| Clone Name | bags26b03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124L22, full insert sequence Length = 2052 Score = 603 bits (304), Expect = e-169 Identities = 484/544 (88%) Strand = Plus / Plus Query: 1 ctgaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtg 60 |||||||||||||||||||||| || ||| |||||||||| ||||||||||| ||||||| Sbjct: 379 ctgaagacggggaaaatgataagcttaaacttggtctttcgtctatgcaaggatggcgtg 438 Query: 61 caagcatggaagatgctcattcagcattgctagatctggacaatgagacggcattctttg 120 ||| || ||||||||||||||||||||||||| |||| ||||||||||| | ||| ||| Sbjct: 439 caaacaaggaagatgctcattcagcattgctaaatcttgacaatgagacatcgttccttg 498 Query: 121 gtgtttttgacggccacggaggaagggtggttgccaaattctgtgcaaaatatctacact 180 |||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||| || Sbjct: 499 gtgtttttgatggccatggaggaagagtggttgccaaattctgtgcaaaatatttacgct 558 Query: 181 ctcaagttctcaaaagtgaagcatattcttctggtgacctaggaactgctgttcataaag 240 |||||||||||| ||||||||| ||||| |||||||| |||| ||||||||||||| || Sbjct: 559 ctcaagttctcagaagtgaagcctattcagctggtgacttaggcactgctgttcatagag 618 Query: 241 ctttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcac 300 ||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 619 ctttcttcaggatggacgaaatgatgcgaggacagagaggctggagagaactatctgcac 678 Query: 301 taggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaagag 360 | || |||||||| |||||| | |||| ||||| |||||||||||||||||||| |||| Sbjct: 679 ttggggataagataaacaagattggtggtatgattgaagggttgatttggtctccgagag 738 Query: 361 gcagtgattcgaagaatgtagaagatgactgggctcttgaggagggaccccactctgact 420 ||||||||||||| |||| | ||||||| ||| || | || |||||||||||||| || | Sbjct: 739 gcagtgattcgaataatggacaagatgattggtctttcgaagagggaccccactccgatt 798 Query: 421 ttgatgggccaacatgtggaagtacagcatgtgtagcactagtaaggaataaccaacttg 480 | | |||||||||||| ||| | |||||||||||||| ||| |||| ||||||||||||| Sbjct: 799 tcgctgggccaacatgcggatgcacagcatgtgtagcgctaataagaaataaccaacttg 858 Query: 481 tagtggcaaatgctggtgattcccggtgtgttatttctagggctggccaggcatacaatt 540 | ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 859 ttgtggcgaacgctggtgattcccgttgtgttatttctagggctggccaggcatacaatt 918 Query: 541 tgtc 544 |||| Sbjct: 919 tgtc 922
>gb|AY105092.1| Zea mays PCO133846 mRNA sequence Length = 963 Score = 478 bits (241), Expect = e-131 Identities = 427/491 (86%) Strand = Plus / Plus Query: 12 gaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgcaagcatggaa 71 |||||||||| ||| || ||||||||||||||||||||||| ||||| |||| ||||||| Sbjct: 473 gaaaatgatagacttaagtttggtctttcatctatgcaaggatggcgagcaaccatggaa 532 Query: 72 gatgctcattcagcattgctagatctggacaatgagacggcattctttggtgtttttgac 131 |||||||||||||||||||||||||| || | ||||| |||||||||||||||||||| Sbjct: 533 gatgctcattcagcattgctagatcttgatagcgagacagcattctttggtgtttttgat 592 Query: 132 ggccacggaggaagggtggttgccaaattctgtgcaaaatatctacactctcaagttctc 191 || || |||||||| || |||||||||||||||||||||||||| || |||||| ||| Sbjct: 593 ggtcatggaggaagagtcgttgccaaattctgtgcaaaatatctgcatggtcaagtcctc 652 Query: 192 aaaagtgaagcatattcttctggtgacctaggaactgctgttcataaagctttctttaga 251 ||||| ||||| ||||| ||||||||||||| |||||||| |||| ||||||||| ||| Sbjct: 653 aaaagcgaagcctattcaactggtgacctaggcactgctgtccatagagctttcttcaga 712 Query: 252 atggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggagataag 311 |||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| || Sbjct: 713 atggatgaaatgatgcaaggacagagaggttggcgagaactatctgcacttggagacaaa 772 Query: 312 atgaacaagttcagtggcatgatagaagggttgatttggtctccaagaggcagtgattcg 371 || |||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 773 ataaacaagtttagtggtatgatagaaggattgatttggtctccaaggggcagtgattca 832 Query: 372 aagaatgtagaagatgactgggctcttgaggagggaccccactctgactttgatgggcca 431 | | | | |||||| |||| | ||||||||||| ||||||||||||| ||||||| Sbjct: 833 natantcaacaagatgnttgggnttcagaggagggacctcactctgactttgctgggcca 892 Query: 432 acatgtggaagtacagcatgtgtagcactagtaaggaataaccaacttgtagtggcaaat 491 |||||||| |||||||| ||||||||| || |||| | | ||||||||| ||||| ||| Sbjct: 893 acatgtgggagtacagcgtgtgtagcattaataaganacacccaacttgttgtggcnaat 952 Query: 492 gctggtgattc 502 ||||||||||| Sbjct: 953 gctggtgattc 963
>dbj|AK120711.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001L10, full insert sequence Length = 1818 Score = 406 bits (205), Expect = e-110 Identities = 457/541 (84%) Strand = Plus / Plus Query: 1 ctgaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtg 60 ||||||| || ||||||||||| || |||||||| || |||||||||||||| ||||||| Sbjct: 309 ctgaagatggcgaaaatgataagcttaaatttggactctcatctatgcaaggatggcgtg 368 Query: 61 caagcatggaagatgctcattcagcattgctagatctggacaatgagacggcattctttg 120 ||| ||||| |||||||||||||| ||||||||| | || ||||| || ||||||||| Sbjct: 369 caactatggaggatgctcattcagctttgctagatatcgataatgacacatcattctttg 428 Query: 121 gtgtttttgacggccacggaggaagggtggttgccaaattctgtgcaaaatatctacact 180 ||||||| || || || |||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 429 gtgttttcgatggacatggaggaagagtggttgctaaattctgtgcaaaatatctgcaca 488 Query: 181 ctcaagttctcaaaagtgaagcatattcttctggtgacctaggaactgctgttcataaag 240 ||||||||| |||||| || ||||| | |||||||| || | ||| | ||||||| Sbjct: 489 gagaagttctcagaagtgaggcctattcagcaggtgacctgggcaatgcagcccataaag 548 Query: 241 ctttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcac 300 ||||||||||||||||||| ||||||||||| || ||||| ||| |||||||| |||| Sbjct: 549 ctttctttagaatggatgagatgatgcgaggtcaaagaggctggcgagaactacaagcac 608 Query: 301 taggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaagag 360 | ||||||||||| ||| || | ||||||||||||||||| ||||| ||||||||||||| Sbjct: 609 ttggagataagataaaccagattagtggcatgatagaaggcttgatctggtctccaagag 668 Query: 361 gcagtgattcgaagaatgtagaagatgactgggctcttgaggagggaccccactctgact 420 |||||||||| || || | | ||||| |||||| |||| ||||| || |||||||||| Sbjct: 669 gcagtgattcaaatgatcaacacgatgattgggcttttgaagaggggccacactctgact 728 Query: 421 ttgatgggccaacatgtggaagtacagcatgtgtagcactagtaaggaataaccaacttg 480 ||| ||||||||| ||||| || ||||| ||||| ||| ||||||| |||| |||||||| Sbjct: 729 ttgctgggccaacctgtgggagcacagcttgtgttgcaatagtaagaaatagccaacttg 788 Query: 481 tagtggcaaatgctggtgattcccggtgtgttatttctagggctggccaggcatacaatt 540 | || |||||||||||||||||||| |||||||| || ||| ||| ||||||||||||| Sbjct: 789 ttgtcgcaaatgctggtgattcccgctgtgttatctcaaggaatggtcaggcatacaatt 848 Query: 541 t 541 | Sbjct: 849 t 849
