Clone Information

BLAST Search Result

Clone Name	bags25h24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	208	1e-50
2	dbj\|AK069200.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	208	1e-50
3	dbj\|AK067367.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	208	1e-50
4	dbj\|AK065699.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	208	1e-50
5	dbj\|AK062564.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	208	1e-50
6	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	208	1e-50
7	emb\|AL731747.2\|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa...	208	1e-50
8	ref\|NM_118589.2\| Arabidopsis thaliana UBP16 (UBIQUITIN-SPECIFIC ...	48	0.031
9	emb\|AL161561.2\|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, ...	48	0.031
10	emb\|AL035356.1\|ATF22K18 Arabidopsis thaliana DNA chromosome 4, B...	48	0.031
11	gb\|AF302666.1\|AF302666 Arabidopsis thaliana ubiquitin-specific p...	48	0.031
12	gb\|AC096684.3\| Takifugu rubripes clone 241N7, complete sequence	46	0.12
13	gb\|AC096997.3\| Takifugu rubripes clone 217A23, complete sequence	46	0.12
14	gb\|AC124659.10\| Mus musculus chromosome 15, clone RP24-167K18, c...	42	1.9
15	gb\|AC091396.4\| Mus musculus strain C57BL6/J chromosome 6 clone R...	42	1.9
16	gb\|AC122835.3\| Mus musculus BAC clone RP23-187I18 from 3, comple...	42	1.9
17	gb\|BC051037.1\| Mus musculus murinoglobulin 1, mRNA (cDNA clone M...	40	7.5
18	ref\|NM_008645.2\| Mus musculus murinoglobulin 1 (Mug1), mRNA	40	7.5
19	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	40	7.5
20	ref\|XM_974532.1\| PREDICTED: Mus musculus similar to murinoglobul...	40	7.5
21	ref\|XR_002817.1\| PREDICTED: Mus musculus similar to murinoglobul...	40	7.5
22	ref\|XM_987710.1\| PREDICTED: Mus musculus similar to murinoglobul...	40	7.5
23	ref\|XM_917532.2\| PREDICTED: Mus musculus similar to murinoglobul...	40	7.5
24	gb\|BC036299.1\| Mus musculus, clone IMAGE:4195167, mRNA	40	7.5
25	gb\|AC163283.3\| Mus musculus BAC clone RP23-405A16 from chromosom...	40	7.5
26	emb\|BX548069.7\| Zebrafish DNA sequence from clone CH211-238G23 i...	40	7.5
27	gb\|AC093572.18\| Pan troglodytes clone rp43-25g23, complete sequence	40	7.5
28	gb\|AC146761.6\| Pan troglodytes clone ptb-54f16, complete sequence	40	7.5
29	dbj\|AK144541.1\| Mus musculus adult male gall bladder cDNA, RIKEN...	40	7.5
30	dbj\|AK144255.1\| Mus musculus cDNA, RIKEN full-length enriched li...	40	7.5
31	gb\|AC093669.4\| Homo sapiens BAC clone RP11-540E16 from 4, comple...	40	7.5
32	gb\|AC093158.2\| Homo sapiens chromosome 1 clone RP11-439H8, compl...	40	7.5
33	dbj\|AK149376.1\| Mus musculus adult male liver tumor cDNA, RIKEN ...	40	7.5
34	gb\|AC155312.2\| Mus musculus BAC clone RP23-411F11 from chromosom...	40	7.5
35	emb\|BX470077.5\| Zebrafish DNA sequence from clone CH211-136P17 i...	40	7.5
36	ref\|NM_063657.1\| Caenorhabditis elegans WEE homolog family membe...	40	7.5
37	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.5
38	gb\|AY211267.1\| Chlamydomonas reinhardtii zeaxanthin epoxidase pr...	40	7.5
39	dbj\|AB158770.1\| Amphidinium carterae plastid psbC mRNA for photo...	40	7.5
40	dbj\|BA000022.2\| Synechocystis sp. PCC 6803 DNA, complete genome	40	7.5
41	dbj\|AP005313.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.5
42	dbj\|AP005400.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.5
43	emb\|BX119975.7\| Zebrafish DNA sequence from clone CH211-200A16 i...	40	7.5
44	emb\|Z36752.1\|CEF35H8 Caenorhabditis elegans Cosmid F35H8, comple...	40	7.5
45	emb\|AL049832.3\|CNS0000G Human chromosome 14 DNA sequence BAC R-6...	40	7.5
46	gb\|BC049868.1\| Mus musculus cDNA clone IMAGE:5097177, containing...	40	7.5
47	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	40	7.5
48	gb\|M65736.1\|MUSMURINC Mouse murinoglobulin mRNA, complete cds	40	7.5
49	dbj\|AP000353.2\| Homo sapiens genomic DNA, chromosome 22q11.2, IG...	40	7.5

