGGFPNYFGIQRFGEKRSVNHVVGKLLLL 177 Query: 339 GEWRSAVSLILD-PREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYP 515 G++ A + L P +G D R + E D+D+A+R FP L ERA+L R K+ Sbjct: 178 GKYEEAAEVFLGFPGKGMEGD--EARRKFLETKDVDLALREFPNFLRYERAMLYRYKE-T 234 Query: 516 GNYLQALMAIPRTLRLMYVHS 578 G++ +A + +PR + +++HS Sbjct: 235 GSWKKAFLVLPRPILRIFIHS 255
>TRUD_PYRHO (O59207) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 409 Score = 89.0 bits (219), Expect = 9e-18 Identities = 64/192 (33%), Positives = 104/192 (54%), Gaps = 4/192 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEG--LVLGQLMGNRFTI 188 AGTKD+ A+T Q +++ R L N IK +V G L LG L+GN F I Sbjct: 78 AGTKDRHAVTYQYISI-----CREVDLEN--VAIKDVTLRFVGYGRPLKLGLLLGNFFKI 130 Query: 189 TLRSVIAES-EDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSL 365 +R E +++K A + K GF NY+G+QRFG H+VG LL G++ A + Sbjct: 131 RVRDTTPELLPNILKEAKE---KGGFPNYFGIQRFGEKRSVNHIVGKLLLLGKYEEAAEV 187 Query: 366 ILD-PREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMA 542 L P G D R+ + E ++D+A+ FP+ L ERA+L + ++ G++ ++ +A Sbjct: 188 FLGYPGNGMEGD--EARKKFLETKNVDLALEEFPKFLRYERAMLYKYRE-TGSWKRSFLA 244 Query: 543 IPRTLRLMYVHS 578 +PR + +++H+ Sbjct: 245 LPRPILRIFIHA 256
>TRUD_HALMA (Q5V1E6) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 460 Score = 84.7 bits (208), Expect = 2e-16 Identities = 70/216 (32%), Positives = 98/216 (45%), Gaps = 28/216 (12%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AGTKDKRA+TTQ ++ V A L + T I+V ++ G L GN F I + Sbjct: 89 AGTKDKRAVTTQLFSVKGVAAGDLPEIGG--TDIEV--IGRAGRPILFGDLAGNAFEIVV 144 Query: 195 R-----------------------SVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASV 305 R SV +E DG G NY+G QRFGS Sbjct: 145 RDTENTDNAASVVADLRAFANGDDSVTSEGWSSDATLPDGDTTVGVPNYFGQQRFGSRRP 204 Query: 306 PTHLVGAALLRGEWRSAV-SLILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAE 482 TH VG A+ RGEW+ AV + + +P E E + R + E D A+ P L E Sbjct: 205 VTHEVGLAIARGEWKDAVLAYVGNPNEREPESTQEARGYVDETHDWAGALDRLPGALGYE 264 Query: 483 RAILQRL----KKYPGNYLQALMAIPRTLRLMYVHS 578 R+I RL P ++ +AL A+P L+ ++V++ Sbjct: 265 RSICHRLVENGASEPADFREALEALPSNLQSLFVNA 300
>TRUD2_METMP (Q6LZL0) Probable tRNA pseudouridine synthase D 2 (EC 5.4.99.-)| (tRNA-uridine isomerase D 2) (tRNA pseudouridylate synthase D 2) Length = 390 Score = 80.5 bits (197), Expect = 3e-15 Identities = 58/192 (30%), Positives = 96/192 (50%) Frame = +3 Query: 3 SFRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRF 182 +F AGTKDK A+TTQ+ F + +L +N K I + D + L +G L GN+F Sbjct: 85 NFGFAGTKDKFAVTTQRFGCFGLKKEQLENINIK--DIVIRDVQKTNKKLRMGGLWGNKF 142 Query: 183 TITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVS 362 TI +R + +++ + + L +NYYG+QRFG TH+VG + ++ SA Sbjct: 143 TIKIRDLNLSEKEIKR--ISDLKLDYVLNYYGIQRFGLIRPITHIVGKFIYERDFESAFY 200 Query: 363 LILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMA 542 E D R+ + G+ A++ F R E+ ++Q+ KY ++ A A Sbjct: 201 TYCGTPINETGDSLEARQ-LVDMGEFKKALKLFNRGHDYEKRLIQQYLKYK-DFKMAFTA 258 Query: 543 IPRTLRLMYVHS 578 +P L M+V++ Sbjct: 259 LPPQLNSMFVNA 270
>TRUD_THEVO (Q978K9) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 409 Score = 79.3 bits (194), Expect = 7e-15 Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 5/193 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEG-----LVLGQLMGNR 179 AGTKDKRA+ Q F ++++ + + L+GIK DF ++ L LG L+ N Sbjct: 69 AGTKDKRAVKLQY---FCINSADVDVAS--LSGIK--DFEVIESFKSSHYLTLGDLIANH 121 Query: 180 FTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAV 359 F I + + E + V + K GF N++G QRFGS TH +G +++GE+ AV Sbjct: 122 FKIRFYGI--DPEMFRERYVHIISKGGFPNFFGDQRFGSRRRNTHEIGKLIIKGEYEEAV 179 Query: 360 SLILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALM 539 + E D R+H+ + D A+ FP L ER+++ + G + A Sbjct: 180 KKYI---YDEKYDKESYRKHFIDTLDYKTALERFPHSLSFERSLIGYYAR-NGTFKGAFD 235 Query: 540 AIPRTLRLMYVHS 578 ++P+ L +M+VH+ Sbjct: 236 SLPKNLTIMFVHA 248
>TRUD_NATPD (Q3IMF3) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 435 Score = 78.6 bits (192), Expect = 1e-14 Identities = 66/195 (33%), Positives = 89/195 (45%), Gaps = 7/195 (3%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AGTKDK A+TTQ LF V A + L G + ++ G L GN F + + Sbjct: 91 AGTKDKHAVTTQ---LFSVRHDDAALPD--LDGADIEPIGRAGRPVLFGDLAGNEFELVI 145 Query: 195 RSVIAESEDVIKAAV---DGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWR-SAVS 362 R AA G ++G NY+G QRFGS TH VG +L G+W +AV Sbjct: 146 RDPDRPEHAEATAAELCDFGGGEAGVPNYFGTQRFGSRRPITHRVGLDVLDGDWEAAAVR 205 Query: 363 LILDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRL---KKYPGNYLQA 533 + + E E + VRE D A P L ERAI RL + P +Y A Sbjct: 206 YVCESSEREPERTQEVREGIDADRDWAAAGERLPGSLRFERAIANRLAEGAESPDDYRAA 265 Query: 534 LMAIPRTLRLMYVHS 578 L +P L+ M+V++ Sbjct: 266 LEELPSNLQRMFVNA 280
>TRUD_THEAC (Q9HLL3) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 411 Score = 75.9 bits (185), Expect = 8e-14 Identities = 64/190 (33%), Positives = 92/190 (48%), Gaps = 2/190 (1%) Frame = +3 Query: 15 AGTKDKRAITTQQVTL-FKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AGTKDKRA Q + V S LA G ++ D L LG L N F I Sbjct: 75 AGTKDKRARKIQYFCINAPVDVSVLA-----FKGFRIIDRFRSDHYLRLGDLTANHFRIR 129 Query: 192 LRSVIAESEDVIKAAVDGLIK-SGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLI 368 + S+D I+ + +++ GF NY+G QRFGS TH VG ++ G + AV L Sbjct: 130 FQGA---SDDYIEQRYEKMMECGGFPNYFGQQRFGSRRRNTHDVGRLIVTGRYEDAVRLY 186 Query: 369 LDPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMAIP 548 L E D+ R + E D + A+ FPR L ER+I+ ++ + A A+P Sbjct: 187 L---YDERYDIEDYRREFIETLDYNRALEKFPRTLRFERSIIGYYAQH-HTFKGAFDALP 242 Query: 549 RTLRLMYVHS 578 + L +M+VH+ Sbjct: 243 KNLSIMFVHA 252
