ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags25i12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104750.1| Zea mays PCO077049 mRNA sequence 182 9e-43
2ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative... 157 5e-35
3dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
4gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome... 86 2e-13
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 86 2e-13
7ref|NM_103905.2| Arabidopsis thaliana ALATS (ALANYL-TRNA SYNTHET... 58 4e-05
8gb|BT008807.1| Arabidopsis thaliana At1g50200 gene, complete cds 58 4e-05
9gb|BT008649.1| Arabidopsis thaliana clone RAFL09-78-D07 (R19577)... 58 4e-05
10gb|BT002526.1| Arabidopsis thaliana Unknown protein mRNA, comple... 58 4e-05
11emb|Z22673.1|ATTRNASYA A.thaliana tRNA synthetase 58 4e-05
12gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genom... 46 0.14
13emb|AJ720131.1| Gallus gallus mRNA for hypothetical protein, clo... 46 0.14
14ref|NM_001005836.1| Gallus gallus alanyl-tRNA synthetase (AARS),... 46 0.14
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
17emb|AL162891.4|CNS01RI6 Human chromosome 14 DNA sequence BAC R-3... 42 2.1
18gb|AC100726.7| Mus musculus chromosome 19, clone RP24-245B11, co... 40 8.5
19gb|AC183807.3| Pan troglodytes BAC clone CH251-65H22 from chromo... 40 8.5
20gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, comp... 40 8.5
21gb|AC122294.2| Mus musculus BAC clone RP23-259F3 from 19, comple... 40 8.5
22emb|BX248405.4| Human DNA sequence from clone RP11-265K22 on chr... 40 8.5
23emb|AL691447.18| Human DNA sequence from clone RP11-307E17 on ch... 40 8.5
24emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chr... 40 8.5
25ref|XM_790396.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.5
26emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 b... 40 8.5
27gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete ... 40 8.5
28gb|AC156392.5| Mus musculus 10 BAC RP24-320E8 (Roswell Park Canc... 40 8.5
29gb|DQ103816.1| Uncultured marine eukaryote clone M1_18G11 small ... 40 8.5
30dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 8.5
31gb|AF402608.1| Phaseolus vulgaris TGA-type basic leucine zipper ... 40 8.5
32gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 8.5
33emb|AL772369.6| Human DNA sequence from clone RP11-395L9 on chro... 40 8.5
34emb|AL772267.9| Human DNA sequence from clone RP13-37K15 on chro... 40 8.5
35dbj|AP001294.1| Mus musculus genomic DNA, chromosome 7, clone:B3... 40 8.5 
>gb|AY104750.1| Zea mays PCO077049 mRNA sequence
          Length = 3244

 Score =  182 bits (92), Expect = 9e-43
 Identities = 194/228 (85%)
 Strand = Plus / Plus

                                                                        
Query: 9    atttgttctgtgggacacctatggttatccaattgatttgactgaggtcatggcagttga 68
            |||| |||| |||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct: 1394 atttattctttgggacacttatggttatccaattgatttgactgaggtcatggcaatcga 1453

                                                                        
Query: 69   cttcgggctatctgttgacatggagggttttaatgcttctatggaagaagcaaggcaaaa 128
            ||  |||||| ||||||| | | |||| ||||||||||||||||||||||| ||||||||
Sbjct: 1454 ctatgggctaactgttgataagaaggggtttaatgcttctatggaagaagcgaggcaaaa 1513

                                                                        
Query: 129  ggctaggaatgctcgctacaaggccggtggtaaatctattgtcctggatgctaatgctac 188
             ||||| ||||||||  ||||| | || || || |||||||   ||||||| ||||||||
Sbjct: 1514 agctagaaatgctcgtaacaagtctggagggaactctattgctatggatgcgaatgctac 1573

                                                            
Query: 189  atcggagttgcgcaatcagggacttgccagcacaaatgatagcccaaa 236
            | || |||||||||| | ||| |||||||||||  | |||||||||||
Sbjct: 1574 agcgcagttgcgcaaactggggcttgccagcacggacgatagcccaaa 1621



 Score =  135 bits (68), Expect = 2e-28
 Identities = 158/188 (84%)
 Strand = Plus / Plus

                                                                        
Query: 262  gtggtgaaagctatctatactggctcagagttcatagccactgcatctggtgatgaagac 321
            |||||||| |||||||||||||||||||| | |||  | || ||  |||||||||  |||
Sbjct: 1650 gtggtgaaggctatctatactggctcagaatacattactacagctactggtgatggggac 1709