>dbj|AK112023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H05, full insert sequence Length = 1693 Score = 406 bits (205), Expect = e-110 Identities = 457/541 (84%) Strand = Plus / Plus Query: 1 ctgaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtg 60 ||||||| || ||||||||||| || |||||||| || |||||||||||||| ||||||| Sbjct: 330 ctgaagatggcgaaaatgataagcttaaatttggactctcatctatgcaaggatggcgtg 389 Query: 61 caagcatggaagatgctcattcagcattgctagatctggacaatgagacggcattctttg 120 ||| ||||| |||||||||||||| ||||||||| | || ||||| || ||||||||| Sbjct: 390 caactatggaggatgctcattcagctttgctagatatcgataatgacacatcattctttg 449 Query: 121 gtgtttttgacggccacggaggaagggtggttgccaaattctgtgcaaaatatctacact 180 ||||||| || || || |||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 450 gtgttttcgatggacatggaggaagagtggttgctaaattctgtgcaaaatatctgcaca 509 Query: 181 ctcaagttctcaaaagtgaagcatattcttctggtgacctaggaactgctgttcataaag 240 ||||||||| |||||| || ||||| | |||||||| || | ||| | ||||||| Sbjct: 510 gagaagttctcagaagtgaggcctattcagcaggtgacctgggcaatgcagcccataaag 569 Query: 241 ctttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcac 300 ||||||||||||||||||| ||||||||||| || ||||| ||| |||||||| |||| Sbjct: 570 ctttctttagaatggatgagatgatgcgaggtcaaagaggctggcgagaactacaagcac 629 Query: 301 taggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaagag 360 | ||||||||||| ||| || | ||||||||||||||||| ||||| ||||||||||||| Sbjct: 630 ttggagataagataaaccagattagtggcatgatagaaggcttgatctggtctccaagag 689 Query: 361 gcagtgattcgaagaatgtagaagatgactgggctcttgaggagggaccccactctgact 420 |||||||||| || || | | ||||| |||||| |||| ||||| || |||||||||| Sbjct: 690 gcagtgattcaaatgatcaacacgatgattgggcttttgaagaggggccacactctgact 749 Query: 421 ttgatgggccaacatgtggaagtacagcatgtgtagcactagtaaggaataaccaacttg 480 ||| ||||||||| ||||| || ||||| ||||| ||| ||||||| |||| |||||||| Sbjct: 750 ttgctgggccaacctgtgggagcacagcttgtgttgcaatagtaagaaatagccaacttg 809 Query: 481 tagtggcaaatgctggtgattcccggtgtgttatttctagggctggccaggcatacaatt 540 | || |||||||||||||||||||| |||||||| || ||| ||| ||||||||||||| Sbjct: 810 ttgtcgcaaatgctggtgattcccgctgtgttatctcaaggaatggtcaggcatacaatt 869 Query: 541 t 541 | Sbjct: 870 t 870
>gb|AF213455.1|AF213455 Zea mays protein phosphatase type-2C (pp2c-1) mRNA, complete cds Length = 1107 Score = 337 bits (170), Expect = 2e-89 Identities = 449/542 (82%) Strand = Plus / Plus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| |||||||| |||||||| ||||| || ||||||||||||||||||||||||||| Sbjct: 43 gaagatggggaaaacgataaacttaaattcggactttcatctatgcaagggtggcgtgca 102 Query: 63 agcatggaagatgctcattcagcattgctagatctggacaatgagacggcattctttggt 122 | |||||||| ||||| || || ||||||||||| |||||||| || |||| ||||||| Sbjct: 103 actatggaagacgctcactcggctttgctagatcttgacaatgacactgcatcctttggt 162 Query: 123 gtttttgacggccacggaggaagggtggttgccaaattctgtgcaaaatatctacactct 182 |||||||| || || ||||||| || |||||||||||||||||||||||||||||| Sbjct: 163 gtttttgatggacatggaggaaaagtagttgccaaattctgtgcaaaatatctacacaga 222 Query: 183 caagttctcaaaagtgaagcatattcttctggtgacctaggaactgctgttcataaagct 242 |||||||| | | ||||| ||| || |||||||||| || ||||||| || | |||| Sbjct: 223 gaagttctccataccgaagcctatgctgctggtgacctgggtgctgctgtccacagagct 282 Query: 243 ttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcacta 302 | ||| |||||||||||||||||||| || || ||||| ||| | ||||| ||||| Sbjct: 283 tacttaagaatggatgaaatgatgcggggtcaaagaggatggcgggaactccaagcactt 342 Query: 303 ggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaagaggc 362 ||||||||||| || |||||| |||||| |||||||| ||||||||||| || | || Sbjct: 343 ggagataagataaatcagttcactggcataatagaaggcttgatttggtcccctaaagca 402 Query: 363 agtgattcgaagaatgtagaagatgactgggctcttgaggagggaccccactctgacttt 422 |||||||| || || | | ||||| |||||| | ||||||||||| |||||||||||| Sbjct: 403 agtgattcaaatgatagacatgatgattgggctttcgaggagggaccacactctgacttt 462 Query: 423 gatgggccaacatgtggaagtacagcatgtgtagcactagtaaggaataaccaacttgta 482 |||||||| ||||| |||||||||||||||||| |||| || |||| ||||| || Sbjct: 463 actgggccaaattgtgggagtacagcatgtgtagcattagtcagaaataggcaactcgtt 522 Query: 483 gtggcaaatgctggtgattcccggtgtgttatttctagggctggccaggcatacaatttg 542 ||||||||||||||||| ||||| || || || || ||| ||||||||||||||||||| Sbjct: 523 gtggcaaatgctggtgactcccgctgcgtcatctcaaggaatggccaggcatacaatttg 582 Query: 543 tc 544 || Sbjct: 583 tc 584
