>HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine zipper protein|
            ATHB-10) (HD-ZIP protein ATHB-10)
          Length = 745

 Score =  107 bits (266), Expect = 4e-23
 Identities = 58/135 (42%), Positives = 86/135 (63%), Gaps = 9/135 (6%)
 Frame = +1

Query: 4    RQNGNSVSLLRASAMSANQSSMLILQETCTDASGSIVVYAPVDIPAMQLVMNGGDSTYVA 183
            +  GNSV++     + + + S+ +LQ++ T++  S+VVYAPVDI   QLV+ G D + + 
Sbjct: 610  QDRGNSVAI---QTVKSREKSIWVLQDSSTNSYESVVVYAPVDINTTQLVLAGHDPSNIQ 666

Query: 184  LLPSGFAILPDG---------PSIGSEHKTGGSLLTVAFQILVNSQPTAKLTVESVETVN 336
            +LPSGF+I+PDG          +    +  GGSLLT+A Q L+N  P AKL +ESVE+V 
Sbjct: 667  ILPSGFSIIPDGVESRPLVITSTQDDRNSQGGSLLTLALQTLINPSPAAKLNMESVESVT 726

Query: 337  NLISCTIKKIKTALQ 381
            NL+S T+  IK +LQ
Sbjct: 727  NLVSVTLHNIKRSLQ 741

>FWA_ARATH (Q9FVI6) Homeobox protein FWA|
          Length = 686

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 61/132 (46%), Positives = 85/132 (64%), Gaps = 3/132 (2%)
 Frame = +1

Query: 4   RQNGNSVSLLRASAMSANQSSMLILQETCTDASGSIVVYAPVDIPAMQLVMNGGDSTYVA 183
           +++GN +SLL+        + ML+LQE   DASG++VVYAPV+  +++LV  G +S  V 
Sbjct: 561 KRHGNIISLLKIV-----NNGMLVLQEIWNDASGAMVVYAPVETNSIELVKRGENSDSVK 615

Query: 184 LLPSGFAILPDGPSIGSEHK---TGGSLLTVAFQILVNSQPTAKLTVESVETVNNLISCT 354
            LPSGF+I+PDG + GS H+    GG LLT   QILV   PTA L   +V++V  L++ T
Sbjct: 616 FLPSGFSIVPDGVN-GSYHRGNTGGGCLLTFGLQILVGINPTAALIQGTVKSVETLMAHT 674

Query: 355 IKKIKTALQCAT 390
           I KIK+AL   T
Sbjct: 675 IVKIKSALDLQT 686

>RK4_ODOSI (P49546) Chloroplast 50S ribosomal protein L4|
          Length = 215

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 19/87 (21%), Positives = 34/87 (39%)
 Frame = -2

Query: 309 ELGGGLAVHKNLECHRQQRAAGLVLAANARTVRQNGKSRWQQSNIGGVPAVHDQLHCWDV 130
           E  G   +HK++  H+  +  G +       VR  G+  W+Q   G   A   +   W  
Sbjct: 31  EKSGNYLIHKDILRHQSSQRQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKG 90

Query: 129 HRSVYNNRPRCISTRFLKDQHAALVGT 49
              ++  +PR I  +  K +    + T
Sbjct: 91  GGVIFGPKPRKIILKLNKKERKLALQT 117

>IGBP1_MOUSE (Q61249) Immunoglobulin-binding protein 1 (CD79a-binding protein 1)|
           (Alpha4 phosphoprotein) (Lymphocyte signal transduction
           molecule alpha 4) (p52)
          Length = 340

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 426 VIPKAKSILTLRRCALQRRLDLLDSAGDKIVHGLDRFHC 310
           ++P  +  LT+++    +RLD L  A +  VH L + HC
Sbjct: 81  MVPALQGALTMKQVNPSKRLDHLQRAREHFVHFLTQCHC 119

>FAM5A_HUMAN (O60477) Protein FAM5A precursor (Deleted in bladder cancer 1|
           protein)
          Length = 761