                                                                        
Query: 322  ttcggtctggttttggaaagtacaagcttctatgcagaacagggtggtcagatctatgac 381
            || ||||| ||  ||||||||||||| |||||||| ||||| || || ||||| | ||||
Sbjct: 1710 tttggtcttgtgctggaaagtacaagtttctatgctgaacaaggaggccagatatttgac 1769

                                                                        
Query: 382  actgggagtatcgaggggccatctggatctttcactgtgaataatgtccaagtgtttgct 441
            |||||||| || |||||| ||| |||| |||||| |||||| || |||||||||||||||
Sbjct: 1770 actgggagcattgaggggtcatttggaactttcaatgtgaacaacgtccaagtgtttgct 1829

                    
Query: 442  ggctatgt 449
            ||||||||
Sbjct: 1830 ggctatgt 1837



 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                        
Query: 511  gtgaaatgcaaggttgattacacacggcgtactctcatttctccaaaccacacatgtacc 570
            |||| |||||||||||||||||  ||||| || || ||| ||||||| || || ||||||
Sbjct: 1893 gtgatatgcaaggttgattacaaccggcgcacactgattgctccaaatcatacgtgtacc 1952

                                                                
Query: 571  catatgctgaactttgctctaaaggaagtacttggtgaccatgttgaccaga 622
            || ||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 1953 cacatgttgaactttgctctaagggaagtacttggtgatcatgttgaccaga 2004
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>ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative cytosolic tRNA-Ala
            synthetase (OSJNBb0022I16.6), mRNA
          Length = 2085

 Score =  157 bits (79), Expect = 5e-35
 Identities = 124/139 (89%)
 Strand = Plus / Plus

                                                                        
Query: 484  tccaaggcattgtctgttggcgatgaagtgaaatgcaaggttgattacacacggcgtact 543
            |||||||||||||||||||| ||| |||||  |||||||||||||||  | || ||| ||
Sbjct: 940  tccaaggcattgtctgttggtgataaagtggcatgcaaggttgattatgctcgccgtgct 999

                                                                        
Query: 544  ctcatttctccaaaccacacatgtacccatatgctgaactttgctctaaaggaagtactt 603
            |||||| |||||||||| ||||||||||||||||||||||||||||||  |||| |||||
Sbjct: 1000 ctcattgctccaaaccatacatgtacccatatgctgaactttgctctacgggaaatactt 1059

                               
Query: 604  ggtgaccatgttgaccaga 622
            ||||| |||||||||||||
Sbjct: 1060 ggtgatcatgttgaccaga 1078



 Score =  113 bits (57), Expect = 7e-22
 Identities = 183/225 (81%)
 Strand = Plus / Plus

                                                                       
Query: 9   atttgttctgtgggacacctatggttatccaattgatttgactgaggtcatggcagttga 68
           |||||| ||||||||||||||||| |||||| ||||  ||||||||||||||| ||||||
Sbjct: 471 atttgtcctgtgggacacctatggctatccagttgacctgactgaggtcatgggagttga 530

                                                                       
Query: 69  cttcgggctatctgttgacatggagggttttaatgcttctatggaagaagcaaggcaaaa 128
           ||  ||  |   ||| ||   |||||||||| ||||| | ||||||||||| ||||| ||
Sbjct: 531 ctatggcttgagtgtggatcgggagggttttgatgctgcaatggaagaagcgaggcagaa 590

                                                                       
Query: 129 ggctaggaatgctcgctacaaggccggtggtaaatctattgtcctggatgctaatgctac 188
           |||||||||||| |||| |||||| || |  || || |||||| ||||||| ||||||||
Sbjct: 591 ggctaggaatgcacgcttcaaggctggggaaaattccattgtcttggatgccaatgctac 650

                                                        
Query: 189 atcggagttgcgcaatcagggacttgccagcacaaatgatagccc 233
           | |  || ||||||| || || ||||| || ||| ||||||||||
Sbjct: 651 agcacagctgcgcaaccaagggcttgctagtacagatgatagccc 695



 Score =  105 bits (53), Expect = 2e-19
 Identities = 137/165 (83%)
 Strand = Plus / Plus

