| Clone Name | bags25j10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF104108.1| Triticum aestivum small heat shock protein Hsp23.6 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 988 Score = 299 bits (151), Expect = 4e-78 Identities = 166/171 (97%) Strand = Plus / Plus Query: 291 gctggggcgtcgcggctcggacgctgggtgaccaaggaggacgacggcgcggtgtacctc 350 ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct: 383 gctggcgcgtcgcggctcggacgctgggtggccaaggaggacgacgacgcggtgtacctc 442 Query: 351 aaggtgccgatgccggggctgaccaaggagcacgtccaggtgcgcgcggacaagaacatc 410 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 443 aaggtgccgatgccggggctgaccaaggagcacgtggaggtgcgcgcggacaagaacatc 502 Query: 411 ctggtgatcaagggcgagggcgagaagcagccctgggacggcgacgacgac 461 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 ctggtgatcaagggcgagggcgagaagcagccctgggacggcgacgacgac 553 Score = 107 bits (54), Expect = 3e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 70 cgccggccagcttcctcaagtccggcgctcccgtggccttctgccccctcaacaccaccg 129 ||||||||||| ||||||||||||| ||||||||||||||| || | || || || ||| Sbjct: 105 cgccggccagcctcctcaagtccggtgctcccgtggccttccgctcggtccactcccccg 164 Query: 130 ccgtcaccgccgaccaccgcccgtacaacaccctggtcaaggaggccatccgct 183 |||||||||||| || ||||||||||||||||| || |||||||| || ||||| Sbjct: 165 ccgtcaccgccgcccgccgcccgtacaacacccaggccaaggaggtcagccgct 218 Score = 93.7 bits (47), Expect = 5e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 201 tacagcggccgccacctcgtcctccctagcttcttctcgcaggacgtcctcgacccgctc 260 |||||||||||| |||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct: 239 tacagcggccgcgacctcgtcatccccagcttcttctcgcaggacgtgatcgacccgctc 298 Query: 261 ggcgcgc 267 ||||||| Sbjct: 299 ggcgcgc 305 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 37 ccatggcttccgccgtcgcttgcaaggg 64 |||||||||||||||||| ||||||||| Sbjct: 66 ccatggcttccgccgtcgattgcaaggg 93
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 101 bits (51), Expect = 2e-18 Identities = 105/123 (85%) Strand = Plus / Minus Query: 315 tgggtgaccaaggaggacgacggcgcggtgtacctcaaggtgccgatgccggggctgacc 374 |||||| | ||||||||||||| ||||||| |||||||||| ||||||| |||||| Sbjct: 6163457 tgggtggcgaaggaggacgacgacgcggtgcacctcaaggtctcgatgcccgggctgggg 6163398 Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 ||||||||||| ||||| | ||||| |||||| ||||||||||||||||||||| ||| Sbjct: 6163397 aaggagcacgtgaaggtgtgggcggagcagaacagcctggtgatcaagggcgagggggag 6163338 Query: 435 aag 437 ||| Sbjct: 6163337 aag 6163335
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 101 bits (51), Expect = 2e-18 Identities = 105/123 (85%) Strand = Plus / Minus Query: 315 tgggtgaccaaggaggacgacggcgcggtgtacctcaaggtgccgatgccggggctgacc 374 |||||| | ||||||||||||| ||||||| |||||||||| ||||||| |||||| Sbjct: 77276 tgggtggcgaaggaggacgacgacgcggtgcacctcaaggtctcgatgcccgggctgggg 77217 Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 ||||||||||| ||||| | ||||| |||||| ||||||||||||||||||||| ||| Sbjct: 77216 aaggagcacgtgaaggtgtgggcggagcagaacagcctggtgatcaagggcgagggggag 77157 Query: 435 aag 437 ||| Sbjct: 77156 aag 77154
>dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H01, full insert sequence Length = 1794 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Plus Query: 329 ggacgacggcgcggtgtacctcaaggtgccgatgccggggctgaccaaggagcacgtcca 388 |||||||| ||||||| |||||||||| ||||||| |||||| ||||||||||| | Sbjct: 1194 ggacgacgacgcggtgcacctcaaggtctcgatgcccgggctggggaaggagcacgtgaa 1253 Query: 389 ggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgagaag 437 |||| | ||||| |||||| ||||||||||||||||||||| |||||| Sbjct: 1254 ggtgtgggcggagcagaacagcctggtgatcaagggcgagggggagaag 1302
>gb|BT016320.1| Zea mays clone Contig153 mRNA sequence Length = 979 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 |||||||||||| ||||| | ||||| |||||| ||||||||||||||||||||||||| Sbjct: 498 aaggagcacgtcaaggtgtgggcggagcagaacagcctggtgatcaagggcgagggcgag 557 Query: 435 aag 437 ||| Sbjct: 558 aag 560