>gb|AY104016.1| Zea mays PCO109282 mRNA sequence Length = 1486 Score = 313 bits (158), Expect = 3e-82 Identities = 446/542 (82%) Strand = Plus / Plus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| || Sbjct: 200 gaagatggggaaaatgataaacttaaattcggagtttcatctatgcaagggtggcgtaca 259 Query: 63 agcatggaagatgctcattcagcattgctagatctggacaatgagacggcattctttggt 122 | |||||||||||||| || || ||||||||||| |||||||| || || || |||||| Sbjct: 260 actatggaagatgctcactcggctttgctagatctcgacaatgacactgcgttttttggt 319 Query: 123 gtttttgacggccacggaggaagggtggttgccaaattctgtgcaaaatatctacactct 182 |||||||| || || ||||||| || || ||||||||||||||||||||||||||| Sbjct: 320 gtttttgatggacatggaggaaaagtagtcgccaaattctgtgcaaaatatctacacaga 379 Query: 183 caagttctcaaaagtgaagcatattcttctggtgacctaggaactgctgttcataaagct 242 ||||||||| |||||||| ||| | |||||||||| || ||||||| || | |||| Sbjct: 380 gaagttctcaggagtgaagcctatgcagctggtgacctgggtgctgctgtccacagagct 439 Query: 243 ttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcacta 302 | ||| ||||||||||||||||||||||| || ||||| ||| | ||||| ||||| Sbjct: 440 tacttcagaatggatgaaatgatgcgaggtcaaagaggatggcgggaacttcaagcactt 499 Query: 303 ggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaagaggc 362 ||||||||||| || |||| |||||||| |||||||| || ||||||||||| | || Sbjct: 500 ggagataagataaatcagtttagtggcataatagaaggcttaatttggtctcctaaagca 559 Query: 363 agtgattcgaagaatgtagaagatgactgggctcttgaggagggaccccactctgacttt 422 |||||||| || || | | ||||| |||||| ||||||||||||| |||||||| ||| Sbjct: 560 agtgattcaaatgatagacatgatgattgggcttttgaggagggaccacactctgatttt 619 Query: 423 gatgggccaacatgtggaagtacagcatgtgtagcactagtaaggaataaccaacttgta 482 |||||||| ||||| |||||||| |||||||| | | || ||||| ||||| || Sbjct: 620 actgggccaaattgtgggagtacagcctgtgtagctttgatcagaaataagcaactcgtt 679 Query: 483 gtggcaaatgctggtgattcccggtgtgttatttctagggctggccaggcatacaatttg 542 ||||||||||||||||| ||||| ||||| || || ||| ||| ||||||||||||||| Sbjct: 680 gtggcaaatgctggtgactcccgctgtgtcatctcaaggaatggtcaggcatacaatttg 739 Query: 543 tc 544 || Sbjct: 740 tc 741
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 168 bits (85), Expect = 1e-38 Identities = 124/137 (90%) Strand = Plus / Plus Query: 252 atggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggagataag 311 ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 4452608 atggacgaaatgatgcgaggacagagaggctggagagaactatctgcacttggagataag 4452667 Query: 312 atgaacaagttcagtggcatgatagaagggttgatttggtctccaagaggcagtgattcg 371 || |||||| | |||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 4452668 ataaacaagattggtggtatgattgaagggttgatttggtctccgagaggcagtgattcg 4452727 Query: 372 aagaatgtagaagatga 388 || |||| | ||||||| Sbjct: 4452728 aataatggacaagatga 4452744 Score = 153 bits (77), Expect = 7e-34 Identities = 116/129 (89%) Strand = Plus / Plus Query: 403 agggaccccactctgactttgatgggccaacatgtggaagtacagcatgtgtagcactag 462 ||||||||||||| || |||| |||||||||||| ||| | |||||||||||||| ||| Sbjct: 4452838 agggaccccactccgattttgctgggccaacatgcggatgcacagcatgtgtagcgctaa 4452897 Query: 463 taaggaataaccaacttgtagtggcaaatgctggtgattcccggtgtgttatttctaggg 522 |||| |||||||||||||| ||||| || |||||||||||||| |||||||||||||||| Sbjct: 4452898 taagaaataaccaacttgttgtggcgaacgctggtgattcccgttgtgttatttctaggg 4452957 Query: 523 ctggccagg 531 ||||||||| Sbjct: 4452958 ctggccagg 4452966 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 140 aggaagggtggttgccaaattctgtgcaaaatatctacactctcaagttctcaaaagtga 199 |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 4452384 aggaagagtggttgccaaattctgtgcaaaatatttacactctcaagttctcagaagtga 4452443 Query: 200 agcatattcttctggtgacctaggaactgctgttcataaagctttctt 247 ||| ||||| |||||||| |||| ||||||||||||| ||||||||| Sbjct: 4452444 agcctattcagctggtgacttaggcactgctgttcatagagctttctt 4452491 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 1 ctgaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtg 60 |||||||||||||||||||||| || ||| |||||||||| ||||||||||| ||||||| Sbjct: 4451667 ctgaagacggggaaaatgataagcttaaacttggtctttcgtctatgcaaggatggcgtg 4451726 Query: 61 caagcatggaagatgct 77 ||| ||||||||||||| Sbjct: 4451727 caaacatggaagatgct 4451743 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 78 cattcagcattgctagatctggacaatgagacggcattctttggtgtttttgacggccac 137 ||||||||||||||| |||| ||||||||||| | ||||||||||||||||| ||||| Sbjct: 4452197 cattcagcattgctaaatcttgacaatgagacatcgttctttggtgtttttgatggccat 4452256 Query: 138 ggagg 142 ||||| Sbjct: 4452257 ggagg 4452261 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 107 gacggcattctttggtgtttttgacggccacggagg 142 |||| ||||||||||||||| ||| ||||| ||||| Sbjct: 23458624 gacgtcattctttggtgtttatgatggccatggagg 23458659
>dbj|AP004840.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544B02 Length = 156339 Score = 168 bits (85), Expect = 1e-38 Identities = 124/137 (90%) Strand = Plus / Plus Query: 252 atggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggagataag 311 ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 136172 atggacgaaatgatgcgaggacagagaggctggagagaactatctgcacttggagataag 136231 Query: 312 atgaacaagttcagtggcatgatagaagggttgatttggtctccaagaggcagtgattcg 371 || |||||| | |||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 136232 ataaacaagattggtggtatgattgaagggttgatttggtctccgagaggcagtgattcg 136291 Query: 372 aagaatgtagaagatga 388 || |||| | ||||||| Sbjct: 136292 aataatggacaagatga 136308 Score = 153 bits (77), Expect = 7e-34 Identities = 116/129 (89%) Strand = Plus / Plus Query: 403 agggaccccactctgactttgatgggccaacatgtggaagtacagcatgtgtagcactag 462 ||||||||||||| || |||| |||||||||||| ||| | |||||||||||||| ||| Sbjct: 136402 agggaccccactccgattttgctgggccaacatgcggatgcacagcatgtgtagcgctaa 136461 Query: 463 taaggaataaccaacttgtagtggcaaatgctggtgattcccggtgtgttatttctaggg 522 |||| |||||||||||||| ||||| || |||||||||||||| |||||||||||||||| Sbjct: 136462 taagaaataaccaacttgttgtggcgaacgctggtgattcccgttgtgttatttctaggg 136521 Query: 523 ctggccagg 531 ||||||||| Sbjct: 136522 ctggccagg 136530 Score = 143 bits (72), Expect = 7e-31 Identities = 99/108 (91%) Strand = Plus / Plus Query: 140 aggaagggtggttgccaaattctgtgcaaaatatctacactctcaagttctcaaaagtga 199 |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 135948 aggaagagtggttgccaaattctgtgcaaaatatttacactctcaagttctcagaagtga 136007 Query: 200 agcatattcttctggtgacctaggaactgctgttcataaagctttctt 247 ||| ||||| |||||||| |||| ||||||||||||| ||||||||| Sbjct: 136008 agcctattcagctggtgacttaggcactgctgttcatagagctttctt 136055 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 1 ctgaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtg 60 |||||||||||||||||||||| || ||| |||||||||| ||||||||||| ||||||| Sbjct: 135231 ctgaagacggggaaaatgataagcttaaacttggtctttcgtctatgcaaggatggcgtg 135290 Query: 61 caagcatggaagatgct 77 ||| ||||||||||||| Sbjct: 135291 caaacatggaagatgct 135307 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 78 cattcagcattgctagatctggacaatgagacggcattctttggtgtttttgacggccac 137 ||||||||||||||| |||| ||||||||||| | ||||||||||||||||| ||||| Sbjct: 135761 cattcagcattgctaaatcttgacaatgagacatcgttctttggtgtttttgatggccat 135820 Query: 138 ggagg 142 ||||| Sbjct: 135821 ggagg 135825