                                                                       
Query: 304 gcatctggtgatgaagacttcggtctggttttggaaagtacaagcttctatgcagaacag 363
           |||||||| ||||| ||||| || || ||  ||||||||||||||||||| || ||||||
Sbjct: 766 gcatctggcgatgaggactttggccttgtcctggaaagtacaagcttctacgctgaacag 825

                                                                       
Query: 364 ggtggtcagatctatgacactgggagtatcgaggggccatctggatctttcactgtgaat 423
           ||||||||||| |||||||||||||  || || ||| | |  |||||||||| ||| | |
Sbjct: 826 ggtggtcagatatatgacactgggaaaattgaagggtctttcggatctttcaatgtaact 885

                                                        
Query: 424 aatgtccaagtgtttgctggctatgtcttgcatatcggttcattt 468
           ||||| ||||| |||||||| |||||  ||||||| || ||||||
Sbjct: 886 aatgttcaagtatttgctgggtatgtgctgcatatgggctcattt 930
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>dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M16, full
            insert sequence
          Length = 3214

 Score =  157 bits (79), Expect = 5e-35
 Identities = 124/139 (89%)
 Strand = Plus / Plus

                                                                        
Query: 484  tccaaggcattgtctgttggcgatgaagtgaaatgcaaggttgattacacacggcgtact 543
            |||||||||||||||||||| ||| |||||  |||||||||||||||  | || ||| ||
Sbjct: 1863 tccaaggcattgtctgttggtgataaagtggcatgcaaggttgattatgctcgccgtgct 1922

                                                                        
Query: 544  ctcatttctccaaaccacacatgtacccatatgctgaactttgctctaaaggaagtactt 603
            |||||| |||||||||| ||||||||||||||||||||||||||||||  |||| |||||
Sbjct: 1923 ctcattgctccaaaccatacatgtacccatatgctgaactttgctctacgggaaatactt 1982

                               
Query: 604  ggtgaccatgttgaccaga 622
            ||||| |||||||||||||
Sbjct: 1983 ggtgatcatgttgaccaga 2001



 Score =  113 bits (57), Expect = 7e-22
 Identities = 183/225 (81%)
 Strand = Plus / Plus

                                                                        
Query: 9    atttgttctgtgggacacctatggttatccaattgatttgactgaggtcatggcagttga 68
            |||||| ||||||||||||||||| |||||| ||||  ||||||||||||||| ||||||
Sbjct: 1394 atttgtcctgtgggacacctatggctatccagttgacctgactgaggtcatgggagttga 1453

                                                                        
Query: 69   cttcgggctatctgttgacatggagggttttaatgcttctatggaagaagcaaggcaaaa 128
            ||  ||  |   ||| ||   |||||||||| ||||| | ||||||||||| ||||| ||
Sbjct: 1454 ctatggcttgagtgtggatcgggagggttttgatgctgcaatggaagaagcgaggcagaa 1513

                                                                        
Query: 129  ggctaggaatgctcgctacaaggccggtggtaaatctattgtcctggatgctaatgctac 188
            |||||||||||| |||| |||||| || |  || || |||||| ||||||| ||||||||
Sbjct: 1514 ggctaggaatgcacgcttcaaggctggggaaaattccattgtcttggatgccaatgctac 1573

                                                         
Query: 189  atcggagttgcgcaatcagggacttgccagcacaaatgatagccc 233
            | |  || ||||||| || || ||||| || ||| ||||||||||
Sbjct: 1574 agcacagctgcgcaaccaagggcttgctagtacagatgatagccc 1618



 Score =  105 bits (53), Expect = 2e-19
 Identities = 137/165 (83%)
 Strand = Plus / Plus

                                                                        
Query: 304  gcatctggtgatgaagacttcggtctggttttggaaagtacaagcttctatgcagaacag 363
            |||||||| ||||| ||||| || || ||  ||||||||||||||||||| || ||||||
Sbjct: 1689 gcatctggcgatgaggactttggccttgtcctggaaagtacaagcttctacgctgaacag 1748

                                                                        
Query: 364  ggtggtcagatctatgacactgggagtatcgaggggccatctggatctttcactgtgaat 423
            ||||||||||| |||||||||||||  || || ||| | |  |||||||||| ||| | |
Sbjct: 1749 ggtggtcagatatatgacactgggaaaattgaagggtctttcggatctttcaatgtaact 1808