>TRUD_PYRAE (Q8ZTR2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 413 Score = 73.2 bits (178), Expect = 5e-13 Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 8/197 (4%) Frame = +3 Query: 12 IAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 + G KD +A+T+Q +++ A+ +L G++ + + + Q+ GNRFTI Sbjct: 92 VGGLKDTKAVTSQIISVRGPVANL-----PQLPGVQFLGMWSMDKPITPSQIYGNRFTII 146 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGE---WRSAVS 362 LR V E + A++ L K+ NYYG QRFG+ THL+G ALL+ + + + Sbjct: 147 LRDV--ERISCAEGALEALKKTAAPNYYGYQRFGTIRPVTHLLGKALLKKDPHLFFEVMF 204 Query: 363 LILDPREGEYDDMNGVREHYKE---HGDIDVAIRNFPRRLIAERAILQRLKKYPGNY--L 527 + RE E V + +E GD A+ FP++ + ER L+RL G Y Sbjct: 205 CKIFSRESE------VAKRAREAACKGDYAKALELFPKKFVEERVFLKRL---AGGYDMW 255 Query: 528 QALMAIPRTLRLMYVHS 578 A+MAIP + +Y+ + Sbjct: 256 NAIMAIPPQILRVYIEA 272
>TRUD_NANEQ (P60348) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 374 Score = 66.6 bits (161), Expect = 5e-11 Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 4/192 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 +G KDK+AIT Q ++++K + N +L I + D + + LG +GN F I + Sbjct: 77 SGEKDKKAITYQLISIYKGPKKSMFLDNLELYYIGLSD-----KPVKLGSHLGNYFEIKV 131 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLILD 374 + + DV F NY+ +QRFG + HL+G L++ E A ++L Sbjct: 132 YAESPKGFDV------------FPNYFDVQRFGDKRLVNHLIGKHLIKNECEEAAKILLT 179 Query: 375 PREGEYDDMNGVREHYKEHGD----IDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMA 542 E VR+ KE+ + + I P+ L E+A LQ + +Y +A A Sbjct: 180 FVGKESKKTIKVRQLIKEYWNNIEKLKKVIPLMPKALDIEKAYLQSFIE-KKDYCKAFKA 238 Query: 543 IPRTLRLMYVHS 578 IP+ + ++++HS Sbjct: 239 IPKWILMLFIHS 250
>TRUD_AQUAE (O67616) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 385 Score = 65.5 bits (158), Expect = 1e-10 Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 1/187 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLT-GIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK+A+T Q +++ ++ ++ ++ T +++ + +GL LG++ GN F + Sbjct: 61 AGLKDKKAVTEQYISVKDLNEEKIRKMDGYRTENLELKFLGFSDKGLELGEIEGNYFEVV 120 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLIL 371 +R V V + + G NY+G QRFGS + LLR E+ A+ L Sbjct: 121 VRGVTKYHRRVFPRMKELVENYGCENYFGEQRFGSVKHAEEFIVKYLLRHEYEEAMKEYL 180 Query: 372 DPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQALMAIPR 551 D R K D D + P+ E +++ L++ ++ A M +P+ Sbjct: 181 T----SLGDKRLKRLLRKAWRDWDRFLSLMPKGAKPELEVVKALRR-GESFKNAFMVLPK 235 Query: 552 TLRLMYV 572 +RLM+V Sbjct: 236 NIRLMFV 242
>TRUD_PELCD (Q3A6I8) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 398 Score = 64.3 bits (155), Expect = 2e-10 Identities = 48/166 (28%), Positives = 92/166 (55%), Gaps = 1/166 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD +A T Q +++ A + AL +L I++ + L LG L GNRFTIT+ Sbjct: 72 AGLKDAQATTRQFISVTDCSAEQALAL--QLQDIRILSARRHRNKLRLGHLAGNRFTITI 129 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEW-RSAVSLIL 371 R + +++ + + + L +G N++G QR+G+ +HL+G A+++ + ++A +I Sbjct: 130 RDIDSDALEKARDILHVLQMTGVPNFFGEQRYGALG-NSHLIGQAIVQKNFSQAAAHIIG 188 Query: 372 DPREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKK 509 DP + + + Y E+ ++ A + PRR+ ER +++ L++ Sbjct: 189 DPDKIIHPEWRQGAILYAEN-RLEEAEQALPRRMRNERNLVRSLRQ 233
>TRUD_HELPY (P55985) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 381 Score = 57.8 bits (138), Expect = 2e-08 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLA--ALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KDK A+TTQ ++L K +A L N + +K+ NY + LG L GNRF + Sbjct: 77 AGLKDKNALTTQFISLPKKYAPLLEKNTSNFQEKNLKILSLNYHHNKIKLGHLKGNRFFM 136 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 + + + K ++ + + G NY+G QRFG + H G +L+ + + A Sbjct: 137 RFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFN-DNHQEGLKILQNQTKFA 191
>TRUD_THIDN (Q30RS1) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 357 Score = 57.8 bits (138), Expect = 2e-08 Identities = 35/110 (31%), Positives = 56/110 (50%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KDK A+T Q ++L K + ++ ++ +K+ Y + +G L GN+F I L Sbjct: 72 AGLKDKHAMTKQYISLHKKYEEKMDTFEHE--DVKILSKTYHNNKIRIGHLNGNKFYIKL 129 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGE 344 + V S I A+ + G NY+G QRFG+ H+ G + +GE Sbjct: 130 KKVNPTSALKIDEALKNIASFGMPNYFGYQRFGTDG-NNHIDGELIAKGE 178
>TRUD_HELPJ (Q9ZKS5) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 381 Score = 57.4 bits (137), Expect = 3e-08 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLA--ALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KDK A+TTQ ++L K +A L N + +K+ NY + LG L GNRF + Sbjct: 77 AGLKDKNALTTQFISLPKKYAPLLEKNTSNFQERNLKILSLNYHHNKIKLGHLKGNRFFM 136 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 + + + + ++ + + G NY+G QRFG + H G +L+ E + A Sbjct: 137 RFKKMTPLNAQKTEQVLEQIAQFGMPNYFGSQRFGKFN-DNHKEGLKILQNETKFA 191
>TRUD2_METJA (Q58759) Probable tRNA pseudouridine synthase D 2 (EC 5.4.99.-)| (tRNA-uridine isomerase D 2) (tRNA pseudouridylate synthase D 2) Length = 422 Score = 56.6 bits (135), Expect = 5e-08 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 5/190 (2%) Frame = +3 Query: 18 GTKDKRAITTQQVTLFKVHAS-RLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 G KD+ A+TTQ +++ K + L N KL I F L+LG L GNRFTIT+ Sbjct: 86 GLKDRHALTTQYISIPKKYGKLSLDEPNLKLELIGESKF------LLLGDLEGNRFTITV 139 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLILD 374 R + E IK + ++ G NY+ QRFGS + +++G + AV ++L Sbjct: 140 RGLKKEDIPKIKENLK-YLEFGAPNYFDSQRFGSV-FDKKFIAKEVIKGNYEEAVKILLT 197 Query: 375 P-REGEYDDMNGVREHY-KEHGDIDVAIRNFPRRLIAERAILQRLK--KYPGNYLQALMA 542 ++ E + ++ K GD D I R + +K K +Y +AL Sbjct: 198 KYKKSEKKLIKDLKRFIDKNWGDWDKIWEYIKENNIKSRLYVNMVKELKKSNDYKKALSY 257 Query: 543 IPRTLRLMYV 572 + L+ ++V Sbjct: 258 VDDRLKKIFV 267