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 123 bits (62), Expect = 6e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 249 agaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggagat 308 ||||||||||| ||||||||||| || ||||| ||| |||||||| ||||| |||||| Sbjct: 26283618 agaatggatgagatgatgcgaggtcaaagaggctggcgagaactacaagcacttggagat 26283559 Query: 309 aagatgaacaagttcagtggcatgatagaagggttgatttggtctccaagaggcagtgat 368 ||||| ||| || | ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 26283558 aagataaaccagattagtggcatgatagaaggcttgatctggtctccaagaggcagtgat 26283499 Query: 369 tc 370 || Sbjct: 26283498 tc 26283497 Score = 111 bits (56), Expect = 2e-21 Identities = 92/104 (88%) Strand = Plus / Minus Query: 411 cactctgactttgatgggccaacatgtggaagtacagcatgtgtagcactagtaaggaat 470 ||||||||||||| ||||||||| ||||| || ||||| ||||| ||| ||||||| ||| Sbjct: 26283066 cactctgactttgctgggccaacctgtgggagcacagcttgtgttgcaatagtaagaaat 26283007 Query: 471 aaccaacttgtagtggcaaatgctggtgattcccggtgtgttat 514 | ||||||||| || |||||||||||||||||||| |||||||| Sbjct: 26283006 agccaacttgttgtcgcaaatgctggtgattcccgctgtgttat 26282963 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 1 ctgaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtg 60 ||||||| || ||||||||||| || |||||||| || |||||||||||||| ||||||| Sbjct: 26284858 ctgaagatggcgaaaatgataagcttaaatttggactctcatctatgcaaggatggcgtg 26284799 Query: 61 caagcatggaagatgct 77 ||| ||||| |||||| Sbjct: 26284798 caactatggaggatgct 26284782 Score = 69.9 bits (35), Expect = 8e-09 Identities = 92/111 (82%) Strand = Plus / Minus Query: 140 aggaagggtggttgccaaattctgtgcaaaatatctacactctcaagttctcaaaagtga 199 |||||| |||||||| |||||||||||||||||||| ||| ||||||||| |||||| Sbjct: 26283819 aggaagagtggttgctaaattctgtgcaaaatatctgcacagagaagttctcagaagtga 26283760 Query: 200 agcatattcttctggtgacctaggaactgctgttcataaagctttctttag 250 || ||||| | |||||||| || | ||| | ||||||||||||||||| Sbjct: 26283759 ggcctattcagcaggtgacctgggcaatgcagcccataaagctttctttag 26283709 Score = 44.1 bits (22), Expect = 0.47 Identities = 43/50 (86%) Strand = Plus / Minus Query: 78 cattcagcattgctagatctggacaatgagacggcattctttggtgtttt 127 |||||||| ||||||||| | || ||||| || |||||||||||||||| Sbjct: 26283974 cattcagctttgctagatatcgataatgacacatcattctttggtgtttt 26283925
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0453H04 Length = 175047 Score = 123 bits (62), Expect = 6e-25 Identities = 107/122 (87%) Strand = Plus / Minus Query: 249 agaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggagat 308 ||||||||||| ||||||||||| || ||||| ||| |||||||| ||||| |||||| Sbjct: 148158 agaatggatgagatgatgcgaggtcaaagaggctggcgagaactacaagcacttggagat 148099 Query: 309 aagatgaacaagttcagtggcatgatagaagggttgatttggtctccaagaggcagtgat 368 ||||| ||| || | ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 148098 aagataaaccagattagtggcatgatagaaggcttgatctggtctccaagaggcagtgat 148039 Query: 369 tc 370 || Sbjct: 148038 tc 148037 Score = 111 bits (56), Expect = 2e-21 Identities = 92/104 (88%) Strand = Plus / Minus Query: 411 cactctgactttgatgggccaacatgtggaagtacagcatgtgtagcactagtaaggaat 470 ||||||||||||| ||||||||| ||||| || ||||| ||||| ||| ||||||| ||| Sbjct: 147606 cactctgactttgctgggccaacctgtgggagcacagcttgtgttgcaatagtaagaaat 147547 Query: 471 aaccaacttgtagtggcaaatgctggtgattcccggtgtgttat 514 | ||||||||| || |||||||||||||||||||| |||||||| Sbjct: 147546 agccaacttgttgtcgcaaatgctggtgattcccgctgtgttat 147503 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 1 ctgaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtg 60 ||||||| || ||||||||||| || |||||||| || |||||||||||||| ||||||| Sbjct: 149398 ctgaagatggcgaaaatgataagcttaaatttggactctcatctatgcaaggatggcgtg 149339 Query: 61 caagcatggaagatgct 77 ||| ||||| |||||| Sbjct: 149338 caactatggaggatgct 149322 Score = 69.9 bits (35), Expect = 8e-09 Identities = 92/111 (82%) Strand = Plus / Minus Query: 140 aggaagggtggttgccaaattctgtgcaaaatatctacactctcaagttctcaaaagtga 199 |||||| |||||||| |||||||||||||||||||| ||| ||||||||| |||||| Sbjct: 148359 aggaagagtggttgctaaattctgtgcaaaatatctgcacagagaagttctcagaagtga 148300 Query: 200 agcatattcttctggtgacctaggaactgctgttcataaagctttctttag 250 || ||||| | |||||||| || | ||| | ||||||||||||||||| Sbjct: 148299 ggcctattcagcaggtgacctgggcaatgcagcccataaagctttctttag 148249 Score = 44.1 bits (22), Expect = 0.47 Identities = 43/50 (86%) Strand = Plus / Minus Query: 78 cattcagcattgctagatctggacaatgagacggcattctttggtgtttt 127 |||||||| ||||||||| | || ||||| || |||||||||||||||| Sbjct: 148514 cattcagctttgctagatatcgataatgacacatcattctttggtgtttt 148465
>gb|AY104507.1| Zea mays PCO148355 mRNA sequence Length = 1212 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 234 cataaagctttctttagaatggatgaaatgatgcgaggacagagaggttggagagaacta 293 |||||||||||||| ||||||||||| |||||| ||| ||||| ||||||||||||||| Sbjct: 68 cataaagctttcttaagaatggatgagatgatgaaagggcagaggggttggagagaacta 127 Query: 294 tctgcactaggagataag 311 ||| || ||||||||| Sbjct: 128 actgagctgggagataag 145 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 486 gcaaatgctggtgattcccggtgtgttat 514 ||||||||||| ||||| ||||||||||| Sbjct: 320 gcaaatgctggggattctcggtgtgttat 348