                                                         
Query: 424  aatgtccaagtgtttgctggctatgtcttgcatatcggttcattt 468
            ||||| ||||| |||||||| |||||  ||||||| || ||||||
Sbjct: 1809 aatgttcaagtatttgctgggtatgtgctgcatatgggctcattt 1853
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>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0022I16, complete sequence
          Length = 127068

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 521   aggttgattacacacggcgtactctcatttctccaaaccacacatgtacccatatgctga 580
             ||||||||||  | || ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct: 54098 aggttgattatgctcgccgtgctctcattgctccaaaccatacatgtacccatatgctga 54157

                        
Query: 581   actttgctcta 591
             |||||||||||
Sbjct: 54158 actttgctcta 54168



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 90    ggagggttttaatgcttctatggaagaagcaaggcaaaaggctaggaatgctcgctacaa 149
             |||||||||| ||||| | ||||||||||| ||||| |||||||||||||| |||| |||
Sbjct: 52237 ggagggttttgatgctgcaatggaagaagcgaggcagaaggctaggaatgcacgcttcaa 52296

               
Query: 150   gg 151
             ||
Sbjct: 52297 gg 52298



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                         
Query: 304   gcatctggtgatgaagacttcggtctggttttggaaagtacaagcttctatgcagaacag 363
             |||||||| ||||| ||||| || || ||  ||||||||||||||||||| || ||||||
Sbjct: 53241 gcatctggcgatgaggactttggccttgtcctggaaagtacaagcttctacgctgaacag 53300

                      
Query: 364   ggtggtcag 372
             |||||||||
Sbjct: 53301 ggtggtcag 53309



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 9     atttgttctgtgggacacctatggttatccaattgatttgactgaggt 56
             |||||| ||||||||||||||||| |||||| ||||  ||||||||||
Sbjct: 52071 atttgtcctgtgggacacctatggctatccagttgacctgactgaggt 52118



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                      
Query: 484   tccaaggcattgtctgttggcgatgaagtgaaatgcaaggt 524
             |||||||||||||||||||| ||| |||||  |||||||||
Sbjct: 53969 tccaaggcattgtctgttggtgataaagtggcatgcaaggt 54009



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                         
Query: 369   tcagatctatgacactgggagtatcgaggggccatctggatctttcactgtgaataatgt 428
             |||||| |||||||||||||  || || ||| | |  |||||||||| ||| | ||||||
Sbjct: 53860 tcagatatatgacactgggaaaattgaagggtctttcggatctttcaatgtaactaatgt 53919

                                                     
Query: 429   ccaagtgtttgctggctatgtcttgcatatcggttcattt 468
              ||||| |||||||| |||||  ||||||| || ||||||
Sbjct: 53920 tcaagtatttgctgggtatgtgctgcatatgggctcattt 53959



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 593   aggaagtacttggtgaccatgttgaccaga 622
             ||||| |||||||||| |||||||||||||
Sbjct: 54249 aggaaatacttggtgatcatgttgaccaga 54278
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                           
Query: 521     aggttgattacacacggcgtactctcatttctccaaaccacacatgtacccatatgctga 580
               ||||||||||  | || ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct: 5290900 aggttgattatgctcgccgtgctctcattgctccaaaccatacatgtacccatatgctga 5290959

                          
Query: 581     actttgctcta 591
               |||||||||||
Sbjct: 5290960 actttgctcta 5290970



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                           
Query: 90      ggagggttttaatgcttctatggaagaagcaaggcaaaaggctaggaatgctcgctacaa 149
               |||||||||| ||||| | ||||||||||| ||||| |||||||||||||| |||| |||
Sbjct: 5289039 ggagggttttgatgctgcaatggaagaagcgaggcagaaggctaggaatgcacgcttcaa 5289098

                 
Query: 150     gg 151
               ||
Sbjct: 5289099 gg 5289100



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                           
Query: 304     gcatctggtgatgaagacttcggtctggttttggaaagtacaagcttctatgcagaacag 363
               |||||||| ||||| ||||| || || ||  ||||||||||||||||||| || ||||||
Sbjct: 5290043 gcatctggcgatgaggactttggccttgtcctggaaagtacaagcttctacgctgaacag 5290102

                        
Query: 364     ggtggtcag 372
               |||||||||
Sbjct: 5290103 ggtggtcag 5290111



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                               
Query: 9       atttgttctgtgggacacctatggttatccaattgatttgactgaggt 56
               |||||| ||||||||||||||||| |||||| ||||  ||||||||||
Sbjct: 5288873 atttgtcctgtgggacacctatggctatccagttgacctgactgaggt 5288920