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 432 PPVIPKAKSILTLRRCALQRRLDLLDSAGDKIVHGLDRFHCEL 304
           PPV P  K  L L  C L+ RL L +S   ++ H LD ++ E+
Sbjct: 708 PPVAP-GKPQLDLFSCMLKHRLKLTNSEIIRVNHALDLYNTEI 749

>FAM5A_CHICK (Q7ZZR3) Protein FAM5A precursor (BMP/retinoic acid-inducible|
           neural-specific protein 1)
          Length = 761

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 432 PPVIPKAKSILTLRRCALQRRLDLLDSAGDKIVHGLDRFHCEL 304
           PPV P  K  L L  C L+ RL L +S   ++ H LD ++ E+
Sbjct: 708 PPVAP-GKPQLDLFSCMLKHRLKLTNSEIIRVNHALDLYNTEI 749

>FAM5A_BOVIN (Q5E9L2) Protein FAM5A precursor|
          Length = 761

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 432 PPVIPKAKSILTLRRCALQRRLDLLDSAGDKIVHGLDRFHCEL 304
           PPV P  K  L L  C L+ RL L +S   ++ H LD ++ E+
Sbjct: 708 PPVAP-GKPQLDLFSCMLKHRLKLTNSEIIRVNHALDLYNTEI 749

>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7|
          Length = 920

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -1

Query: 553 AESIPEPPPLLCAKDLSKRSLSPSKGFFFIARFVLDSDSAPAGHPQGKIHPNTQAL 386
           AE  P PPP+    D+    L+  K     +   L S  APAGH     +P T  L
Sbjct: 772 AEFTPGPPPISYQSDIPSSLLTSEK-----STACLPSQMAPAGHLDPTHNPGTPGL 822

>FAM5A_RAT (Q925T8) Protein FAM5A precursor (Deleted in bladder cancer 1|
           protein homolog) (BMP/retinoic acid-inducible
           neural-specific protein 1)
          Length = 760

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 432 PPVIPKAKSILTLRRCALQRRLDLLDSAGDKIVHGLDRFHCEL 304
           PPV P  K  L L  C L+ RL L +S   ++ H LD ++ E+
Sbjct: 707 PPVAP-GKPQLDLFSCMLKHRLKLTNSEIIRVNHALDLYNTEI 748

>FAM5A_MOUSE (Q920P3) Protein FAM5A precursor (Deleted in bladder cancer 1|
           protein homolog) (BMP/retinoic acid-inducible
           neural-specific protein 1)
          Length = 760

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -2

Query: 432 PPVIPKAKSILTLRRCALQRRLDLLDSAGDKIVHGLDRFHCEL 304
           PPV P  K  L L  C L+ RL L +S   ++ H LD ++ E+
Sbjct: 707 PPVAP-GKPQLDLFSCMLKHRLKLTNSEIIRVNHALDLYNTEI 748

>CNG_DROME (Q24278) Cyclic nucleotide-gated cation channel (CNG channel)|
          Length = 665

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 23/95 (24%), Positives = 39/95 (41%)
 Frame = -2

Query: 576 GNTAGRKRPSQYPNHHHCSVLRTCQKDPYHLAKDFFSLRGSFLTQTQRPPVIPKAKSILT 397
           GN  G +R +   +  +  +    ++D +    D+                 P+A+S LT
Sbjct: 504 GNRTGNRRTANVRSLGYSDLFCLAKRDLWETLSDY-----------------PEARSTLT 546

Query: 396 LRRCALQRRLDLLDSAGDKIVHGLDRFHCELGGGL 292
            R C L R+  LLD   ++I     R H  + GG+
Sbjct: 547 QRGCQLLRKDGLLD---EQIFADSQRVHDSIEGGI 578

>IGBP1_RAT (O08836) Immunoglobulin-binding protein 1 (CD79a-binding protein 1)|
           (Alpha4 phosphoprotein)
          Length = 340

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 426 VIPKAKSILTLRRCALQRRLDLLDSAGDKIVHGLDRFHC 310
           ++P  +  LT+++    +RLD L  A +  +H L + HC
Sbjct: 81  MVPALQGALTMKQVNPSKRLDHLQRAREHFIHFLTQCHC 119


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,833,794
Number of Sequences: 219361
Number of extensions: 2334026
Number of successful extensions: 7631
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7618
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)