>TRUD_SULSO (Q980V2) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 377 Score = 55.1 bits (131), Expect = 1e-07 Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 10/180 (5%) Frame = +3 Query: 18 GTKDKRAITTQQV--------TLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMG 173 G KD AIT+Q V L + + SR L K G N+ G Sbjct: 86 GIKDANAITSQLVYIPLNEKQELIEKYQSRSFIL--KFLGFSSKKLNHT----------G 133 Query: 174 NRFTITLRSVIAESEDVIKAAVDGLIKSGFIN-YYGLQRFGSASVPTHLVGAALLRGEWR 350 N F I+L D++ ++ + K+ ++ + G QRFG+ THL+G LLR +W Sbjct: 134 NIFEISLS---ISDFDIVIERIEQIKKNPYLPAFIGYQRFGTRRPITHLIGKYLLRRDWE 190 Query: 351 SAVSLILD-PREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYL 527 A LIL P E + +R+ E GD A+R+ P + E+ +L+ ++ YL Sbjct: 191 KAFYLILTYPFLSESKETIDIRKLIME-GDFKEAVRSIPSKFKQEKLLLKNYMRFNSYYL 249
>TRUD1_METMP (Q6M1A3) Probable tRNA pseudouridine synthase D 1 (EC 5.4.99.-)| (tRNA-uridine isomerase D 1) (tRNA pseudouridylate synthase D 1) Length = 389 Score = 55.1 bits (131), Expect = 1e-07 Identities = 48/191 (25%), Positives = 91/191 (47%), Gaps = 6/191 (3%) Frame = +3 Query: 18 GTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITLR 197 G KD+ AITTQ V++ K + +N +K+ +++ L +G+L GNRF I R Sbjct: 60 GLKDRHAITTQYVSIPKEYGKLSLDEDN----LKLEYVGTIEKPLKIGRLYGNRFEIIAR 115 Query: 198 SVIAESEDVIKAAVDGL--IKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLIL 371 +V + ++ +K A D + + SG NYY QRFGS + +L+G + V ++L Sbjct: 116 AV--DKDEFLKIA-DNIRNLSSGAPNYYDDQRFGSV-FNGKFIAKEILKGNYEEVVKILL 171 Query: 372 DP-REGEYDDMNGVREHY-KEHGDIDVAIRNFPRRLIAERAILQRLKK--YPGNYLQALM 539 + E + ++ K G+ D + ++ I + +K Y ++ +A Sbjct: 172 TSYTKSEKKQLKDLKRFIAKNWGNWDECLEYIDKKQIRSKMFRNMVKSLTYENDFKKAFK 231 Query: 540 AIPRTLRLMYV 572 + L+ +++ Sbjct: 232 YVDNRLKELFI 242
>TRUD_XANAC (Q8PLR6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 369 Score = 55.1 bits (131), Expect = 1e-07 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 5/98 (5%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASR-----LAALNNKLTGIKVGDFNYVKEGLVLGQLMGNR 179 AG KD+ A+TTQ+ F VH R +AAL++ T ++V + ++ L G L GNR Sbjct: 76 AGLKDRHAVTTQR---FSVHLPRRIAPDIAALDD--TQMQVVESSWHNRKLQRGALHGNR 130 Query: 180 FTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 F +TLR V E D I+ + + G N++G QRFG Sbjct: 131 FVLTLRQVQGE-RDAIEQRLQAIAARGIPNWFGEQRFG 167
>TRUD_LEPIN (Q8F8N2) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 408 Score = 53.9 bits (128), Expect = 3e-07 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD+ A T+Q ++ K L I++ + K+ L +GNRF + L Sbjct: 72 AGKKDRHASTSQYISCQKP----LRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVL 127 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLIL- 371 R+++ + + I+ + + K+GFINYY QRF L +G+ + + LIL Sbjct: 128 RNLLEKEIESIRNNFEKITKNGFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILT 187 Query: 372 DPREGE 389 DP GE Sbjct: 188 DPFPGE 193
>TRUD_LEPIC (Q72N01) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 408 Score = 53.9 bits (128), Expect = 3e-07 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD+ A T+Q ++ K L I++ + K+ L +GNRF + L Sbjct: 72 AGKKDRHASTSQYISCQKP----LRVPKELTKVIQLDKIGFSKKSLSTELNVGNRFQLVL 127 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLIL- 371 R+++ + + I+ + + K+GFINYY QRF L +G+ + + LIL Sbjct: 128 RNLLEKEIESIRNNFEKITKNGFINYYDSQRFSRFHSEFRLPILPFFKGDAETCLKLILT 187 Query: 372 DPREGE 389 DP GE Sbjct: 188 DPFPGE 193
>TRUD_CAMJE (Q9PMK3) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 372 Score = 53.5 bits (127), Expect = 4e-07 Identities = 37/113 (32%), Positives = 58/113 (51%) Frame = +3 Query: 6 FRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 F AG KDK+ T Q +++ K S L+ ++ +K+ + + L +G L GN F Sbjct: 78 FGYAGLKDKQGSTFQYLSMPKKFESFLSNFSHPK--LKILEIFTHENKLRIGHLKGNSFF 135 Query: 186 ITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGE 344 I L+ V+ ++ A+ L K GF NY+G QRFG + G +LRG+ Sbjct: 136 IRLKKVLPSDALKLEQALMNLDKQGFANYFGYQRFGKFG-DNYKEGLEILRGK 187
>TRUD_XANCP (Q8P9Y9) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 367 Score = 53.1 bits (126), Expect = 6e-07 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 5/98 (5%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVH-----ASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNR 179 AG KD+ A+TTQ+ F VH A L+AL++ ++V + + L G L GNR Sbjct: 76 AGLKDRHAVTTQR---FSVHLPKRIAPDLSALDDD--DMQVVEHTWHNRKLQRGALHGNR 130 Query: 180 FTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 F +TLR V+ + + VI A + + G N++G QRFG Sbjct: 131 FVLTLREVVGD-QAVIDARLHAIAARGIPNWFGEQRFG 167
>TRUD_XANC8 (Q4UTP6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 367 Score = 53.1 bits (126), Expect = 6e-07 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 5/98 (5%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVH-----ASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNR 179 AG KD+ A+TTQ+ F VH A L+AL++ ++V + + L G L GNR Sbjct: 76 AGLKDRHAVTTQR---FSVHLPKRIAPDLSALDDD--DMQVVEHTWHNRKLQRGALHGNR 130 Query: 180 FTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 F +TLR V+ + + VI A + + G N++G QRFG Sbjct: 131 FVLTLREVVGD-QAVIDARLHAIAARGIPNWFGEQRFG 167
>TRUD_THET8 (Q5SI49) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 356 Score = 53.1 bits (126), Expect = 6e-07 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 3/97 (3%) Frame = +3 Query: 12 IAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 +AG KDKRA T Q ++ + + L L N L G+++ + L G L GNRF I Sbjct: 79 VAGLKDKRAKTRQWFSIPRKYEDALCLLEN-LQGVRLLAADLHTNKLRTGHLKGNRFHIL 137 Query: 192 LRSV---IAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 +R +AE+E V+K L + G NYYG QRFG Sbjct: 138 IRRPKGGVAEAEAVLKR----LAEKGVPNYYGPQRFG 170
