ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25l24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468735.1| Oryza sativa (japonica cultivar-group), mRNA Length = 753 Score = 291 bits (147), Expect = 1e-75 Identities = 258/296 (87%) Strand = Plus / Plus Query: 168 gttttccctctactggatggtaaagacttggtcttttgcatgcttgtatgccgccaatgg 227 ||||||||||||||||||||| ||||| | |||||||||||||||||||| || |||||| Sbjct: 37 gttttccctctactggatggtcaagacctagtcttttgcatgcttgtatgtcgtcaatgg 96 Query: 228 tgngaaattgcaaaggatgattacttctggaaatgcatctgctcacggaaatggccttcc 287 | ||||||||||||||||| ||||||||||||||||| || | |||| ||||||||| Sbjct: 97 cgagaaattgcaaaggatgactacttctggaaatgcatatgtgcgaggaagtggccttcc 156 Query: 288 atctgcaagcagcctccttctgacacaaacttncaaaagctctatttaacattctccaag 347 || |||||||| |||||||| || |||||| || |||||||||||||| |||||||| Sbjct: 157 atttgcaagcaacctccttcagatgcaaactaccagaagctctatttaaccttctccaaa 216 Query: 348 ccacggaagacagtgcatcttcctgtacctaagctcactttcaaggatctggngttttac 407 ||||||| | || ||| ||||||||||| |||||||| ||| ||||||| | ||||||| Sbjct: 217 ccacggacgccacagcaccttcctgtaccaaagctcacattcgaggatcttgtgttttac 276 Query: 408 attgacatgtggcttgagggatcattgatcttctctcaagcagtttcaggctgcat 463 ||||||||||||||||| |||||| | |||||||||||||| |||||||||||||| Sbjct: 277 attgacatgtggcttgacggatcactcatcttctctcaagctgtttcaggctgcat 332
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 291 bits (147), Expect = 1e-75 Identities = 258/296 (87%) Strand = Plus / Minus Query: 168 gttttccctctactggatggtaaagacttggtcttttgcatgcttgtatgccgccaatgg 227 ||||||||||||||||||||| ||||| | |||||||||||||||||||| || |||||| Sbjct: 138690 gttttccctctactggatggtcaagacctagtcttttgcatgcttgtatgtcgtcaatgg 138631 Query: 228 tgngaaattgcaaaggatgattacttctggaaatgcatctgctcacggaaatggccttcc 287 | ||||||||||||||||| ||||||||||||||||| || | |||| ||||||||| Sbjct: 138630 cgagaaattgcaaaggatgactacttctggaaatgcatatgtgcgaggaagtggccttcc 138571 Query: 288 atctgcaagcagcctccttctgacacaaacttncaaaagctctatttaacattctccaag 347 || |||||||| |||||||| || |||||| || |||||||||||||| |||||||| Sbjct: 138570 atttgcaagcaacctccttcagatgcaaactaccagaagctctatttaaccttctccaaa 138511 Query: 348 ccacggaagacagtgcatcttcctgtacctaagctcactttcaaggatctggngttttac 407 ||||||| | || ||| ||||||||||| |||||||| ||| ||||||| | ||||||| Sbjct: 138510 ccacggacgccacagcaccttcctgtaccaaagctcacattcgaggatcttgtgttttac 138451 Query: 408 attgacatgtggcttgagggatcattgatcttctctcaagcagtttcaggctgcat 463 ||||||||||||||||| |||||| | |||||||||||||| |||||||||||||| Sbjct: 138450 attgacatgtggcttgacggatcactcatcttctctcaagctgtttcaggctgcat 138395
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 291 bits (147), Expect = 1e-75 Identities = 258/296 (87%) Strand = Plus / Plus Query: 168 gttttccctctactggatggtaaagacttggtcttttgcatgcttgtatgccgccaatgg 227 ||||||||||||||||||||| ||||| | |||||||||||||||||||| || |||||| Sbjct: 17425053 gttttccctctactggatggtcaagacctagtcttttgcatgcttgtatgtcgtcaatgg 17425112 Query: 228 tgngaaattgcaaaggatgattacttctggaaatgcatctgctcacggaaatggccttcc 287 | ||||||||||||||||| ||||||||||||||||| || | |||| ||||||||| Sbjct: 17425113 cgagaaattgcaaaggatgactacttctggaaatgcatatgtgcgaggaagtggccttcc 17425172 Query: 288 atctgcaagcagcctccttctgacacaaacttncaaaagctctatttaacattctccaag 347 || |||||||| |||||||| || |||||| || |||||||||||||| |||||||| Sbjct: 17425173 atttgcaagcaacctccttcagatgcaaactaccagaagctctatttaaccttctccaaa 17425232 Query: 348 ccacggaagacagtgcatcttcctgtacctaagctcactttcaaggatctggngttttac 407 ||||||| | || ||| ||||||||||| |||||||| ||| ||||||| | ||||||| Sbjct: 17425233 ccacggacgccacagcaccttcctgtaccaaagctcacattcgaggatcttgtgttttac 17425292 Query: 408 attgacatgtggcttgagggatcattgatcttctctcaagcagtttcaggctgcat 463 ||||||||||||||||| |||||| | |||||||||||||| |||||||||||||| Sbjct: 17425293 attgacatgtggcttgacggatcactcatcttctctcaagctgtttcaggctgcat 17425348