>ref|NM_128064.2| Arabidopsis thaliana catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase AT2G25070 mRNA, complete cds Length = 1517 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 243 ttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcacta 302 ||||||||||||||||| ||||||| |||||| ||||| ||| |||| || ||| ||| Sbjct: 455 ttctttagaatggatgacatgatgcaaggacaaagaggatggcgagagttagctgtactt 514 Query: 303 ggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 || || ||||||||||| || || |||||||| ||||| || || ||||| |||||| Sbjct: 515 ggcgacaagatgaacaaatttagcggcatgattgaaggatttatatggtcaccaaga 571 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 15 aatgataaactcaaatttggtctttcatctatgcaagggtggcgtgcaagcatggaaga 73 |||||||| |||| ||||||| | || ||||||||||| ||||| || | ||||||||| Sbjct: 227 aatgataagctcagatttggtttatcgtctatgcaaggttggcgcgctaccatggaaga 285
>gb|AY091209.1| Arabidopsis thaliana putative protein phosphatase 2C (At2g25070) mRNA, complete cds Length = 1099 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 243 ttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcacta 302 ||||||||||||||||| ||||||| |||||| ||||| ||| |||| || ||| ||| Sbjct: 283 ttctttagaatggatgacatgatgcaaggacaaagaggatggcgagagttagctgtactt 342 Query: 303 ggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 || || ||||||||||| || || |||||||| ||||| || || ||||| |||||| Sbjct: 343 ggcgacaagatgaacaaatttagcggcatgattgaaggatttatatggtcaccaaga 399 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 15 aatgataaactcaaatttggtctttcatctatgcaagggtggcgtgcaagcatggaaga 73 |||||||| |||| ||||||| | || ||||||||||| ||||| || | ||||||||| Sbjct: 55 aatgataagctcagatttggtttatcgtctatgcaaggttggcgcgctaccatggaaga 113
>gb|AY050873.1| Arabidopsis thaliana putative protein phosphatase 2C (At2g25070) mRNA, complete cds Length = 1522 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 243 ttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcacta 302 ||||||||||||||||| ||||||| |||||| ||||| ||| |||| || ||| ||| Sbjct: 443 ttctttagaatggatgacatgatgcaaggacaaagaggatggcgagagttagctgtactt 502 Query: 303 ggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 || || ||||||||||| || || |||||||| ||||| || || ||||| |||||| Sbjct: 503 ggcgacaagatgaacaaatttagcggcatgattgaaggatttatatggtcaccaaga 559 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 15 aatgataaactcaaatttggtctttcatctatgcaagggtggcgtgcaagcatggaaga 73 |||||||| |||| ||||||| | || ||||||||||| ||||| || | ||||||||| Sbjct: 215 aatgataagctcagatttggtttatcgtctatgcaaggttggcgcgctaccatggaaga 273
>gb|AY088966.1| Arabidopsis thaliana clone 11428 mRNA, complete sequence Length = 1458 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 243 ttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcacta 302 ||||||||||||||||| ||||||| |||||| ||||| ||| |||| || ||| ||| Sbjct: 453 ttctttagaatggatgacatgatgcaaggacaaagaggatggcgagagttagctgtactt 512 Query: 303 ggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 || || ||||||||||| || || |||||||| ||||| || || ||||| |||||| Sbjct: 513 ggcgacaagatgaacaaatttagcggcatgattgaaggatttatatggtcaccaaga 569 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 15 aatgataaactcaaatttggtctttcatctatgcaagggtggcgtgcaagcatggaaga 73 |||||||| |||| ||||||| | || ||||||||||| ||||| || | ||||||||| Sbjct: 227 aatgataagctcagatttggtttatcgtctatgcaaggttggcgcgctaccatggaaga 285
>dbj|AB079671.1| Arabidopsis thaliana AtPPC4;2 mRNA for protein phosphatase 2C, complete cds Length = 1463 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 243 ttctttagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcacta 302 ||||||||||||||||| ||||||| |||||| ||||| ||| |||| || ||| ||| Sbjct: 425 ttctttagaatggatgacatgatgcaaggacaaagaggatggcgagagttagctgtactt 484 Query: 303 ggagataagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 || || ||||||||||| || || |||||||| ||||| || || ||||| |||||| Sbjct: 485 ggcgacaagatgaacaaatttagcggcatgattgaaggatttatatggtcaccaaga 541 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 15 aatgataaactcaaatttggtctttcatctatgcaagggtggcgtgcaagcatggaaga 73 |||||||| |||| ||||||| | || ||||||||||| ||||| || | ||||||||| Sbjct: 197 aatgataagctcagatttggtttatcgtctatgcaaggttggcgcgctaccatggaaga 255
>gb|AC006585.8| Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence Length = 103495 Score = 63.9 bits (32), Expect = 5e-07 Identities = 92/112 (82%) Strand = Plus / Plus Query: 248 tagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggaga 307 |||||||||||| ||||||| |||||| ||||| ||| |||| || ||| ||| || || Sbjct: 2254 tagaatggatgacatgatgcaaggacaaagaggatggcgagagttagctgtacttggcga 2313 Query: 308 taagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 ||||||||||| || || |||||||| ||||| || || ||||| |||||| Sbjct: 2314 caagatgaacaaatttagcggcatgattgaaggatttatatggtcaccaaga 2365 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 15 aatgataaactcaaatttggtctttcatctatgcaagggtggcgtgcaagcatggaaga 73 |||||||| |||| ||||||| | || ||||||||||| ||||| || | ||||||||| Sbjct: 1680 aatgataagctcagatttggtttatcgtctatgcaaggttggcgcgctaccatggaaga 1738
>ref|NM_119336.2| Arabidopsis thaliana catalytic/ protein phosphatase type 2C AT4G31860 transcript variant AT4G31860.1 mRNA, complete cds Length = 2023 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| || |||||| ||||||||| || |||| | || ||||||||||| |||||||| Sbjct: 254 gaagatggcgaaaatcataaactcagatatggtttatcctctatgcaaggttggcgtgcg 313 Query: 63 agcatggaagatgctcat 80 |||||||||||||||| Sbjct: 314 tccatggaagatgctcat 331 Score = 50.1 bits (25), Expect = 0.008 Identities = 118/149 (79%) Strand = Plus / Plus Query: 211 ctggtgacctaggaactgctgttcataaagctttctttagaatggatgaaatgatgcgag 270 |||| ||| |||| ||| || |||| ||||| || || ||||||||||| ||||||| || Sbjct: 462 ctggagacgtagggacttctcttcaaaaagcatttttcagaatggatgagatgatgcaag 521 Query: 271 gacagagaggttggagagaactatctgcactaggagataagatgaacaagttcagtggca 330 |||| ||||| ||| |||| || | | ||| || || || || || ||||||||||| | Sbjct: 522 gacaaagagggtggcgagagttagcagtacttggtgacaaaatcaataagttcagtggga 581 Query: 331 tgatagaagggttgatttggtctccaaga 359 |||| |||||| | || ||||| |||||| Sbjct: 582 tgattgaagggcttatatggtcaccaaga 610