>TRUD_THET2 (Q72IG5) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 356 Score = 53.1 bits (126), Expect = 6e-07 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 3/97 (3%) Frame = +3 Query: 12 IAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 +AG KDKRA T Q ++ + + L L N L G+++ + L G L GNRF I Sbjct: 79 VAGLKDKRAKTRQWFSIPRKYEDALCLLEN-LQGVRLLAADLHTNKLRTGHLKGNRFHIL 137 Query: 192 LRSV---IAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 +R +AE+E V+K L + G NYYG QRFG Sbjct: 138 IRRPKGGVAEAEAVLKR----LAEKGVPNYYGPQRFG 170
>TRUD_CAMJR (Q5HSX3) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 372 Score = 52.8 bits (125), Expect = 7e-07 Identities = 37/113 (32%), Positives = 58/113 (51%) Frame = +3 Query: 6 FRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 F AG KDK+ T Q +++ K S L+ ++ +K+ + + L +G L GN F Sbjct: 78 FGYAGFKDKQGSTFQYLSMPKKFESFLSNFSHPK--LKILETFIHENKLRIGHLKGNTFF 135 Query: 186 ITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGE 344 I L+ V+ ++ A+ L K GF NY+G QRFG + G +LRG+ Sbjct: 136 IRLKKVLPSDALKLEQALMNLDKQGFTNYFGYQRFGKFG-DNYKEGLEILRGK 187
>TRUD_DEIRA (Q9RSX8) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 353 Score = 52.4 bits (124), Expect = 9e-07 Identities = 39/123 (31%), Positives = 61/123 (49%) Frame = +3 Query: 12 IAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 +AG KD+ A+TTQ ++L R+ + L G+++ + + L +G L GNRF + Sbjct: 73 VAGLKDRHAVTTQWLSLPAKVEPRMGDFS--LPGVRILETSRHTNKLGMGHLHGNRFVVR 130 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVSLIL 371 +R +E + L + G NY+G QRFG + G +LRGE S + Sbjct: 131 VRGAAGMAEQAGETLAT-LAQGGVPNYFGPQRFGLGGLNAE-EGLRVLRGE-----SELR 183 Query: 372 DPR 380 DPR Sbjct: 184 DPR 186
>TRUD_SHISS (Q3YYB7) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 52.4 bits (124), Expect = 9e-07 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + L+ +L G +V ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 LR V + +DV + +D +K G NY+G QRFG +G + L+G R A Sbjct: 135 LREV-SNRDDVEQRLIDICVK-GVPNYFGAQRFG--------IGGSNLQGAQRWA 179
>TRUD_SHIFL (Q83QE3) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 52.4 bits (124), Expect = 9e-07 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + L+ +L G +V ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 LR V + +DV + +D +K G NY+G QRFG +G + L+G R A Sbjct: 135 LREV-SNRDDVEQRLIDICVK-GVPNYFGAQRFG--------IGGSNLQGALRWA 179
>TRUD_SHIDS (Q32CI5) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 52.4 bits (124), Expect = 9e-07 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + L+ +L G +V ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 LR V + +DV + +D +K G NY+G QRFG +G + L+G R A Sbjct: 135 LREV-SNRDDVEQRLIDICVK-GVPNYFGAQRFG--------IGGSNLQGALRWA 179
>TRUD_SHIBS (Q31XA7) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 52.4 bits (124), Expect = 9e-07 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + L+ +L G +V ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 LR V + +DV + +D +K G NY+G QRFG +G + L+G R A Sbjct: 135 LREV-SNRDDVEQRLIDICVK-GVPNYFGAQRFG--------IGGSNLQGALRWA 179
>TRUD_ECOLI (Q57261) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 52.4 bits (124), Expect = 9e-07 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + L+ +L G +V ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 LR V + +DV + +D +K G NY+G QRFG +G + L+G R A Sbjct: 135 LREV-SNRDDVEQRLIDICVK-GVPNYFGAQRFG--------IGGSNLQGAQRWA 179
>TRUD_ECOL6 (Q8FEJ7) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 52.4 bits (124), Expect = 9e-07 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + L+ +L G +V ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 LR V + +DV + +D +K G NY+G QRFG +G + L+G R A Sbjct: 135 LREV-SNRDDVEQRLIDICVK-GVPNYFGAQRFG--------IGGSNLQGALRWA 179
>TRUD_ECO57 (Q8X7Y6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 52.4 bits (124), Expect = 9e-07 Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 1/115 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + L+ +L G +V ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSA 356 LR V + +DV + +D +K G NY+G QRFG +G + L+G R A Sbjct: 135 LREV-SNRDDVEQRLIDICVK-GVPNYFGAQRFG--------IGGSNLQGALRWA 179
>TRUD_WOLSU (P59893) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 361 Score = 50.4 bits (119), Expect = 4e-06 Identities = 33/112 (29%), Positives = 58/112 (51%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KDK A+T Q +++ +L A ++ +K+ + + + +G L GNRF I L Sbjct: 72 AGLKDKSALTLQHLSIPAKFGDKLEAFDHP--EVKILEQVRHENKIRIGHLKGNRFFIRL 129 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWR 350 + + + I+ ++ + + G NY+G QRFG+ H +G + GE R Sbjct: 130 KKLSPLNSLKIQGVLEEIKRWGIPNYFGYQRFGNDG-NNHEIGRKIAHGEQR 180
>TRUD_XANOR (Q5GYK8) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 369 Score = 50.1 bits (118), Expect = 5e-06 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 2/95 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQ--VTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KD+ A+TTQ+ V L K A +AAL++ ++V D + L G L GN F + Sbjct: 76 AGLKDRHAVTTQRFSVHLPKRIAPDIAALDD--AQMQVIDSTWHNRKLQRGALHGNGFVL 133 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 TLR V E D ++ + + G N++G QRFG Sbjct: 134 TLRQVHGE-RDAVEERLQAIAARGIPNWFGEQRFG 167
>TRUD_XANOM (Q2P1L2) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 369 Score = 50.1 bits (118), Expect = 5e-06 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 2/95 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQ--VTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KD+ A+TTQ+ V L K A +AAL++ ++V D + L G L GN F + Sbjct: 76 AGLKDRHAVTTQRFSVHLPKRIAPDIAALDD--AQMQVIDSTWHNRKLQRGALHGNGFVL 133 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 TLR V E D ++ + + G N++G QRFG Sbjct: 134 TLRQVHGE-RDAVEERLQAIAARGIPNWFGEQRFG 167
