ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags25j16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066M01, full insert sequence Length = 3643 Score = 262 bits (132), Expect = 6e-67 Identities = 262/306 (85%) Strand = Plus / Plus Query: 4 aacactacatgatgtgttacatgaaagagaggacttagatagtgcactatcttggatcgc 63 |||||| |||||||| |||||||| | ||||| || ||| |||||||||| |||| || Sbjct: 61 aacactgcatgatgtactacatgaaggggaggaattggatggtgcactatcatggaatgc 120 Query: 64 ccgtctccaggttgctcttggttcagcaaaagccttagagtatctccatgacacctgtga 123 || ||||| |||||||||||| ||||||| |||||||| ||||| ||||| | |||||| Sbjct: 121 tcgcctccaagttgctcttggtgcagcaaaggccttagactatctacatgagagctgtga 180 Query: 124 gcctccagtagtgcatcagaattttgaaccatcaaatgtgcttcttgataatagattctc 183 |||||||||||||| ||||||||||| ||| | |||||||| |||| |||| ||||||| Sbjct: 181 acctccagtagtgcaccagaattttgagccagccaatgtgctccttggtaatggattctc 240 Query: 184 agtacgtgttgctgaatgtggactgtctgtattgacgttgtcaagttctgttacacagtt 243 ||||||||| ||||||||||||||| | | ||||||| ||||| |||||||||||||||| Sbjct: 241 agtacgtgtcgctgaatgtggactggcagaattgacgctgtcaggttctgttacacagtt 300 Query: 244 gtctggtcgcatgcgggcactactaaattatgaggcacctgaaatccaggaatctgnnac 303 ||| ||||||||| ||||||| || |||||||| || ||||||||||| ||| ||| || Sbjct: 301 gtcaggtcgcatgagggcactgctgaattatgaagctcctgaaatccatgaagctgggac 360 Query: 304 ttttac 309 |||||| Sbjct: 361 ttttac 366
>dbj|AK063386.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G09, full insert sequence Length = 2760 Score = 262 bits (132), Expect = 6e-67 Identities = 262/306 (85%) Strand = Plus / Plus Query: 4 aacactacatgatgtgttacatgaaagagaggacttagatagtgcactatcttggatcgc 63 |||||| |||||||| |||||||| | ||||| || ||| |||||||||| |||| || Sbjct: 1807 aacactgcatgatgtactacatgaaggggaggaattggatggtgcactatcatggaatgc 1866 Query: 64 ccgtctccaggttgctcttggttcagcaaaagccttagagtatctccatgacacctgtga 123 || ||||| |||||||||||| ||||||| |||||||| ||||| ||||| | |||||| Sbjct: 1867 tcgcctccaagttgctcttggtgcagcaaaggccttagactatctacatgagagctgtga 1926 Query: 124 gcctccagtagtgcatcagaattttgaaccatcaaatgtgcttcttgataatagattctc 183 |||||||||||||| ||||||||||| ||| | |||||||| |||| |||| ||||||| Sbjct: 1927 acctccagtagtgcaccagaattttgagccagccaatgtgctccttggtaatggattctc 1986 Query: 184 agtacgtgttgctgaatgtggactgtctgtattgacgttgtcaagttctgttacacagtt 243 ||||||||| ||||||||||||||| | | ||||||| ||||| |||||||||||||||| Sbjct: 1987 agtacgtgtcgctgaatgtggactggcagaattgacgctgtcaggttctgttacacagtt 2046 Query: 244 gtctggtcgcatgcgggcactactaaattatgaggcacctgaaatccaggaatctgnnac 303 ||| ||||||||| ||||||| || |||||||| || ||||||||||| ||| ||| || Sbjct: 2047 gtcaggtcgcatgagggcactgctgaattatgaagctcctgaaatccatgaagctgggac 2106 Query: 304 ttttac 309 |||||| Sbjct: 2107 ttttac 2112
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 139 bits (70), Expect = 6e-30 Identities = 121/138 (87%) Strand = Plus / Minus Query: 104 tatctccatgacacctgtgagcctccagtagtgcatcagaattttgaaccatcaaatgtg 163 ||||| ||||| | |||||| |||||||||||||| ||||||||||| ||| | |||||| Sbjct: 4170455 tatctacatgagagctgtgaacctccagtagtgcaccagaattttgagccagccaatgtg 4170396 Query: 164 cttcttgataatagattctcagtacgtgttgctgaatgtggactgtctgtattgacgttg 223 || |||| |||| |||||||||||||||| ||||||||||||||| | | ||||||| || Sbjct: 4170395 ctccttggtaatggattctcagtacgtgtcgctgaatgtggactggcagaattgacgctg 4170336 Query: 224 tcaagttctgttacacag 241 ||| |||||||||||||| Sbjct: 4170335 tcaggttctgttacacag 4170318 Score = 75.8 bits (38), Expect = 8e-11 Identities = 86/102 (84%) Strand = Plus / Minus Query: 4 aacactacatgatgtgttacatgaaagagaggacttagatagtgcactatcttggatcgc 63 |||||| |||||||| |||||||| | ||||| || ||| |||||||||| |||| || Sbjct: 4170660 aacactgcatgatgtactacatgaaggggaggaattggatggtgcactatcatggaatgc 4170601 Query: 64 ccgtctccaggttgctcttggttcagcaaaagccttagagta 105 || ||||| |||||||||||| ||||||| ||||||||||| Sbjct: 4170600 tcgcctccaagttgctcttggtgcagcaaaggccttagagta 4170559 Score = 65.9 bits (33), Expect = 7e-08 Identities = 61/71 (85%) Strand = Plus / Minus Query: 239 cagttgtctggtcgcatgcgggcactactaaattatgaggcacctgaaatccaggaatct 298 |||||||| ||||||||| ||||||| || |||||||| || ||||||||||| ||| || Sbjct: 4169093 cagttgtcaggtcgcatgagggcactgctgaattatgaagctcctgaaatccatgaagct 4169034 Query: 299 gnnacttttac 309 | |||||||| Sbjct: 4169033 gggacttttac 4169023