>gb|AY758275.1| Zea mays mitochondrial small heat shock protein 22 (hsp22) gene, complete cds; nuclear gene for mitochondrial product Length = 791 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 |||||||||||| ||||| | ||||| |||||| ||||||||||||||||||||||||| Sbjct: 549 aaggagcacgtcaaggtgtgggcggagcagaacagcctggtgatcaagggcgagggcgag 608 Query: 435 aag 437 ||| Sbjct: 609 aag 611
>gb|AY104434.1| Zea mays PCO116068 mRNA sequence Length = 1042 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 |||||||||||| ||||| | ||||| |||||| ||||||||||||||||||||||||| Sbjct: 496 aaggagcacgtcaaggtgtgggcggagcagaacagcctggtgatcaagggcgagggcgag 555 Query: 435 aag 437 ||| Sbjct: 556 aag 558
>gb|AF035460.1|AF035460 Zea mays low molecular weight heat shock protein precursor (hsp22) mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1028 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 |||||||||||| ||||| | ||||| |||||| ||||||||||||||||||||||||| Sbjct: 493 aaggagcacgtcaaggtgtgggcggagcagaacagcctggtgatcaagggcgagggcgag 552 Query: 435 aag 437 ||| Sbjct: 553 aag 555
>gb|AF104107.1| Triticum aestivum small heat shock protein Hsp23.5 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 878 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 360 atgccggggctgaccaaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatc 419 |||||||||||| |||||| ||||| ||||| | ||||| |||||| |||||||||| Sbjct: 429 atgccggggctgggcaaggaacacgtgaaggtgtgggcggagcagaacagcctggtgatc 488 Query: 420 aagggcgagggcgagaag 437 |||||||||||||||||| Sbjct: 489 aagggcgagggcgagaag 506
>gb|AY108320.1| Zea mays PCO111660 mRNA sequence Length = 1002 Score = 60.0 bits (30), Expect = 7e-06 Identities = 87/106 (82%) Strand = Plus / Plus Query: 324 aaggaggacgacggcgcggtgtacctcaaggtgccgatgccggggctgaccaaggagcac 383 |||||||| | || ||||||| | || ||||||||||||||||||||| ||||||||| Sbjct: 425 aaggaggatggcgacgcggtgcagctgaaggtgccgatgccggggctggggaaggagcac 484 Query: 384 gtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagg 429 || || |||| | ||| ||| || ||||||||||||||| |||| Sbjct: 485 gtgaagatgcgggtggagaaggacgccctggtgatcaagggggagg 530
>ref|XM_506984.1| PREDICTED Oryza sativa (japonica cultivar-group), P0471A11.32 mRNA Length = 1443 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 ||||||||||| ||||| | ||||| |||||| ||| ||||||||||||||||| ||| Sbjct: 482 aaggagcacgtgaaggtgtgggcggagcagaacagcctcgtgatcaagggcgagggggag 541 Query: 435 aag 437 ||| Sbjct: 542 aag 544
>ref|XM_467890.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 ||||||||||| ||||| | ||||| |||||| ||| ||||||||||||||||| ||| Sbjct: 488 aaggagcacgtgaaggtgtgggcggagcagaacagcctcgtgatcaagggcgagggggag 547 Query: 435 aag 437 ||| Sbjct: 548 aag 550
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 ||||||||||| ||||| | ||||| |||||| ||| ||||||||||||||||| ||| Sbjct: 31939939 aaggagcacgtgaaggtgtgggcggagcagaacagcctcgtgatcaagggcgagggggag 31939998 Query: 435 aag 437 ||| Sbjct: 31939999 aag 31940001 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 31354037 caccgccgtcaccgccgacc 31354056 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cggccgccacctcgtcctcc 225 |||||||||||||||||||| Sbjct: 21667132 cggccgccacctcgtcctcc 21667113 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 12201349 caccgccgtcaccgccgacc 12201330
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 ||||||||||| ||||| | ||||| |||||| ||| ||||||||||||||||| ||| Sbjct: 100940 aaggagcacgtgaaggtgtgggcggagcagaacagcctcgtgatcaagggcgagggggag 100999 Query: 435 aag 437 ||| Sbjct: 101000 aag 101002
>dbj|AK105464.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A02, full insert sequence Length = 1110 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 ||||||||||| ||||| | ||||| |||||| ||| ||||||||||||||||| ||| Sbjct: 488 aaggagcacgtgaaggtgtgggcggagcagaacagcctcgtgatcaagggcgagggggag 547 Query: 435 aag 437 ||| Sbjct: 548 aag 550
>dbj|AK074003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076P21, full insert sequence Length = 865 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 ||||||||||| ||||| | ||||| |||||| ||| ||||||||||||||||| ||| Sbjct: 483 aaggagcacgtgaaggtgtgggcggagcagaacagcctcgtgatcaagggcgagggggag 542 Query: 435 aag 437 ||| Sbjct: 543 aag 545