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 484     tccaaggcattgtctgttggcgatgaagtgaaatgcaaggt 524
               |||||||||||||||||||| ||| |||||  |||||||||
Sbjct: 5290771 tccaaggcattgtctgttggtgataaagtggcatgcaaggt 5290811



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                           
Query: 369     tcagatctatgacactgggagtatcgaggggccatctggatctttcactgtgaataatgt 428
               |||||| |||||||||||||  || || ||| | |  |||||||||| ||| | ||||||
Sbjct: 5290662 tcagatatatgacactgggaaaattgaagggtctttcggatctttcaatgtaactaatgt 5290721

                                                       
Query: 429     ccaagtgtttgctggctatgtcttgcatatcggttcattt 468
                ||||| |||||||| |||||  ||||||| || ||||||
Sbjct: 5290722 tcaagtatttgctgggtatgtgctgcatatgggctcattt 5290761



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 593     aggaagtacttggtgaccatgttgaccaga 622
               ||||| |||||||||| |||||||||||||
Sbjct: 5291051 aggaaatacttggtgatcatgttgaccaga 5291080
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                           
Query: 521     aggttgattacacacggcgtactctcatttctccaaaccacacatgtacccatatgctga 580
               ||||||||||  | || ||| |||||||| |||||||||| |||||||||||||||||||
Sbjct: 5291687 aggttgattatgctcgccgtgctctcattgctccaaaccatacatgtacccatatgctga 5291746

                          
Query: 581     actttgctcta 591
               |||||||||||
Sbjct: 5291747 actttgctcta 5291757



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                           
Query: 90      ggagggttttaatgcttctatggaagaagcaaggcaaaaggctaggaatgctcgctacaa 149
               |||||||||| ||||| | ||||||||||| ||||| |||||||||||||| |||| |||
Sbjct: 5289826 ggagggttttgatgctgcaatggaagaagcgaggcagaaggctaggaatgcacgcttcaa 5289885

                 
Query: 150     gg 151
               ||
Sbjct: 5289886 gg 5289887



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                           
Query: 304     gcatctggtgatgaagacttcggtctggttttggaaagtacaagcttctatgcagaacag 363
               |||||||| ||||| ||||| || || ||  ||||||||||||||||||| || ||||||
Sbjct: 5290830 gcatctggcgatgaggactttggccttgtcctggaaagtacaagcttctacgctgaacag 5290889

                        
Query: 364     ggtggtcag 372
               |||||||||
Sbjct: 5290890 ggtggtcag 5290898



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                               
Query: 9       atttgttctgtgggacacctatggttatccaattgatttgactgaggt 56
               |||||| ||||||||||||||||| |||||| ||||  ||||||||||
Sbjct: 5289660 atttgtcctgtgggacacctatggctatccagttgacctgactgaggt 5289707



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 484     tccaaggcattgtctgttggcgatgaagtgaaatgcaaggt 524
               |||||||||||||||||||| ||| |||||  |||||||||
Sbjct: 5291558 tccaaggcattgtctgttggtgataaagtggcatgcaaggt 5291598



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                           
Query: 369     tcagatctatgacactgggagtatcgaggggccatctggatctttcactgtgaataatgt 428
               |||||| |||||||||||||  || || ||| | |  |||||||||| ||| | ||||||
Sbjct: 5291449 tcagatatatgacactgggaaaattgaagggtctttcggatctttcaatgtaactaatgt 5291508

                                                       
Query: 429     ccaagtgtttgctggctatgtcttgcatatcggttcattt 468
                ||||| |||||||| |||||  ||||||| || ||||||
Sbjct: 5291509 tcaagtatttgctgggtatgtgctgcatatgggctcattt 5291548



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 593     aggaagtacttggtgaccatgttgaccaga 622
               ||||| |||||||||| |||||||||||||
Sbjct: 5291838 aggaaatacttggtgatcatgttgaccaga 5291867
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>ref|NM_103905.2| Arabidopsis thaliana ALATS (ALANYL-TRNA SYNTHETASE); ATP binding /
            alanine-tRNA ligase/ nucleic acid binding AT1G50200
            (ALATS) mRNA, complete cds
          Length = 3397

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 342  tacaagcttctatgcagaacagggtggtcagatctatgacactgg 386
            ||||||||||||||| || |||||||||||||| | |||||||||
Sbjct: 1895 tacaagcttctatgctgagcagggtggtcagatttttgacactgg 1939
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>gb|BT008807.1| Arabidopsis thaliana At1g50200 gene, complete cds
          Length = 2868