>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1077_E05 Length = 116305 Score = 139 bits (70), Expect = 6e-30 Identities = 121/138 (87%) Strand = Plus / Minus Query: 104 tatctccatgacacctgtgagcctccagtagtgcatcagaattttgaaccatcaaatgtg 163 ||||| ||||| | |||||| |||||||||||||| ||||||||||| ||| | |||||| Sbjct: 80469 tatctacatgagagctgtgaacctccagtagtgcaccagaattttgagccagccaatgtg 80410 Query: 164 cttcttgataatagattctcagtacgtgttgctgaatgtggactgtctgtattgacgttg 223 || |||| |||| |||||||||||||||| ||||||||||||||| | | ||||||| || Sbjct: 80409 ctccttggtaatggattctcagtacgtgtcgctgaatgtggactggcagaattgacgctg 80350 Query: 224 tcaagttctgttacacag 241 ||| |||||||||||||| Sbjct: 80349 tcaggttctgttacacag 80332 Score = 75.8 bits (38), Expect = 8e-11 Identities = 86/102 (84%) Strand = Plus / Minus Query: 4 aacactacatgatgtgttacatgaaagagaggacttagatagtgcactatcttggatcgc 63 |||||| |||||||| |||||||| | ||||| || ||| |||||||||| |||| || Sbjct: 80674 aacactgcatgatgtactacatgaaggggaggaattggatggtgcactatcatggaatgc 80615 Query: 64 ccgtctccaggttgctcttggttcagcaaaagccttagagta 105 || ||||| |||||||||||| ||||||| ||||||||||| Sbjct: 80614 tcgcctccaagttgctcttggtgcagcaaaggccttagagta 80573 Score = 65.9 bits (33), Expect = 7e-08 Identities = 61/71 (85%) Strand = Plus / Minus Query: 239 cagttgtctggtcgcatgcgggcactactaaattatgaggcacctgaaatccaggaatct 298 |||||||| ||||||||| ||||||| || |||||||| || ||||||||||| ||| || Sbjct: 79107 cagttgtcaggtcgcatgagggcactgctgaattatgaagctcctgaaatccatgaagct 79048 Query: 299 gnnacttttac 309 | |||||||| Sbjct: 79047 gggacttttac 79037
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 81.8 bits (41), Expect = 1e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 123 agcctccagtagtgcatcagaattttgaaccatcaaatgtgcttcttgataatagattct 182 |||||||| | ||||||||||| |||||||| | ||||| || |||||||||| ||| | Sbjct: 26847800 agcctccaattgtgcatcagaactttgaaccggctaatgtactccttgataataaatttt 26847859 Query: 183 cagtacgtgttgctgaatgtggact 207 |||| |||||||||||||||||||| Sbjct: 26847860 cagtgcgtgttgctgaatgtggact 26847884 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 68 ctccaggttgctcttggttcagcaaaagccttagagt 104 |||||||||||||||||||||| ||| |||||||||| Sbjct: 26847663 ctccaggttgctcttggttcaggaaaggccttagagt 26847699
>dbj|AP005769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0051O02 Length = 169532 Score = 81.8 bits (41), Expect = 1e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 123 agcctccagtagtgcatcagaattttgaaccatcaaatgtgcttcttgataatagattct 182 |||||||| | ||||||||||| |||||||| | ||||| || |||||||||| ||| | Sbjct: 102426 agcctccaattgtgcatcagaactttgaaccggctaatgtactccttgataataaatttt 102485 Query: 183 cagtacgtgttgctgaatgtggact 207 |||| |||||||||||||||||||| Sbjct: 102486 cagtgcgtgttgctgaatgtggact 102510 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 68 ctccaggttgctcttggttcagcaaaagccttagagt 104 |||||||||||||||||||||| ||| |||||||||| Sbjct: 102289 ctccaggttgctcttggttcaggaaaggccttagagt 102325
>dbj|AK070086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040E15, full insert sequence Length = 2100 Score = 73.8 bits (37), Expect = 3e-10 Identities = 88/105 (83%) Strand = Plus / Plus Query: 4 aacactacatgatgtgttacatgaaagagaggacttagatagtgcactatcttggatcgc 63 |||||| |||||||| |||||||| | ||||| || ||| |||||||||| |||| || Sbjct: 1996 aacactgcatgatgtactacatgaaggggaggaattggatggtgcactatcatggaatgc 2055 Query: 64 ccgtctccaggttgctcttggttcagcaaaagccttagagtatct 108 || ||||| |||||||||||| ||||||| |||||||| ||||| Sbjct: 2056 tcgcctccaagttgctcttggtgcagcaaaggccttagactatct 2100
