>TRMU_XYLFA (Q9PDD9) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 379

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 392 NLDCLKYSTTKYTRFLHPLKR*KTSTISTGHYVQRRRQWQEWHIVQ 529
           N D L     K+  FL   +     +I+TGHY + +   Q WH+++
Sbjct: 94  NPDVLCNREIKFKHFLETARELGADSIATGHYARIKHYRQRWHLLR 139

>UBP21_SCHPO (Q9UTT1) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 21) (Ubiquitin-specific
            processing protease 21) (Deubiquitinating enzyme 21)
          Length = 1129

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +1

Query: 346  MKVIVNQVDLSHPDAE-LRLLEVFYHKIYKIFAPTEKIENIND 471
            ++ +  +V L+  DA  LRL EV+ H+I K   PT+ I ++N+
Sbjct: 957  LRQVTQKVPLNAEDASRLRLYEVYNHRILKSHLPTDGIYDLNE 999

>ORC3_YEAST (P54790) Origin recognition complex subunit 3 (Origin recognition|
           complex protein 62 kDa subunit)
          Length = 616

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 438 KNLVYFVVEYFKQSKFSIRMGQVNL-IDNDFHMTSLKTSPTMLFF 307
           K L Y ++ YF Q+ FS+ +  VN+   ND ++  L   PT +FF
Sbjct: 319 KMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKILSRCPTFMFF 363

>TRMU_XYLFT (Q87DM0) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 379

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 392 NLDCLKYSTTKYTRFLHPLKR*KTSTISTGHYVQRRRQWQEWHIVQ 529
           N D L     K+  FL   +      I+TGHY +     Q WH+++
Sbjct: 94  NPDVLCNREIKFKHFLETARELGADRIATGHYARIEHYRQRWHLLR 139

>JNK1_CAEEL (Q8WQG9) Stress-activated protein kinase jnk-1 (EC 2.7.11.24)|
          Length = 463

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +1

Query: 391 ELRLLEVFYHK----IYKIFAPTEKIENINDQYWTLRAEEASMARVAYCTVEED 540
           EL+L+ +  HK    I   F P +K++  ND Y  +   +A++ +V    ++ +
Sbjct: 166 ELKLMSLVNHKNIIGILNCFTPQKKLDEFNDLYIVMELMDANLCQVIQMDLDHE 219

>ERA_BACHD (Q9KD52) GTP-binding protein era homolog|
          Length = 304

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 352 VIVNQVDLSHPDAELRLLEVFYHK 423
           +++N++D  HPD  L L+E + HK
Sbjct: 123 LVINKIDKVHPDDLLSLIETYRHK 146


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,324,708
Number of Sequences: 219361
Number of extensions: 1367591
Number of successful extensions: 2809
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2809
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)