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 291 bits (147), Expect = 1e-75 Identities = 258/296 (87%) Strand = Plus / Plus Query: 168 gttttccctctactggatggtaaagacttggtcttttgcatgcttgtatgccgccaatgg 227 ||||||||||||||||||||| ||||| | |||||||||||||||||||| || |||||| Sbjct: 17418594 gttttccctctactggatggtcaagacctagtcttttgcatgcttgtatgtcgtcaatgg 17418653 Query: 228 tgngaaattgcaaaggatgattacttctggaaatgcatctgctcacggaaatggccttcc 287 | ||||||||||||||||| ||||||||||||||||| || | |||| ||||||||| Sbjct: 17418654 cgagaaattgcaaaggatgactacttctggaaatgcatatgtgcgaggaagtggccttcc 17418713 Query: 288 atctgcaagcagcctccttctgacacaaacttncaaaagctctatttaacattctccaag 347 || |||||||| |||||||| || |||||| || |||||||||||||| |||||||| Sbjct: 17418714 atttgcaagcaacctccttcagatgcaaactaccagaagctctatttaaccttctccaaa 17418773 Query: 348 ccacggaagacagtgcatcttcctgtacctaagctcactttcaaggatctggngttttac 407 ||||||| | || ||| ||||||||||| |||||||| ||| ||||||| | ||||||| Sbjct: 17418774 ccacggacgccacagcaccttcctgtaccaaagctcacattcgaggatcttgtgttttac 17418833 Query: 408 attgacatgtggcttgagggatcattgatcttctctcaagcagtttcaggctgcat 463 ||||||||||||||||| |||||| | |||||||||||||| |||||||||||||| Sbjct: 17418834 attgacatgtggcttgacggatcactcatcttctctcaagctgtttcaggctgcat 17418889
>dbj|AK069736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031J08, full insert sequence Length = 1224 Score = 291 bits (147), Expect = 1e-75 Identities = 258/296 (87%) Strand = Plus / Plus Query: 168 gttttccctctactggatggtaaagacttggtcttttgcatgcttgtatgccgccaatgg 227 ||||||||||||||||||||| ||||| | |||||||||||||||||||| || |||||| Sbjct: 366 gttttccctctactggatggtcaagacctagtcttttgcatgcttgtatgtcgtcaatgg 425 Query: 228 tgngaaattgcaaaggatgattacttctggaaatgcatctgctcacggaaatggccttcc 287 | ||||||||||||||||| ||||||||||||||||| || | |||| ||||||||| Sbjct: 426 cgagaaattgcaaaggatgactacttctggaaatgcatatgtgcgaggaagtggccttcc 485 Query: 288 atctgcaagcagcctccttctgacacaaacttncaaaagctctatttaacattctccaag 347 || |||||||| |||||||| || |||||| || |||||||||||||| |||||||| Sbjct: 486 atttgcaagcaacctccttcagatgcaaactaccagaagctctatttaaccttctccaaa 545 Query: 348 ccacggaagacagtgcatcttcctgtacctaagctcactttcaaggatctggngttttac 407 ||||||| | || ||| ||||||||||| |||||||| ||| ||||||| | ||||||| Sbjct: 546 ccacggacgccacagcaccttcctgtaccaaagctcacattcgaggatcttgtgttttac 605 Query: 408 attgacatgtggcttgagggatcattgatcttctctcaagcagtttcaggctgcat 463 ||||||||||||||||| |||||| | |||||||||||||| |||||||||||||| Sbjct: 606 attgacatgtggcttgacggatcactcatcttctctcaagctgtttcaggctgcat 661
>gb|CP000040.1| Bacillus cereus E33L plasmid pE33L466, complete sequence Length = 466370 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 254 ctggaaatgcatctgctcacggaa 277 |||||||||||||||||||||||| Sbjct: 249019 ctggaaatgcatctgctcacggaa 249042
>emb|AL020994.1|HS929C8 Human DNA sequence from clone CTA-929C8 on chromosome 22q12.1-12.3, complete sequence Length = 139190 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 cagtttcaggctgcattctta 468 ||||||||||||||||||||| Sbjct: 60629 cagtttcaggctgcattctta 60649
>emb|CR936633.1| Homo sapiens mRNA; cDNA DKFZp781F1219 (from clone DKFZp781F1219) Length = 5069 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 cagtttcaggctgcattctta 468 ||||||||||||||||||||| Sbjct: 2603 cagtttcaggctgcattctta 2623
>emb|CR627208.1| Homo sapiens mRNA; cDNA DKFZp781G1319 (from clone DKFZp781G1319) Length = 5069 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 cagtttcaggctgcattctta 468 ||||||||||||||||||||| Sbjct: 2603 cagtttcaggctgcattctta 2623
>gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, complete sequence Length = 157871 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 tgagaatggaaaatggatttc 147 ||||||||||||||||||||| Sbjct: 78556 tgagaatggaaaatggatttc 78576
>dbj|AP003305.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-667E8, complete sequence Length = 134764 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 180 ctggatggtaaagacttggtctttt 204 ||||||||||||| ||||||||||| Sbjct: 77823 ctggatggtaaagtcttggtctttt 77799
>gb|DQ235189.1| Solanum tuberosum clone 164F06 F-box family protein-like mRNA, complete cds Length = 1161 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 gatgattacttctggaaatg 262 |||||||||||||||||||| Sbjct: 285 gatgattacttctggaaatg 304
>gb|AY018040.1| Oryza sativa microsatellite MRG0365 containing (AG)X26, genomic sequence Length = 252 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tgcatcttcctgtacctaag 380 |||||||||||||||||||| Sbjct: 36 tgcatcttcctgtacctaag 17
>emb|AL359012.7| Human DNA sequence from clone RP11-339I10 on chromosome 13 Contains ESTs, STSs and GSSs, complete sequence Length = 176446 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 acttctggaaatgcatctgc 269 |||||||||||||||||||| Sbjct: 48531 acttctggaaatgcatctgc 48550
>gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163461 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gcccattctttcatcctctc 20 |||||||||||||||||||| Sbjct: 33634 gcccattctttcatcctctc 33615
>gb|AC008120.17| Homo sapiens 3q27 BAC RP11-477P16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138779 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ggtgaggttctcaaggctgt 169 |||||||||||||||||||| Sbjct: 78996 ggtgaggttctcaaggctgt 79015
>gb|AC106786.2| Homo sapiens chromosome 5 clone RP11-359P5, complete sequence Length = 107238 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tgaggttctcaaggctgttt 171 |||||||||||||||||||| Sbjct: 99610 tgaggttctcaaggctgttt 99591
>dbj|AK085403.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630022K18 product:unclassifiable, full insert sequence Length = 670 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gcccattctttcatcctctc 20 |||||||||||||||||||| Sbjct: 178 gcccattctttcatcctctc 197
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tgcatcttcctgtacctaag 380 |||||||||||||||||||| Sbjct: 23737242 tgcatcttcctgtacctaag 23737261
>gb|AC008548.6| Homo sapiens chromosome 5 clone CTC-505D13, complete sequence Length = 116730 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tgaggttctcaaggctgttt 171 |||||||||||||||||||| Sbjct: 38733 tgaggttctcaaggctgttt 38714
>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1060_D03 Length = 102178 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tgcatcttcctgtacctaag 380 |||||||||||||||||||| Sbjct: 81856 tgcatcttcctgtacctaag 81875
>gb|AC153584.5| Mus musculus 6 BAC RP23-27C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208921 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gcccattctttcatcctctc 20 |||||||||||||||||||| Sbjct: 11545 gcccattctttcatcctctc 11564
>gb|DQ252505.1| Solanum tuberosum clone 085A04 F-box family protein-like mRNA, complete cds Length = 1299 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 234 attgcaaaggatgattacttctggaaat 261 |||||| | ||||||||||||||||||| Sbjct: 316 attgcacaagatgattacttctggaaat 343 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,896,364 Number of Sequences: 3902068 Number of extensions: 3896364 Number of successful extensions: 71191 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71110 Number of HSP's gapped (non-prelim): 76 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