>ref|NM_202927.1| Arabidopsis thaliana catalytic/ protein phosphatase type 2C AT4G31860 transcript variant AT4G31860.2 mRNA, complete cds Length = 2108 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| || |||||| ||||||||| || |||| | || ||||||||||| |||||||| Sbjct: 254 gaagatggcgaaaatcataaactcagatatggtttatcctctatgcaaggttggcgtgcg 313 Query: 63 agcatggaagatgctcat 80 |||||||||||||||| Sbjct: 314 tccatggaagatgctcat 331 Score = 50.1 bits (25), Expect = 0.008 Identities = 118/149 (79%) Strand = Plus / Plus Query: 211 ctggtgacctaggaactgctgttcataaagctttctttagaatggatgaaatgatgcgag 270 |||| ||| |||| ||| || |||| ||||| || || ||||||||||| ||||||| || Sbjct: 462 ctggagacgtagggacttctcttcaaaaagcatttttcagaatggatgagatgatgcaag 521 Query: 271 gacagagaggttggagagaactatctgcactaggagataagatgaacaagttcagtggca 330 |||| ||||| ||| |||| || | | ||| || || || || || ||||||||||| | Sbjct: 522 gacaaagagggtggcgagagttagcagtacttggtgacaaaatcaataagttcagtggga 581 Query: 331 tgatagaagggttgatttggtctccaaga 359 |||| |||||| | || ||||| |||||| Sbjct: 582 tgattgaagggcttatatggtcaccaaga 610
>gb|AY113024.1| Arabidopsis thaliana AT4g31860/F11C18_60 mRNA, complete cds Length = 1074 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| || |||||| ||||||||| || |||| | || ||||||||||| |||||||| Sbjct: 43 gaagatggcgaaaatcataaactcagatatggtttatcctctatgcaaggttggcgtgcg 102 Query: 63 agcatggaagatgctcat 80 |||||||||||||||| Sbjct: 103 tccatggaagatgctcat 120 Score = 50.1 bits (25), Expect = 0.008 Identities = 118/149 (79%) Strand = Plus / Plus Query: 211 ctggtgacctaggaactgctgttcataaagctttctttagaatggatgaaatgatgcgag 270 |||| ||| |||| ||| || |||| ||||| || || ||||||||||| ||||||| || Sbjct: 251 ctggagacgtagggacttctcttcaaaaagcatttttcagaatggatgagatgatgcaag 310 Query: 271 gacagagaggttggagagaactatctgcactaggagataagatgaacaagttcagtggca 330 |||| ||||| ||| |||| || | | ||| || || || || || ||||||||||| | Sbjct: 311 gacaaagagggtggcgagagttagcagtacttggtgacaaaatcaataagttcagtggga 370 Query: 331 tgatagaagggttgatttggtctccaaga 359 |||| |||||| | || ||||| |||||| Sbjct: 371 tgattgaagggcttatatggtcaccaaga 399
>gb|AY057611.1| Arabidopsis thaliana AT4g31860/F11C18_60 mRNA, complete cds Length = 1531 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| || |||||| ||||||||| || |||| | || ||||||||||| |||||||| Sbjct: 254 gaagatggcgaaaatcataaactcagatatggtttatcctctatgcaaggttggcgtgcg 313 Query: 63 agcatggaagatgctcat 80 |||||||||||||||| Sbjct: 314 tccatggaagatgctcat 331 Score = 50.1 bits (25), Expect = 0.008 Identities = 118/149 (79%) Strand = Plus / Plus Query: 211 ctggtgacctaggaactgctgttcataaagctttctttagaatggatgaaatgatgcgag 270 |||| ||| |||| ||| || |||| ||||| || || ||||||||||| ||||||| || Sbjct: 462 ctggagacgtagggacttctcttcaaaaagcatttttcagaatggatgagatgatgcaag 521 Query: 271 gacagagaggttggagagaactatctgcactaggagataagatgaacaagttcagtggca 330 |||| ||||| ||| |||| || | | ||| || || || || || ||||||||||| | Sbjct: 522 gacaaagagggtggcgagagttagcagtacttggtgacaaaatcaataagttcagtggga 581 Query: 331 tgatagaagggttgatttggtctccaaga 359 |||| |||||| | || ||||| |||||| Sbjct: 582 tgattgaagggcttatatggtcaccaaga 610
>emb|BX826396.1|CNS0A41V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZB07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1469 Score = 60.0 bits (30), Expect = 8e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| || |||||| ||||||||| || |||| | || ||||||||||| |||||||| Sbjct: 213 gaagatggcgaaaatcataaactcagatatggtttatcctctatgcaaggttggcgtgcg 272 Query: 63 agcatggaagatgctcat 80 |||||||||||||||| Sbjct: 273 tccatggaagatgctcat 290 Score = 46.1 bits (23), Expect = 0.12 Identities = 89/111 (80%) Strand = Plus / Plus Query: 249 agaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggagat 308 ||||||||||| ||||||| |||||| ||||| ||| |||| || | | ||| || || Sbjct: 456 agaatggatgagatgatgcaaggacaaagagggtggcgagagttagcagtacttggtgac 515 Query: 309 aagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 || || || ||||||||||| ||||| |||||| | || ||||| |||||| Sbjct: 516 aaaatcaataagttcagtgggatgattgaagggcttatatggtcaccaaga 566
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| || |||||| ||||||||| || |||| | || ||||||||||| |||||||| Sbjct: 174492 gaagatggcgaaaatcataaactcagatatggtttatcctctatgcaaggttggcgtgcg 174433 Query: 63 agcatggaagatgct 77 ||||||||||||| Sbjct: 174432 tccatggaagatgct 174418 Score = 48.1 bits (24), Expect = 0.030 Identities = 90/112 (80%) Strand = Plus / Minus Query: 248 tagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggaga 307 |||||||||||| ||||||| |||||| ||||| ||| |||| || | | ||| || || Sbjct: 173926 tagaatggatgagatgatgcaaggacaaagagggtggcgagagttagcagtacttggtga 173867 Query: 308 taagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 || || || ||||||||||| ||||| |||||| | || ||||| |||||| Sbjct: 173866 caaaatcaataagttcagtgggatgattgaagggcttatatggtcaccaaga 173815