>gb|AY112207.1| Zea mays CL6312_1 mRNA sequence Length = 832 Score = 71.9 bits (36), Expect = 1e-09 Identities = 112/138 (81%) Strand = Plus / Plus Query: 173 aatagattctcagtacgtgttgctgaatgtggactgtctgtattgacgttgtcaagttct 232 ||||||| |||||| ||||||||||||||||| ||| | ||||| | ||| ||||| Sbjct: 22 aatagatgctcagtgcgtgttgctgaatgtgggctggcacaattgatggcgtctggttct 81 Query: 233 gttacacagttgtctggtcgcatgcgggcactactaaattatgaggcacctgaaatccag 292 ||||||||| | || || || ||| | || ||||| |||||||| |||||||||||||| Sbjct: 82 gttacacagctatcaggccgtatgagagctctactcaattatgaagcacctgaaatccat 141 Query: 293 gaatctgnnacttttact 310 ||||||| |||||||| Sbjct: 142 gaatctgagccttttact 159
>gb|AC159330.9| Mus musculus 10 BAC RP23-91L18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224664 Score = 46.1 bits (23), Expect = 0.068 Identities = 23/23 (100%) Strand = Plus / Minus Query: 11 catgatgtgttacatgaaagaga 33 ||||||||||||||||||||||| Sbjct: 80217 catgatgtgttacatgaaagaga 80195
>gb|AC112945.9| Mus musculus chromosome 15, clone RP23-382O21, complete sequence Length = 189335 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctccaggttgctcttggtt 86 |||||||||||||||||||| Sbjct: 119665 tctccaggttgctcttggtt 119646
>ref|NM_001017975.1| Homo sapiens HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) (HFM1), mRNA Length = 2020 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 tatgaggcacctgaaatccaggaa 295 |||||||||||||||| ||||||| Sbjct: 1708 tatgaggcacctgaaacccaggaa 1685
>emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on chromosome 13, complete sequence Length = 141895 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 aattatgaggcacctgaaat 288 |||||||||||||||||||| Sbjct: 43129 aattatgaggcacctgaaat 43110
>dbj|AK124229.1| Homo sapiens cDNA FLJ42235 fis, clone THYMU3000504 Length = 3117 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 tgtgcttcttgataatagattctc 183 ||||||||||||| |||||||||| Sbjct: 875 tgtgcttcttgattatagattctc 898
>dbj|AK096330.1| Homo sapiens cDNA FLJ39011 fis, clone NT2RI2027323, weakly similar to HELICASE YGR271W Length = 2020 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 tatgaggcacctgaaatccaggaa 295 |||||||||||||||| ||||||| Sbjct: 1708 tatgaggcacctgaaacccaggaa 1685
>gb|AC061963.13| Mus musculus chromosome 9, clone RP23-23P9, complete sequence Length = 201757 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tctccaggttgctcttggtt 86 |||||||||||||||||||| Sbjct: 84889 tctccaggttgctcttggtt 84870
>gb|AC106041.3| Homo sapiens BAC clone RP11-3M2 from 4, complete sequence Length = 22638 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 atctccatgacacctgtgag 124 |||||||||||||||||||| Sbjct: 19149 atctccatgacacctgtgag 19168
>gb|AC079121.5| Homo sapiens BAC clone RP11-368O9 from 2, complete sequence Length = 79228 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 tgtgcttcttgataatagattctc 183 ||||||||||||| |||||||||| Sbjct: 30167 tgtgcttcttgattatagattctc 30144
>gb|AC098691.2| Homo sapiens chromosome 1 clone RP11-509K22, complete sequence Length = 166885 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 272 tatgaggcacctgaaatccaggaa 295 |||||||||||||||| ||||||| Sbjct: 43134 tatgaggcacctgaaacccaggaa 43157
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 cgcccgtctccaggttgctc 80 |||||||||||||||||||| Sbjct: 275179 cgcccgtctccaggttgctc 275198
>gb|AC166048.3| Mus musculus BAC clone RP24-266C15 from chromosome 9, complete sequence Length = 144816 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 tctccaggttgctcttggtt 86 |||||||||||||||||||| Sbjct: 130831 tctccaggttgctcttggtt 130850 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,274,735 Number of Sequences: 3902068 Number of extensions: 2274735 Number of successful extensions: 38317 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38265 Number of HSP's gapped (non-prelim): 52 length of query: 318 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 296 effective length of database: 17,147,199,772 effective search space: 5075571132512 effective search space used: 5075571132512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