>TRUD_SALTY (Q8ZMF8) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 49.7 bits (117), Expect = 6e-06 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + + +L G KV ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVS 362 LR I++ DV + + + G NY+G QRFG +G + L+G R A S Sbjct: 135 LRE-ISDRRDV-ETRLQAIRDGGVPNYFGAQRFG--------IGGSNLQGALRWAQS 181
>TRUD_SALTI (Q8Z473) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 49.7 bits (117), Expect = 6e-06 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + + +L G KV ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVS 362 LR I++ DV + + + G NY+G QRFG +G + L+G R A S Sbjct: 135 LRE-ISDRRDV-ETRLQAIRDGGVPNYFGAQRFG--------IGGSNLQGALRWAQS 181
>TRUD_SALPA (Q5PEG3) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 49.7 bits (117), Expect = 6e-06 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + + +L G KV ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVS 362 LR I++ DV + + + G NY+G QRFG +G + L+G R A S Sbjct: 135 LRE-ISDRRDV-ETRLQAIRDGGVPNYFGAQRFG--------IGGSNLQGALRWAQS 181
>TRUD_SALCH (Q57KJ6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 49.7 bits (117), Expect = 6e-06 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 1/117 (0%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN-KLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 AG KDK A+T Q + +V + + +L G KV ++ K L LG L GN FT+ Sbjct: 76 AGQKDKHAVTEQWLCA-RVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLV 134 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEWRSAVS 362 LR I++ DV + + + G NY+G QRFG +G + L+G R A S Sbjct: 135 LRE-ISDRRDV-ETRLQAIRDGGVPNYFGAQRFG--------IGGSNLQGALRWAQS 181
>TRUD_XANC5 (Q3BUS6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 369 Score = 49.7 bits (117), Expect = 6e-06 Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVH-----ASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNR 179 AG KD+ A+TTQ+ F VH A +AAL++ ++V + L G L GNR Sbjct: 76 AGLKDRHAVTTQR---FSVHLPKRIAPDIAALDD--AQMQVVQSAWHNRKLQRGALHGNR 130 Query: 180 FTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 F +TLR V E E I+ + + G N++G QRFG Sbjct: 131 FVLTLRQVQGERE-AIEQRLQAIAARGIPNWFGEQRFG 167
>TRUD_SULTO (Q976I1) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 363 Score = 49.3 bits (116), Expect = 8e-06 Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 8/195 (4%) Frame = +3 Query: 18 GTKDKRAITTQQVTLFKVHASRLAALNNKLT----GIKVGDFNYVKEGLVLGQLMGNRFT 185 G KD AIT Q V V N+K G FN+ GN F Sbjct: 79 GIKDTNAITEQIVYTTNVKNIIEKYENDKFLLTFLGYSNSKFNHT----------GNIFE 128 Query: 186 ITLRSVIAESEDV--IKAAVDGLIKSGFIN-YYGLQRFGSASVPTHLVGAALLRGEWRSA 356 I + E++D+ + V+ L ++ Y G QRFG+ TH++G L+ EW++A Sbjct: 129 IEI-----ETDDIKEFEKRVNKLRSIKYLPAYIGYQRFGTKRPITHIIGKMLVLREWQNA 183 Query: 357 VSLILD-PREGEYDDMNGVREHYKEHGDIDVAIRNFPRRLIAERAILQRLKKYPGNYLQA 533 + ++ P E E + + R Y + GD+ A+ FP+R ER ++ L + NY Sbjct: 184 IDFLVGYPFESESELVKKARYAYMK-GDLKEALELFPKRFRDERIAIKLLLRNE-NYFNI 241 Query: 534 LMAIPRTLRLMYVHS 578 L + +T + Y+ + Sbjct: 242 LRNL-QTPLIFYIEA 255
>TRUD_HAEIN (P44039) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 339 Score = 47.8 bits (112), Expect = 2e-05 Identities = 33/93 (35%), Positives = 44/93 (47%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD+RA+T Q L +L G+++ + G L GN F I L Sbjct: 76 AGLKDRRAVTEQWFCLQMPGMETPDFSQFELDGVEILTVTRHNRKIRTGSLEGNYFDILL 135 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R AE D +KA +D + GF NY+ QRFG Sbjct: 136 RG--AEESDELKARLDFVANFGFPNYFTEQRFG 166
>TRUD_HELHP (P59892) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 385 Score = 47.4 bits (111), Expect = 3e-05 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTG--IKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KDK A + Q +++ + +RL + L IK+ L +G L GN F + Sbjct: 82 AGLKDKAATSYQYLSIHRSLQNRLESALPHLHSQHIKILTITPHNHKLKIGHLKGNSFFM 141 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 L+ V + + + + ++ L SGF NY+G QRFG Sbjct: 142 RLKKVSSNNATKLHSTLELLAHSGFPNYFGNQRFG 176
>TRUD_LEGPL (Q5WWQ2) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 338 Score = 47.4 bits (111), Expect = 3e-05 Identities = 33/93 (35%), Positives = 50/93 (53%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KDK+A+TTQ +++ + G K+ + + L G L GN FTITL Sbjct: 75 AGLKDKQALTTQWLSIHAPGEVIEGIETLEAPGWKILECTRHNKKLRPGFLSGNHFTITL 134 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R+V ES+ + + ++ + G NY+G QRFG Sbjct: 135 RNVSDESDLIHR--IEQIKFKGVPNYFGEQRFG 165
>TRUD_HAEI8 (Q4QML9) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 339 Score = 46.2 bits (108), Expect = 7e-05 Identities = 32/93 (34%), Positives = 43/93 (46%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD+RA+T Q L +L G+++ + G L GN F I L Sbjct: 76 AGLKDRRAVTEQWFCLQMPGMETPDFSQFELDGVEILTVTRHNRKIRTGSLEGNYFDILL 135 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R AE D +K +D + GF NY+ QRFG Sbjct: 136 RG--AEESDELKVRLDFVANFGFPNYFTEQRFG 166
>TRUD_SHEON (Q8EBR4) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 370 Score = 45.8 bits (107), Expect = 9e-05 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 10/103 (9%) Frame = +3 Query: 15 AGTKDKRAITTQQVTL----------FKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQ 164 AG KDK AIT Q + ++++ RL L++ K L +G Sbjct: 73 AGQKDKNAITEQWFGIRIPGKETPAWIELNSDRLTVLSSSRHSKK----------LRIGA 122 Query: 165 LMGNRFTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 L+GNRF +TLR+V ED+I + ++ + + G NY+G QRFG Sbjct: 123 LLGNRFILTLRNV-TNVEDII-SRIEKVSQIGVPNYFGEQRFG 163