>emb|AL049607.1|ATF11C18 Arabidopsis thaliana DNA chromosome 4, BAC clone F11C18 (ESSA project) Length = 111517 Score = 54.0 bits (27), Expect = 5e-04 Identities = 63/75 (84%) Strand = Plus / Minus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| || |||||| ||||||||| || |||| | || ||||||||||| |||||||| Sbjct: 35153 gaagatggcgaaaatcataaactcagatatggtttatcctctatgcaaggttggcgtgcg 35094 Query: 63 agcatggaagatgct 77 ||||||||||||| Sbjct: 35093 tccatggaagatgct 35079 Score = 48.1 bits (24), Expect = 0.030 Identities = 90/112 (80%) Strand = Plus / Minus Query: 248 tagaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggaga 307 |||||||||||| ||||||| |||||| ||||| ||| |||| || | | ||| || || Sbjct: 34587 tagaatggatgagatgatgcaaggacaaagagggtggcgagagttagcagtacttggtga 34528 Query: 308 taagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 || || || ||||||||||| ||||| |||||| | || ||||| |||||| Sbjct: 34527 caaaatcaataagttcagtgggatgattgaagggcttatatggtcaccaaga 34476
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 486 gcaaatgctggtgattcccggtgtgt 511 |||||||||||||||||||||||||| Sbjct: 79528 gcaaatgctggtgattcccggtgtgt 79503
>gb|AC143339.12| Medicago truncatula clone mth2-20g20, complete sequence Length = 99993 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 39 tcatctatgcaagggtggcgtgcaagcatggaagatgc 76 |||||||||||||| |||||||||| ||||||||||| Sbjct: 70667 tcatctatgcaaggttggcgtgcaacaatggaagatgc 70630
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 486 gcaaatgctggtgattcccggtgtgt 511 |||||||||||||||||||||||||| Sbjct: 21874094 gcaaatgctggtgattcccggtgtgt 21874069
>emb|BX827528.1|CNS0A3LW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS6ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1408 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 3 gaagacggggaaaatgataaactcaaatttggtctttcatctatgcaagggtggcgtgca 62 ||||| || |||||| ||||||||| || |||| | || ||||||| ||| |||||||| Sbjct: 214 gaagatggcgaaaatcataaactcagatatggtttatcctctatgcgaggttggcgtgcg 273 Query: 63 agcatggaagatgctcat 80 |||||||||||||||| Sbjct: 274 tccatggaagatgctcat 291 Score = 46.1 bits (23), Expect = 0.12 Identities = 89/111 (80%) Strand = Plus / Plus Query: 249 agaatggatgaaatgatgcgaggacagagaggttggagagaactatctgcactaggagat 308 ||||||||||| ||||||| |||||| ||||| ||| |||| || | | ||| || || Sbjct: 460 agaatggatgagatgatgcaaggacaaagagggtggcgagagttagcagtacttggtgac 519 Query: 309 aagatgaacaagttcagtggcatgatagaagggttgatttggtctccaaga 359 || || || ||||||||||| ||||| |||||| | || ||||| |||||| Sbjct: 520 aaaatcaataagttcagtgggatgattgaagggcttatatggtcaccaaga 570
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 486 gcaaatgctggtgattcccggtgtgt 511 |||||||||||||||||||||||||| Sbjct: 4811 gcaaatgctggtgattcccggtgtgt 4786
>dbj|AK111778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081L07, full insert sequence Length = 1572 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 486 gcaaatgctggtgattcccggtgtgt 511 |||||||||||||||||||||||||| Sbjct: 771 gcaaatgctggtgattcccggtgtgt 796
>ref|XM_390415.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein (FG10239.1) partial mRNA Length = 1293 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 114 ttctttggtgtttttgacggccacgg 139 ||||||||||| |||||||||||||| Sbjct: 172 ttctttggtgtctttgacggccacgg 197
>gb|AC122166.47| Medicago truncatula clone mth2-33b23, complete sequence Length = 124103 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 tcaaaagtgaagcatattcttc 211 |||||||||||||||||||||| Sbjct: 106419 tcaaaagtgaagcatattcttc 106398
>gb|AC093848.2| Homo sapiens BAC clone RP11-486G21 from 4, complete sequence Length = 175064 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 caaattctgtgcaaaatatct 175 ||||||||||||||||||||| Sbjct: 160060 caaattctgtgcaaaatatct 160080
>gb|AC008712.8| Homo sapiens chromosome 5 clone CTB-7N3, complete sequence Length = 147952 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 gttctcaaaagtgaagcatattctt 210 ||||||||||||||||||| ||||| Sbjct: 124306 gttctcaaaagtgaagcattttctt 124282
>gb|AC091882.3| Homo sapiens chromosome 5 clone RP11-101A19, complete sequence Length = 126486 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 gttctcaaaagtgaagcatattctt 210 ||||||||||||||||||| ||||| Sbjct: 64471 gttctcaaaagtgaagcattttctt 64447
>dbj|AK171267.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630321E12 product:polymerase (DNA directed), epsilon, full insert sequence Length = 1527 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 tctttagaatggatgaaatga 264 ||||||||||||||||||||| Sbjct: 156 tctttagaatggatgaaatga 136
>dbj|AK171004.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630217F19 product:polymerase (DNA directed), epsilon, full insert sequence Length = 1443 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 tctttagaatggatgaaatga 264 ||||||||||||||||||||| Sbjct: 73 tctttagaatggatgaaatga 53
>dbj|AK065211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F23, full insert sequence Length = 3196 Score = 42.1 bits (21), Expect = 1.9 Identities = 33/37 (89%) Strand = Plus / Plus Query: 107 gacggcattctttggtgtttttgacggccacggagga 143 |||| ||||||||||||||| ||| ||||| |||||| Sbjct: 1322 gacgtcattctttggtgtttatgatggccatggagga 1358
>ref|NM_106180.2| Arabidopsis thaliana transcription factor AT1G75240 mRNA, complete cds Length = 1606 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 aggagataagatgaacaagt 321 |||||||||||||||||||| Sbjct: 326 aggagataagatgaacaagt 307
>ref|XM_653870.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1358.2), mRNA Length = 918 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 483 gtggcaaatgctggtgattc 502 |||||||||||||||||||| Sbjct: 322 gtggcaaatgctggtgattc 341
>gb|AY811861.1| Schistosoma japonicum SJCHGC04009 protein mRNA, partial cds Length = 536 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 45 atgcaagggtggcgtgcaagcatggaagatgctcat 80 |||||||||||||||| | ||||||||||||||| Sbjct: 189 atgcaagggtggcgtgtacatatggaagatgctcat 224
>ref|XM_805634.1| Trypanosoma cruzi strain CL Brener protein phosphatase 2C (Tc00.1047053506221.30) partial mRNA Length = 1194 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 45 atgcaagggtggcgtgcaagcatggaagatgctcat 80 |||||||| |||||| |||||||||||||| |||| Sbjct: 340 atgcaaggatggcgtagaagcatggaagatgatcat 375
