>CI039_HUMAN (Q9NXG0) Protein C9orf39|
          Length = 1084

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = -2

Query: 426 TQLQDREIIIQRGNLKRNLTISIELSAKTPTEPQQNPDCLQQLNCRPSLLQNSQAVMSPY 247
           T LQD+ +  ++ N K    +     A  P   + +PD   Q+  RPSL      ++S  
Sbjct: 85  TNLQDQLLQKEQENAKLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLETLMVSQK 144

Query: 246 SQLNRQKNQQPFATAKLA 193
           S++   + +   A  KL+
Sbjct: 145 SEIEYLQEKLKIANEKLS 162

>DPOG_NEUCR (Q9Y767) DNA polymerase gamma (EC 2.7.7.7) (Mitochondrial DNA|
            polymerase catalytic subunit)
          Length = 1305

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/72 (27%), Positives = 31/72 (43%)
 Frame = +2

Query: 29   SPKLLPTVDNAENDSGNAQESQKPEVTGEEKSAAEDNVVAAAVTGVAPKDANPTAASLAV 208
            SP     VD A+  +   + + K E  GE   + +D V+AA +  V+       A+  A 
Sbjct: 1232 SPSSSSNVD-AKKTTSKTKPTHKKETEGEPFPSLDDPVIAARLEAVSKTSPGTRASVAAK 1290

Query: 209  ANGC*FFCLLSC 244
             +    FC  SC
Sbjct: 1291 LDALASFCHASC 1302

>RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore complex|
           protein Nup358) (Nucleoporin Nup358) (358 kDa
           nucleoporin) (P270) (Fragment)
          Length = 1085

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +2

Query: 11  QLKKITSPKLLPTV-----DNAENDSGNAQESQKPEVTGEEKSAAEDNVVAAAVTGVAPK 175
           +L K  + KL PT       + + D+GNA++ Q      +E   ++D  +A++  G+   
Sbjct: 588 ELAKADTLKLPPTFFCGICSDTDEDNGNAEDFQSELQKVQEAQKSQDENIASSADGMCTD 647

Query: 176 DANPTAASL 202
           D   T   L
Sbjct: 648 DTKVTVPFL 656


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,307,511
Number of Sequences: 219361
Number of extensions: 1022942
Number of successful extensions: 4247
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4244
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)