>TRUD_VIBVU (Q8DC58) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 347 Score = 45.4 bits (106), Expect = 1e-04 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Frame = +3 Query: 15 AGTKDKRAITTQ--QVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KD+ A+T Q V L K +A + I++ + L G L+GN F + Sbjct: 77 AGLKDRHAVTEQWLSVHLPKAETPDFSAFLAQYPSIEILTTARHNKKLRPGDLVGNDFVV 136 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGS 296 TL S +++ +DV+K ++ + K G NY+G QRFG+ Sbjct: 137 TL-SEVSDVDDVLKR-LETVAKLGVPNYFGNQRFGN 170
>TRUD_VIBVY (Q7MHQ6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 347 Score = 45.1 bits (105), Expect = 1e-04 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Frame = +3 Query: 15 AGTKDKRAITTQ--QVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KD+ A+T Q V L K +A + I++ + L G L+GN F + Sbjct: 77 AGLKDRHAVTEQWLSVHLPKAETPDFSAFLAQYPSIEILATARHNKKLRPGDLVGNDFVV 136 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGS 296 TL S +++ +DV+K ++ + K G NY+G QRFG+ Sbjct: 137 TL-SEVSDVDDVLKR-LETVAKLGVPNYFGNQRFGN 170
>TRUD_ERWCT (Q6D1B5) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 348 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/93 (33%), Positives = 44/93 (47%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD+ A+T Q L + +L G V + + L +G L GN F + L Sbjct: 76 AGLKDRHAVTEQWFCLHMPGKETPDFSSLELEGCDVLEVIRHRRKLRIGTLRGNHFALVL 135 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R V +E + A + + SG NY+G QRFG Sbjct: 136 RQVSDRNE--VDARLAQIAASGVPNYFGSQRFG 166
>TRUD_YERPS (Q66EC1) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 44.3 bits (103), Expect = 3e-04 Identities = 32/93 (34%), Positives = 45/93 (48%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD+ A+T Q L +L G +V + K L +G L GN FT+ L Sbjct: 75 AGLKDRHAVTEQWFCLHLPGKEAPDLATFELEGCEVLEAVRHKRKLRIGSLKGNAFTLVL 134 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R I + +DV + + + G NY+G QRFG Sbjct: 135 RH-ITDRQDV-EQRLQQIAAQGVPNYFGSQRFG 165
>TRUD_YERPE (Q8ZBP8) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 44.3 bits (103), Expect = 3e-04 Identities = 32/93 (34%), Positives = 45/93 (48%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD+ A+T Q L +L G +V + K L +G L GN FT+ L Sbjct: 75 AGLKDRHAVTEQWFCLHLPGKEAPDLATFELEGCEVLEAVRHKRKLRIGSLKGNAFTLVL 134 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R I + +DV + + + G NY+G QRFG Sbjct: 135 RH-ITDRQDV-EQRLQQIAAQGVPNYFGSQRFG 165
>TRUD_LEGPH (Q5ZV19) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 338 Score = 43.9 bits (102), Expect = 3e-04 Identities = 32/93 (34%), Positives = 49/93 (52%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KDK+A+TTQ +++ + G ++ + + L G L GN F ITL Sbjct: 75 AGLKDKQALTTQWLSVHAPGEIIDGIETLEAPGWRILECTRHNKKLKPGFLSGNHFIITL 134 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R+V ES+ V + ++ + G NY+G QRFG Sbjct: 135 RNVSDESDLVHR--IEQIKFKGVPNYFGEQRFG 165
>TRUD_LEGPA (Q5X4T2) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 338 Score = 43.5 bits (101), Expect = 4e-04 Identities = 31/93 (33%), Positives = 49/93 (52%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KDK+A+TTQ +++ + G ++ + + L G L GN F ITL Sbjct: 75 AGLKDKQALTTQWLSVHAPGEIIDGIETLEAPGWRILECTRHNKKLKPGFLSGNHFIITL 134 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R+V ES+ + + ++ + G NY+G QRFG Sbjct: 135 RNVSDESDLIHR--IEQIKFKGVPNYFGEQRFG 165
>TRUD_THICR (Q31J61) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 346 Score = 43.1 bits (100), Expect = 6e-04 Identities = 30/95 (31%), Positives = 46/95 (48%) Frame = +3 Query: 12 IAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTIT 191 +AG KD++AIT Q ++L + + G+ + L G L GNRFT+ Sbjct: 78 VAGKKDRQAITRQWMSLHLPGKQAPDIGSLDVPGVTLLKAMRHHRKLQTGGLSGNRFTLV 137 Query: 192 LRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGS 296 LR + D I+ + + G NY+G QRFG+ Sbjct: 138 LREINGNL-DQIETRLQKIAGKGVPNYFGEQRFGN 171
>TRUD_COLP3 (Q487E7) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 367 Score = 43.1 bits (100), Expect = 6e-04 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNN---KLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 AG KD+ A+T Q F +H N + G++V + + L G L GNRF Sbjct: 74 AGLKDRFAVTEQW---FGIHVPGKQEYNLDDLNIEGVEVLSYKRHNKKLRTGALTGNRFE 130 Query: 186 ITLRSVIAESEDVIKAAVDG---LIKSGFINYYGLQRFG 293 + LR V A IKA + +++ G NY+G QRFG Sbjct: 131 LILREVTA-----IKAFTERWQKIVEQGVPNYFGEQRFG 164
>TRUD_MANSM (Q65Q80) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 337 Score = 42.7 bits (99), Expect = 7e-04 Identities = 27/93 (29%), Positives = 43/93 (46%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD++A+T Q L + + G+++ + G L GN F I L Sbjct: 73 AGLKDRKAVTEQWFCLQMPGKAMPDFSRFNMAGVEILQVTRHSRKIRTGSLNGNHFEILL 132 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R+ + E +K ++ + GF NY+ QRFG Sbjct: 133 RNAVETDE--LKVRLENIKNFGFPNYFTEQRFG 163
>TRUD_PASMU (Q9CKK4) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 335 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/93 (30%), Positives = 44/93 (47%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITL 194 AG KD++A+T Q L + +L G+ + + + G L GN F I L Sbjct: 72 AGLKDRKAVTEQWFCLHMPGQPTPDFRSFQLEGVDILEVTRHHRKIRTGSLEGNHFEILL 131 Query: 195 RSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 R A+ D + ++ + + GF NY+ QRFG Sbjct: 132 RG--AKETDELNVRLNNIKQCGFPNYFTEQRFG 162
>TRUD_PHOLL (Q7N8K5) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/97 (29%), Positives = 45/97 (46%) Frame = +3 Query: 3 SFRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRF 182 S AG KD+ A+T Q L + +L G ++ K L +G L GN F Sbjct: 71 SVSYAGLKDRHAVTEQWFCLHLPGKQEPDFASFQLEGCEILTTARQKRKLRIGALKGNSF 130 Query: 183 TITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 T+ LR + +++ + + + G NY+G QRFG Sbjct: 131 TLILREI--SHHQLVENRLRLIQQGGVPNYFGEQRFG 165