>dbj|AK064389.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-F07, full insert sequence Length = 1442 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 375 aaggagcacgtccaggtgcgcgcggacaagaacatcctggtgatcaagggcgagggcgag 434 ||||||||||| ||||| | ||||| |||||| ||| ||||||||||||||||| ||| Sbjct: 482 aaggagcacgtgaaggtgtgggcggagcagaacagcctcgtgatcaagggcgagggggag 541 Query: 435 aag 437 ||| Sbjct: 542 aag 544
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 389 ggtgcgcgcggacaagaacatcc 411 ||||||||||||||||||||||| Sbjct: 930426 ggtgcgcgcggacaagaacatcc 930448
>ref|XM_473452.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1548 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 115 ccctcaacaccaccgccgtcaccgccgacc 144 |||||| ||||||||||||| ||||||||| Sbjct: 1235 ccctcatcaccaccgccgtctccgccgacc 1264
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 115 ccctcaacaccaccgccgtcaccgccgacc 144 |||||| ||||||||||||| ||||||||| Sbjct: 26243 ccctcatcaccaccgccgtctccgccgacc 26214
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 405 aacatcctggtgatcaagggcgagggcgag 434 |||| |||||||| |||||||||||||||| Sbjct: 6905271 aacagcctggtgagcaagggcgagggcgag 6905242
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 115 ccctcaacaccaccgccgtcaccgccgacc 144 |||||| ||||||||||||| ||||||||| Sbjct: 27757575 ccctcatcaccaccgccgtctccgccgacc 27757546 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 acaccaccgccgtcaccgcc 140 |||||||||||||||||||| Sbjct: 25393890 acaccaccgccgtcaccgcc 25393871 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 14013955 caccgccgtcaccgccgacc 14013974
>dbj|AK105088.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B04, full insert sequence Length = 1228 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 115 ccctcaacaccaccgccgtcaccgccgacc 144 |||||| ||||||||||||| ||||||||| Sbjct: 668 ccctcatcaccaccgccgtctccgccgacc 697
>dbj|AK103226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123B14, full insert sequence Length = 2158 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 115 ccctcaacaccaccgccgtcaccgccgacc 144 |||||| ||||||||||||| ||||||||| Sbjct: 1441 ccctcatcaccaccgccgtctccgccgacc 1470
>emb|X61504.1|OCNHE1MR O.cuniculus NHE-1 mRNA for renal Na(+)/H(+) exchanger Length = 3352 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 415 tgatcaagggcgagggcgagaagcagccct 444 |||||||||||| ||||||||||| ||||| Sbjct: 1160 tgatcaagggcgtgggcgagaagccgccct 1189
>emb|X59935.1|OCNAHEXC Rabbit mRNA for Na(+)/H(+) exchanger Length = 3957 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 415 tgatcaagggcgagggcgagaagcagccct 444 |||||||||||| ||||||||||| ||||| Sbjct: 756 tgatcaagggcgtgggcgagaagccgccct 785
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 260 cggcgcgcatcagaccggcctgtcc 284 ||||||| ||||||||||||||||| Sbjct: 2464926 cggcgcgtatcagaccggcctgtcc 2464950
>gb|AC097176.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1576_F01, complete sequence Length = 119525 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 6086 caccgccgtcaccgccgacc 6105
>ref|XM_514921.1| PREDICTED: Pan troglodytes similar to solute carrier family 37 member 1; glycerol-3-phosphate permease (LOC458580), mRNA Length = 720 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 ctcaacaccaccgccgtcaccgccgacc 144 |||| ||||||||||||| ||||||||| Sbjct: 445 ctcatcaccaccgccgtctccgccgacc 472
>ref|XM_531475.1| PREDICTED: Pan troglodytes LOC474017 (LOC474017), mRNA Length = 1942 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 ctcaacaccaccgccgtcaccgccgacc 144 |||| ||||||||||||| ||||||||| Sbjct: 1555 ctcatcaccaccgccgtctccgccgacc 1582
>ref|XM_465192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 1390 caccgccgtcaccgccgacc 1409
>ref|XM_473122.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 615 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 acaccaccgccgtcaccgcc 140 |||||||||||||||||||| Sbjct: 158 acaccaccgccgtcaccgcc 139