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 342  tacaagcttctatgcagaacagggtggtcagatctatgacactgg 386
            ||||||||||||||| || |||||||||||||| | |||||||||
Sbjct: 1581 tacaagcttctatgctgagcagggtggtcagatttttgacactgg 1625
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>gb|BT008649.1| Arabidopsis thaliana clone RAFL09-78-D07 (R19577) At1g50200 mRNA,
            complete sequence
          Length = 3295

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 342  tacaagcttctatgcagaacagggtggtcagatctatgacactgg 386
            ||||||||||||||| || |||||||||||||| | |||||||||
Sbjct: 1735 tacaagcttctatgctgagcagggtggtcagatttttgacactgg 1779
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>gb|BT002526.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 3172

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 342  tacaagcttctatgcagaacagggtggtcagatctatgacactgg 386
            ||||||||||||||| || |||||||||||||| | |||||||||
Sbjct: 1720 tacaagcttctatgctgagcagggtggtcagatttttgacactgg 1764
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>emb|Z22673.1|ATTRNASYA A.thaliana tRNA synthetase
          Length = 3357

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 342  tacaagcttctatgcagaacagggtggtcagatctatgacactgg 386
            ||||||||||||||| || |||||||||||||| | |||||||||
Sbjct: 1895 tacaagcttctatgctgagcagggtggtcagatttttgacactgg 1939
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>gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genomic sequence, complete
             sequence
          Length = 100975

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 342   tacaagcttctatgcagaacagggtggtcag 372
             ||||||||||||||| || ||||||||||||
Sbjct: 82949 tacaagcttctatgctgagcagggtggtcag 82979
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>emb|AJ720131.1| Gallus gallus mRNA for hypothetical protein, clone 11d4
          Length = 3107

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 347  gcttctatgcagaacagggtggtcagatctatgac 381
            |||||||||| || |||||||| ||||||||||||
Sbjct: 1710 gcttctatgccgagcagggtggacagatctatgac 1744
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>ref|NM_001005836.1| Gallus gallus alanyl-tRNA synthetase (AARS), mRNA
          Length = 3107

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 347  gcttctatgcagaacagggtggtcagatctatgac 381
            |||||||||| || |||||||| ||||||||||||
Sbjct: 1710 gcttctatgccgagcagggtggacagatctatgac 1744
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 554      caaaccacacatgtacccata 574
                |||||||||||||||||||||
Sbjct: 27229231 caaaccacacatgtacccata 27229211
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>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0637D03
          Length = 180159

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 554   caaaccacacatgtacccata 574
             |||||||||||||||||||||
Sbjct: 86247 caaaccacacatgtacccata 86227
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>emb|AL162891.4|CNS01RI6 Human chromosome 14 DNA sequence BAC R-353P15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163452

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 560   acacatgtacccatatgctga 580
             |||||||||||||||||||||
Sbjct: 48801 acacatgtacccatatgctga 48821
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>gb|AC100726.7| Mus musculus chromosome 19, clone RP24-245B11, complete sequence
          Length = 176074

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 157  ggtaaatctattgtcctggatgct 180
            |||||||||| |||||||||||||
Sbjct: 9793 ggtaaatctagtgtcctggatgct 9770
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>gb|AC183807.3| Pan troglodytes BAC clone CH251-65H22 from chromosome 9, complete
             sequence
          Length = 171193

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 580   aactttgctctaaaggaagtactt 603
             |||||||| |||||||||||||||
Sbjct: 36762 aactttgcactaaaggaagtactt 36739
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>gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, complete sequence
          Length = 203141

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   gtatcgaggggccatctgga 408
             ||||||||||||||||||||
Sbjct: 40920 gtatcgaggggccatctgga 40901
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>gb|AC122294.2| Mus musculus BAC clone RP23-259F3 from 19, complete sequence
          Length = 160892

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 157   ggtaaatctattgtcctggatgct 180
             |||||||||| |||||||||||||
Sbjct: 59636 ggtaaatctagtgtcctggatgct 59659
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>emb|BX248405.4| Human DNA sequence from clone RP11-265K22 on chromosome 1 Contains part
             of the gene for a novel protein (FLJ16613), complete
             sequence
          Length = 88146