>TRUD_VIBF1 (Q5E330) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 351 Score = 41.2 bits (95), Expect = 0.002 Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 2/95 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLT--GIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KD+ A+T Q +++ ++ L + T G+++ + + L G L GN+F + Sbjct: 77 AGLKDRHAVTEQWLSVQVANSDELNFAKFEATHPGVEILEVTRHNKKLRPGDLQGNQFQV 136 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 + + + + +DV+ A ++ + +G NY+G QRFG Sbjct: 137 -IATEVTDIDDVL-ARLEKVKLAGVPNYFGSQRFG 169
>TRUD_PSEU2 (Q4ZWQ1) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 352 Score = 40.0 bits (92), Expect = 0.005 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLF---KVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 AG KD++A+T Q ++ K AA ++ L +K G K L G N FT Sbjct: 77 AGLKDRQALTRQWFSIQLPGKADPDLSAAQDDTLQILKSGRH---KRKLQRGAHAANGFT 133 Query: 186 ITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 + L + A+ +D + ++ + + G NY+G QRFG Sbjct: 134 LRLTQLDAD-KDALNQRLETIARQGIPNYFGAQRFG 168
>TRUD_NITOC (Q3JCS7) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 358 Score = 38.5 bits (88), Expect = 0.014 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVL--GQLMGNRFTI 188 AG KD+ +TTQ ++ + + A L V ++ L G L GNRF + Sbjct: 80 AGLKDRHGLTTQWFSV-NLSGKKEPAWATALESATVQVLKVIRHSRKLQRGALKGNRFLL 138 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 TLR + E V+ + + +G NY+G QRFG Sbjct: 139 TLRHFQGDRE-VVCDRLTQIKVAGTPNYFGPQRFG 172
>TRUD_VIBPA (Q87LQ4) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 347 Score = 38.5 bits (88), Expect = 0.014 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Frame = +3 Query: 15 AGTKDKRAITTQ--QVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KD+ A+T Q V L K + + I++ + + L G L+GN F + Sbjct: 77 AGLKDRHAVTEQWLSVHLPKGETPDFSTFLAQYPSIEILATDRHNKKLRPGDLIGNEFVV 136 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGS 296 TL V ++ ++ ++ + + G NY+G QRFG+ Sbjct: 137 TLSEVTDMAD--VEQRLEKVKQVGVPNYFGSQRFGN 170
>TRUD_VIBCH (Q9KUJ0) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 361 Score = 38.1 bits (87), Expect = 0.018 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASR--LAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KD+ A+T Q +++ + +A + I++ + + L G L GN F + Sbjct: 77 AGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKLRPGDLQGNEFVV 136 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 TL V + + ++ + + G NY+G QRFG Sbjct: 137 TLSEV--SDVAAVLSRLETVAELGVPNYFGSQRFG 169
>TRUD_IDILO (Q5QUC5) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 350 Score = 37.7 bits (86), Expect = 0.024 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALN-NKLTGIKVGDFNYVK--EGLVLGQLMGNRFT 185 +G KD++A+T Q F + LN N+L ++ ++ + L G NRF Sbjct: 81 SGLKDRQAVTWQW---FSIQLPGKETLNWNELNDEEMSVERIIRRTKKLKTGFHRANRFV 137 Query: 186 ITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 I L +V S + ++ G+ + G INY+G QRFG Sbjct: 138 IRLANV--SSREALENLWQGVSEQGVINYFGEQRFG 171
>TRUD_METCA (Q604M0) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 354 Score = 37.0 bits (84), Expect = 0.041 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALN-NKLTGIKVGDFNYVKEGLVL--GQLMGNRFT 185 AG KD+ A+TTQ F V + A + L + + + L G L GNRF Sbjct: 82 AGLKDRHAVTTQW---FSVRLAGKADPDWRALESESIAVLRHTRHDRKLKRGALAGNRFR 138 Query: 186 ITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 I LR + D ++A + +G NY+G QRFG Sbjct: 139 IILRGLEGVC-DGLEARCAAIRAAGVPNYFGPQRFG 173
>TRUD_PSEPK (Q88MF2) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 352 Score = 36.2 bits (82), Expect = 0.070 Identities = 28/104 (26%), Positives = 47/104 (45%) Frame = +3 Query: 3 SFRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRF 182 S AG KD++A+T Q +L + + ++V + L G N F Sbjct: 73 SISYAGLKDRQALTRQWFSLHLPGKADPDLSRAEDASLRVLKQVRHQRKLQRGAHSANGF 132 Query: 183 TITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTH 314 T+ L ++ A+ + + A ++ L + G NY+G QRFG H Sbjct: 133 TLRLTALAADHQ-AVDARLEQLRQQGVPNYFGTQRFGHGGGNVH 175
>TRUD_PSE14 (Q48F86) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 352 Score = 36.2 bits (82), Expect = 0.070 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLF---KVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 AG KD++A+T Q ++ K AA ++ L +K K L G N FT Sbjct: 77 AGLKDRQALTRQWFSIQLPGKADPDLSAAQDDTLQILKSTRH---KRKLQRGAHAANGFT 133 Query: 186 ITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 + L + A++ D + ++ + + G NY+G QRFG Sbjct: 134 LRLTQLDADT-DALNQRLEIIARQGIPNYFGTQRFG 168
>TRUD_PSESM (Q886L6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 352 Score = 35.8 bits (81), Expect = 0.091 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 3/96 (3%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLF---KVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 AG KD++A+T Q ++ K AA + L +K G K L G N FT Sbjct: 77 AGLKDRQALTRQWFSIQLPGKADPDLSAAQDATLQILKSGRH---KRKLQRGAHAANGFT 133 Query: 186 ITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 + L + + E + ++ + G NY+G+QRFG Sbjct: 134 LRLTQLEGDKE-ALNQRLETIALQGIPNYFGVQRFG 168
>TRUD_PSEF5 (Q4KHE9) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 352 Score = 35.4 bits (80), Expect = 0.12 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 7/100 (7%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLF---KVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 AG KD++A+T Q ++ K AA N+ L K+ + K L G N FT Sbjct: 77 AGLKDRQALTRQWFSVQLPGKADPDLGAAENHTL---KILEATRHKRKLQRGAHAANGFT 133 Query: 186 ITLRSVIAESEDVIKAAVDGLIK----SGFINYYGLQRFG 293 + L + A+ +AA+D +K G NY+G QRFG Sbjct: 134 LRLTELKAD-----QAAIDERLKRIAAQGIPNYFGAQRFG 168