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gatcaagggcgagggcgaga 435 |||||||||||||||||||| Sbjct: 58937 gatcaagggcgagggcgaga 58956
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 76814 caccgccgtcaccgccgacc 76833
>gb|AC116601.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0079B05, complete sequence Length = 159382 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 63806 caccgccgtcaccgccgacc 63825
>ref|NM_018964.3| Homo sapiens solute carrier family 37 (glycerol-3-phosphate transporter), member 1 (SLC37A1), mRNA Length = 3098 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 ctcaacaccaccgccgtcaccgccgacc 144 |||| ||||||||||||| ||||||||| Sbjct: 1727 ctcatcaccaccgccgtctccgccgacc 1754
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 79796 caccgccgtcaccgccgacc 79815
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 13395678 caccgccgtcaccgccgacc 13395659
>ref|XM_745941.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g11510) partial mRNA Length = 2307 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cgtggccttctgccccctca 120 |||||||||||||||||||| Sbjct: 484 cgtggccttctgccccctca 503
>gb|AC126224.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0078O24, complete sequence Length = 135980 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 92549 caccgccgtcaccgccgacc 92530
>gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clone KBrH004D11, complete sequence Length = 106476 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cgtcctcgacccgctcggcg 264 |||||||||||||||||||| Sbjct: 49497 cgtcctcgacccgctcggcg 49516
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 1265094 caccgccgtcaccgccgacc 1265113
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tcctcgacccgctcggcgcg 266 |||||||||||||||||||| Sbjct: 130611 tcctcgacccgctcggcgcg 130630
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22, complete sequence Length = 174430 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 127835 caccgccgtcaccgccgacc 127854
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 acaccaccgccgtcaccgcc 140 |||||||||||||||||||| Sbjct: 120448 acaccaccgccgtcaccgcc 120429
>dbj|AP001625.1| Homo sapiens genomic DNA, chromosome 21, clone:KB907F12, MX1-D21S171 region, complete sequence Length = 130626 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 ctcaacaccaccgccgtcaccgccgacc 144 |||| ||||||||||||| ||||||||| Sbjct: 85734 ctcatcaccaccgccgtctccgccgacc 85761
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cgtcctcgacccgctcggcg 264 |||||||||||||||||||| Sbjct: 2631125 cgtcctcgacccgctcggcg 2631144
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 354 gtgccgatgccggggctgaccaaggagc 381 ||||||||||||| ||||||| |||||| Sbjct: 831348 gtgccgatgccggcgctgaccgaggagc 831375
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ccaccgccgtcaccgccgac 143 |||||||||||||||||||| Sbjct: 13625947 ccaccgccgtcaccgccgac 13625928
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gatcaagggcgagggcgaga 435 |||||||||||||||||||| Sbjct: 3464982 gatcaagggcgagggcgaga 3465001
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 1265094 caccgccgtcaccgccgacc 1265113
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 9942179 caccgccgtcaccgccgacc 9942160
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 21957600 caccgccgtcaccgccgacc 21957619 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 11635361 caccgccgtcaccgccgacc 11635380
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 13392453 caccgccgtcaccgccgacc 13392434
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 13385196 caccgccgtcaccgccgacc 13385215
>gb|AF311320.1|AF311320 Homo sapiens glycerol 3-phosphate permease (SLC37A1) mRNA, complete cds Length = 3644 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 ctcaacaccaccgccgtcaccgccgacc 144 |||| ||||||||||||| ||||||||| Sbjct: 2297 ctcatcaccaccgccgtctccgccgacc 2324
>dbj|AP003337.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1111_G12 Length = 112664 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 29749 caccgccgtcaccgccgacc 29768