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   gatctttcactgtgaataat 426
             ||||||||||||||||||||
Sbjct: 62885 gatctttcactgtgaataat 62904
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>emb|AL691447.18| Human DNA sequence from clone RP11-307E17 on chromosome 9 Contains the
              gene for zinc finger protein 169, a voltage-dependent anion
              channel 1  (VDAC1) pseudogene, a novel gene
              (DKFZp434I1117), a novel pseudogene, a novel gene, the 5'
              end of a gene for a novel protein similar to mouse
              hippocampus abundant gene transcript 1(HIAT1) and three CpG
              islands, complete sequence
          Length = 171255

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 580    aactttgctctaaaggaagtactt 603
              |||||||| |||||||||||||||
Sbjct: 106372 aactttgcactaaaggaagtactt 106395
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>emb|AL158827.27| Human DNA sequence from clone RP11-330M2 on chromosome 9 Contains a
              pseudogene similar to part of a zinc finger protein, two
              novel pseudogenes, a novel gene similar to DKFZP434I1117, a
              novel pseudogene (FLJ23476), two novel gene, a novel gene
              similar to MGC12954 and four CpG islands, complete sequence
          Length = 186108

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 580    aactttgctctaaaggaagtactt 603
              |||||||| |||||||||||||||
Sbjct: 101675 aactttgcactaaaggaagtactt 101652
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>ref|XM_790396.1| PREDICTED: Strongylocentrotus purpuratus similar to Tho2 (LOC590807),
            mRNA
          Length = 3495

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 602  ttggtgaccatgttgaccag 621
            ||||||||||||||||||||
Sbjct: 2402 ttggtgaccatgttgaccag 2383
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>emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 bp, chromosome 7
          Length = 281000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    gtatcgaggggccatctgga 408
              ||||||||||||||||||||
Sbjct: 181956 gtatcgaggggccatctgga 181975
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>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence
          Length = 163823

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   caaatgatagcccaaaattc 240
             ||||||||||||||||||||
Sbjct: 90513 caaatgatagcccaaaattc 90532
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>gb|AC156392.5| Mus musculus 10 BAC RP24-320E8 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 188305

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   atactggctcagagttcata 297
             ||||||||||||||||||||
Sbjct: 40997 atactggctcagagttcata 40978
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>gb|DQ103816.1| Uncultured marine eukaryote clone M1_18G11 small subunit ribosomal
           RNA gene, partial sequence
          Length = 1654

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 406 ggatctttcactgtgaataa 425
           ||||||||||||||||||||
Sbjct: 673 ggatctttcactgtgaataa 692
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 493     ttgtctgttggcgatgaagtgaaa 516
               ||||||||||| ||||||||||||
Sbjct: 2390639 ttgtctgttggagatgaagtgaaa 2390662
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>gb|AF402608.1| Phaseolus vulgaris TGA-type basic leucine zipper protein TGA2.1 mRNA,
            complete cds
          Length = 1940

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  ttctatggaagaagcaaggc 124
            ||||||||||||||||||||
Sbjct: 1835 ttctatggaagaagcaaggc 1816
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    gaagcaaggcaaaaggctag 134
              ||||||||||||||||||||
Sbjct: 142452 gaagcaaggcaaaaggctag 142471
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>emb|AL772369.6| Human DNA sequence from clone RP11-395L9 on chromosome 9, complete
             sequence
          Length = 71591

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 580   aactttgctctaaaggaagtactt 603
             |||||||| |||||||||||||||
Sbjct: 16604 aactttgcactaaaggaagtactt 16627
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>emb|AL772267.9| Human DNA sequence from clone RP13-37K15 on chromosome 9, complete
             sequence
          Length = 115952

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 580   aactttgctctaaaggaagtactt 603
             |||||||| |||||||||||||||
Sbjct: 62957 aactttgcactaaaggaagtactt 62980
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>dbj|AP001294.1| Mus musculus genomic DNA, chromosome 7, clone:B385, complete sequence
          Length = 86661

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   gtatcgaggggccatctgga 408
             ||||||||||||||||||||
Sbjct: 44828 gtatcgaggggccatctgga 44847


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,137,637
Number of Sequences: 3902068
Number of extensions: 5137637
Number of successful extensions: 110576
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110312
Number of HSP's gapped (non-prelim): 263
length of query: 622
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 599
effective length of database: 17,143,297,704
effective search space: 10268835324696
effective search space used: 10268835324696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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