>TRUD_PSEPF (Q3KH85) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 352 Score = 35.0 bits (79), Expect = 0.16 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 7/100 (7%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLF---KVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFT 185 AG KD++A+T Q ++ K AA N+ L +K K L G N FT Sbjct: 77 AGLKDRQALTRQWFSVQLPGKADPDLSAAENDTLKILKTTRH---KRKLQRGAHSANGFT 133 Query: 186 ITLRSVIAESEDVIKAAVDG----LIKSGFINYYGLQRFG 293 + L + KAA+D + K G NY+G QRFG Sbjct: 134 LRLTQFNGD-----KAAIDERLQLIAKQGIPNYFGAQRFG 168
>TRUD_PSEHT (Q3IDQ4) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 349 Score = 35.0 bits (79), Expect = 0.16 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 171 GNRFTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 GN+FTITLR+V + + + ++SG NY+G QRFG Sbjct: 125 GNKFTITLRNVTDPLDILCRI---NAVRSGVPNYFGEQRFG 162
>TRUD_PHOPR (Q6LMT5) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 352 Score = 34.7 bits (78), Expect = 0.20 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASR--LAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTI 188 AG KD+ A+T Q +++ + L + GI+V + + L G L+GN F I Sbjct: 77 AGLKDRHAVTEQWISVHLPGKADPDLTDFVAEHPGIEVLETTRHDKKLRPGDLVGNWFQI 136 Query: 189 TLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 L + E +K ++ + G NY+G QRFG Sbjct: 137 RLLDLTNPEELALK--LEQVKMHGVPNYFGQQRFG 169
>TRUD_PSEAE (Q9HY04) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 355 Score = 33.9 bits (76), Expect = 0.35 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 5/98 (5%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVK-----EGLVLGQLMGNR 179 AG KD++A+T Q F +H A + L + D ++ L G N Sbjct: 80 AGLKDRQALTRQW---FSLHLPGKA--DPDLGAAEGADLRILRCTRHSRKLQRGAHAANG 134 Query: 180 FTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFG 293 FT+ L + AE + A ++ + G NY+GLQRFG Sbjct: 135 FTLRLTGLRAERAP-LDARLERIAADGVPNYFGLQRFG 171
>GON4L_RAT (Q535K8) GON-4-like protein (Protein GON4) (GON-4 homolog)| Length = 2256 Score = 31.2 bits (69), Expect = 2.2 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Frame = -3 Query: 385 PSLGSRIKLTALLHSPLSKAAPTR*VGTEALPKRCRP**LINP---LFINPSTAALITSS 215 PSLG + P + PTR G +A P +P +I+P +F P+T + S Sbjct: 1113 PSLGP-----SKFRKPYVRRKPTRRKGAKASPC-VKPAPIIHPTPVIFTVPATTVKVVSL 1166 Query: 214 DSAITLLKVIVNRFPMS*PRTRPSFT*LKSPTLMPVSL 101 +++ + S P+T P T L +PT P SL Sbjct: 1167 GGGCNMIQPVTAAVAPS-PQTIPITTLLVNPTSFPCSL 1203
>TRUD_PSYAR (Q4FR14) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 403 Score = 30.4 bits (67), Expect = 3.8 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 23/116 (19%) Frame = +3 Query: 15 AGTKDKRAITTQQVTLF----KVHASRLAALNNKLT-GIKVGDFNYVKEGLVLGQLMGNR 179 +G KD+ A+TTQ +L ++ S A ++ + + + + + L G N+ Sbjct: 88 SGLKDRHALTTQWFSLRIPKKQLPDSEFAPVDISANESVTILEQQWHNKKLNRGTHRANQ 147 Query: 180 FTITLRSV------------IAESEDVIKAA------VDGLIKSGFINYYGLQRFG 293 F ITLR + I+ SE + A + + +SG NY+G QRFG Sbjct: 148 FIITLRDIEFASFEASLSLQISASEQPMSAKQAVEQHLTTISQSGVPNYFGPQRFG 203
>CLPB2_STRAW (Q826F2) Chaperone clpB 2| Length = 879 Score = 29.6 bits (65), Expect = 6.5 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 10/84 (11%) Frame = +3 Query: 192 LRSVIAESEDVIKAAVDG---LIKSGFINYYG---LQRFGSASVPTHLVGAALLRGEWRS 353 LR +AE ++ G + G+ YG L+R+ S V T LVG ALLRG+ + Sbjct: 792 LRQRLAERRITVELTDAGREVIAHQGYDPVYGARPLRRYISHEVET-LVGRALLRGDVQD 850 Query: 354 AVSLILDPREGE----YDDMNGVR 413 ++ +D GE YD V+ Sbjct: 851 GATVRVDAEHGELVVTYDQPEDVK 874
>SRGP2_HUMAN (O43295) SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3)| (srGAP2) (WAVE-associated Rac GTPase-activating protein) (WRP) (Mental disorder-associated GAP) (Rho-GTPase-activating protein 14) Length = 1099 Score = 29.6 bits (65), Expect = 6.5 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +3 Query: 180 FTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEW-RSA 356 F ++ + I +S I V+ I+ +IN YGLQ+ G VP V ++ + R Sbjct: 504 FNGSMEAFIKDSGQAIPLVVESCIR--YINLYGLQQQGIFRVPGSQVEVNDIKNSFERGE 561 Query: 357 VSLILDPREGEYDDMNGVREHY 422 L+ D E + + + GV + Y Sbjct: 562 DPLVDDQNERDINSVAGVLKLY 583
>RSA3_PICAN (Q5QT59) Ribosome assembly protein 3| Length = 152 Score = 29.3 bits (64), Expect = 8.5 Identities = 19/80 (23%), Positives = 38/80 (47%) Frame = +3 Query: 3 SFRIAGTKDKRAITTQQVTLFKVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRF 182 ++ I G + + QV L +++A RLA++ L+G D N V++ + + + N + Sbjct: 43 TYTIDGLDTQEVSDSTQVRLQQLNADRLASIEQSLSGNLKLDINAVRQIDDVREQLQNEY 102 Query: 183 TITLRSVIAESEDVIKAAVD 242 L +E D ++ D Sbjct: 103 LKKLLVTYSEDLDALRQKTD 122
>PROB_ACIAD (Q6F9D9) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 377 Score = 29.3 bits (64), Expect = 8.5 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +3 Query: 66 KVHASRLAALNNKLTGIKVGDFNYVKEGLVLGQLMGNRFTITLRSVIAESE 218 KV A+RLAA + T I G+ ++V L+ G+L+G F+ + A + Sbjct: 226 KVRAARLAAKSGCPTLIASGESDHVLSRLMSGELLGTLFSTDKDRITAHQQ 276
>SRGP2_MOUSE (Q812A2) SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3)| (srGAP2) (WAVE-associated Rac GTPase-activating protein) (WRP) (Rho-GTPase-activating protein 14) Length = 1099 Score = 29.3 bits (64), Expect = 8.5 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = +3 Query: 180 FTITLRSVIAESEDVIKAAVDGLIKSGFINYYGLQRFGSASVPTHLVGAALLRGEW-RSA 356 F ++ + I +S I + I+ FIN YGLQ+ G VP V ++ + R Sbjct: 504 FNGSMEAFIKDSGQAIPLVAESCIR--FINLYGLQQQGIFRVPGSQVEVNDIKNSFERGE 561 Query: 357 VSLILDPREGEYDDMNGVREHY 422 L+ D E + + + GV + Y Sbjct: 562 DPLVDDQNERDINSVAGVLKLY 583 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,380,045 Number of Sequences: 219361 Number of extensions: 1547749 Number of successful extensions: 4526 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 4329 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4421 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