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 gcgagggcgagaagcagccc 443 |||||||||||||||||||| Sbjct: 4436792 gcgagggcgagaagcagccc 4436773 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 82 tcctcaagtccggcgctcccgtgg 105 |||||||||| ||||||||||||| Sbjct: 624843 tcctcaagtcaggcgctcccgtgg 624820
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cggccgccacctcgtcctcc 225 |||||||||||||||||||| Sbjct: 156082 cggccgccacctcgtcctcc 156063
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03 Length = 119796 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 36611 caccgccgtcaccgccgacc 36630
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 123905 caccgccgtcaccgccgacc 123924
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 348 ctcaaggtgccgatgccggggctg 371 ||||||||||||||||||| |||| Sbjct: 1774584 ctcaaggtgccgatgccggtgctg 1774607
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 cacgtccaggtgcgcgcgga 400 |||||||||||||||||||| Sbjct: 472478 cacgtccaggtgcgcgcgga 472459
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 125554 caccgccgtcaccgccgacc 125573
>dbj|BS000135.1| Pan troglodytes chromosome 22 clone:RP43-114M01, map 22, complete sequences Length = 73133 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 ctcaacaccaccgccgtcaccgccgacc 144 |||| ||||||||||||| ||||||||| Sbjct: 15868 ctcatcaccaccgccgtctccgccgacc 15895
>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0025F02 Length = 156545 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cggccgccacctcgtcctcc 225 |||||||||||||||||||| Sbjct: 48529 cggccgccacctcgtcctcc 48510
>dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_D08 Length = 88854 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 24810 caccgccgtcaccgccgacc 24791
>dbj|AP005697.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0005C03 Length = 166423 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 89426 caccgccgtcaccgccgacc 89407
>dbj|AK025993.1| Homo sapiens cDNA: FLJ22340 fis, clone HRC06030, highly similar to HSA269529 Homo sapiens mRNA for glycerol 3-phosphate permease (SLC37A1 gene) Length = 1470 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 ctcaacaccaccgccgtcaccgccgacc 144 |||| ||||||||||||| ||||||||| Sbjct: 190 ctcatcaccaccgccgtctccgccgacc 217
>emb|AJ269529.2|HSA269529 Homo sapiens mRNA for glycerol 3-phosphate permease (SLC37A1 gene) Length = 3068 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 ctcaacaccaccgccgtcaccgccgacc 144 |||| ||||||||||||| ||||||||| Sbjct: 1727 ctcatcaccaccgccgtctccgccgacc 1754
>emb|AL772186.11| Mouse DNA sequence from clone RP23-281K3 on chromosome 4, complete sequence Length = 205714 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 215 cctcgtcctccctagcttcttctc 238 |||| ||||||||||||||||||| Sbjct: 140460 cctcttcctccctagcttcttctc 140437
>dbj|AP001747.1| Homo sapiens genomic DNA, chromosome 21q, section 91/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 117 ctcaacaccaccgccgtcaccgccgacc 144 |||| ||||||||||||| ||||||||| Sbjct: 61887 ctcatcaccaccgccgtctccgccgacc 61914
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 caccgccgtcaccgccgacc 144 |||||||||||||||||||| Sbjct: 1265091 caccgccgtcaccgccgacc 1265110
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gatcaagggcgagggcgaga 435 |||||||||||||||||||| Sbjct: 3473686 gatcaagggcgagggcgaga 3473705
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ccaccgccgtcaccgccgac 143 |||||||||||||||||||| Sbjct: 13580221 ccaccgccgtcaccgccgac 13580202
>emb|AL713929.5|CNS07YP6 Oryza sativa chromosome 12, . BAC OSJNBb0029H23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 119798 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 ccaccgccgtcaccgccgac 143 |||||||||||||||||||| Sbjct: 71277 ccaccgccgtcaccgccgac 71296 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,569,373 Number of Sequences: 3902068 Number of extensions: 2569373 Number of successful extensions: 65528 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63202 Number of HSP's gapped (non-prelim): 2324 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)