>ref|XM_816466.1| Trypanosoma cruzi strain CL Brener protein phosphatase (Tc00.1047053506925.150) partial mRNA Length = 1224 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tttggtgtttttgacggcca 136 |||||||||||||||||||| Sbjct: 151 tttggtgtttttgacggcca 170
>ref|XM_805295.1| Trypanosoma cruzi strain CL Brener protein phosphatase 2C (Tc00.1047053503989.60) partial mRNA Length = 834 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 45 atgcaagggtggcgtgcaagcatggaagatgctcat 80 |||||||| |||||| |||||||||||||| |||| Sbjct: 73 atgcaaggatggcgtagaagcatggaagatgatcat 108
>emb|AL603707.5| Mouse DNA sequence from clone RP23-422L16 on chromosome 11 Contains the 3' end of the Sat2 gene for spermidine/spermine N1-acetyl transferase 2, a ribosomal potein S15A (Rps15a) pseudogene, a ubiquitin-like 5 (Ubl5) pseudogene, the Fxr2h gene for autosomal homolog of fragile X mental retardation gene 2, the Sox15 gene for SRY-box containing gene 15, the Mpdu1 gene for mannose-P-dolichol utilization defect 1, the Cd68 gene for CD68 antigen, the Eif4a1 gene for eukaryotic translation initiation factor 4A1, the gene for sentrin/SUMO-specific protease Smt3ip1, the Tnfsf13 and Tnfsf12 genes for tumor necrosis factor (ligand) superfamily members 13 and 12, three novel genes, a ribosomal protein L13 (Rpl13) pseudogene, the Polr2a gene for polymerase (RNA) II (DNA directed) polypeptide A, the Amac1 gene for acyl-malonyl condensing enzyme, the gene for a novel BTB/POZ domain containing C2H2 type zinc finger protein, the Chrnb1 gene for nicotinic cholinergic receptor beta polypeptide 1 (muscle), the Fgf11 gene for fibroblast growth factor 11, a novel pseudogene, the gene for the ortholog of human and rat neuroligin 2 NLGN2, the gene for a novel protein of unknown function (DUF423) family member, the Plscr3 gene for phospholipid scramblase 3, the 3' end of the Tnk1 gene for non-receptor tyrosine kinase 1 and nine CpG islands, complete sequence Length = 234182 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ggtctccaagaggcagtgat 368 |||||||||||||||||||| Sbjct: 175037 ggtctccaagaggcagtgat 175018
>gb|AC108727.6| Homo sapiens 3 BAC RP11-231L11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155898 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 ccaaattctgtgcaaaatatctac 177 |||||||||||||||||| ||||| Sbjct: 99598 ccaaattctgtgcaaaatctctac 99621
>gb|AC011385.6| Homo sapiens chromosome 5 clone CTB-15L17, complete sequence Length = 134599 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 gaggacagagaggttggagagaac 291 ||||||||||||||||| |||||| Sbjct: 42201 gaggacagagaggttggggagaac 42224
>gb|AC113340.2| Homo sapiens chromosome 5 clone CTB-164L20, complete sequence Length = 84791 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 gaggacagagaggttggagagaac 291 ||||||||||||||||| |||||| Sbjct: 47126 gaggacagagaggttggggagaac 47149
>gb|AC025814.7|AC025814 Arabidopsis thaliana chromosome 1 BAC F22H5 genomic sequence, complete sequence Length = 68041 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 aggagataagatgaacaagt 321 |||||||||||||||||||| Sbjct: 25009 aggagataagatgaacaagt 25028
>gb|AY084462.1| Arabidopsis thaliana clone 10873 mRNA, complete sequence Length = 1343 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 aggagataagatgaacaagt 321 |||||||||||||||||||| Sbjct: 63 aggagataagatgaacaagt 44
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 107 gacggcattctttggtgtttttgacggccacggagg 142 |||| ||||||||||||||| ||| ||||| ||||| Sbjct: 24307 gacgtcattctttggtgtttatgatggccatggagg 24342
>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1653_F07, complete sequence Length = 110109 Score = 40.1 bits (20), Expect = 7.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 107 gacggcattctttggtgtttttgacggccacggagg 142 |||| ||||||||||||||| ||| ||||| ||||| Sbjct: 77299 gacgtcattctttggtgtttatgatggccatggagg 77334
>dbj|AK100561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104F18, full insert sequence Length = 3021 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 cattctttggtgtttttgacggccacggagga 143 ||||||||||||||| ||| ||||| |||||| Sbjct: 1201 cattctttggtgtttatgatggccatggagga 1232
>dbj|AK072375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M01, full insert sequence Length = 3667 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 112 cattctttggtgtttttgacggccacggagga 143 ||||||||||||||| ||| ||||| |||||| Sbjct: 2514 cattctttggtgtttatgatggccatggagga 2545
>emb|AL391834.8| Human DNA sequence from clone RP11-513M16 on chromosome 9, complete sequence Length = 112713 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 actgggctcttgaggaggga 407 |||||||||||||||||||| Sbjct: 89751 actgggctcttgaggaggga 89770
>emb|AL732454.12| Mouse DNA sequence from clone RP23-289P8 on chromosome X, complete sequence Length = 179447 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 atgtagaagatgactgggct 395 |||||||||||||||||||| Sbjct: 67985 atgtagaagatgactgggct 68004
>gb|J04699.1|MUSACHRBB Mouse nicotinic acetylcholine receptor beta subunit (nAChRE) gene, complete cds Length = 9722 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 ggtctccaagaggcagtgat 368 |||||||||||||||||||| Sbjct: 960 ggtctccaagaggcagtgat 979 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,189,644 Number of Sequences: 3902068 Number of extensions: 5189644 Number of successful extensions: 97504 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97231 Number of HSP's gapped (non-prelim): 262 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)