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  208 bits (105), Expect = 1e-50
 Identities = 192/220 (87%), Gaps = 1/220 (0%)
 Strand = Plus / Plus

                                                                            
Query: 17       cattccgcgctggtagttggtcaagnaggtaacggtgaaagtattgaatgtagcacgagg 76
                ||||| || |||| ||||||||||  |||||| ||||||||||||||| |||| ||||||
Sbjct: 21696303 cattctgcactggaagttggtcaa-caggtaagggtgaaagtattgaacgtagtacgagg 21696361

                                                                            
Query: 77       ccaggtcacattgacaatgaaggggggagaagatgatgaagacgagttgtcgtcgttaaa 136
                ||||||||| ||||||||||||| |||||||||||||||||| ||  || | || |||||
Sbjct: 21696362 ccaggtcacgttgacaatgaaggagggagaagatgatgaagaggatctggcttcattaaa 21696421

                                                                            
Query: 137      caccaacctgaagcagggatggtccagagggaccaacgctttcgagttagctttccgtag 196
                |||  | ||||||||||| ||||||||||||||||| || || ||| |||||||||||||
Sbjct: 21696422 cacacagctgaagcagggttggtccagagggaccaatgcatttgagctagctttccgtag 21696481

                                                        
Query: 197      gagcaaggaaatctctgcattcttggaccagagggaaaag 236
                ||  ||||||||||||||||| ||||| ||||||||||||
Sbjct: 21696482 gaataaggaaatctctgcatttttggatcagagggaaaag 21696521



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 278      ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 329
                |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 21696932 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 21696983

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>dbj|AK069200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A08, full
            insert sequence
          Length = 2554

 Score =  208 bits (105), Expect = 1e-50
 Identities = 192/220 (87%), Gaps = 1/220 (0%)
 Strand = Plus / Plus

                                                                        
Query: 17   cattccgcgctggtagttggtcaagnaggtaacggtgaaagtattgaatgtagcacgagg 76
            ||||| || |||| ||||||||||  |||||| ||||||||||||||| |||| ||||||
Sbjct: 1170 cattctgcactggaagttggtcaa-caggtaagggtgaaagtattgaacgtagtacgagg 1228

                                                                        
Query: 77   ccaggtcacattgacaatgaaggggggagaagatgatgaagacgagttgtcgtcgttaaa 136
            ||||||||| ||||||||||||| |||||||||||||||||| ||  || | || |||||
Sbjct: 1229 ccaggtcacgttgacaatgaaggagggagaagatgatgaagaggatctggcttcattaaa 1288

                                                                        
Query: 137  caccaacctgaagcagggatggtccagagggaccaacgctttcgagttagctttccgtag 196
            |||  | ||||||||||| ||||||||||||||||| || || ||| |||||||||||||
Sbjct: 1289 cacacagctgaagcagggttggtccagagggaccaatgcatttgagctagctttccgtag 1348

                                                    
Query: 197  gagcaaggaaatctctgcattcttggaccagagggaaaag 236
            ||  ||||||||||||||||| ||||| ||||||||||||
Sbjct: 1349 gaataaggaaatctctgcatttttggatcagagggaaaag 1388



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 278  ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 329
            |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 1799 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 1850

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>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full
            insert sequence
          Length = 3861

 Score =  208 bits (105), Expect = 1e-50
 Identities = 192/220 (87%), Gaps = 1/220 (0%)
 Strand = Plus / Plus

                                                                        
Query: 17   cattccgcgctggtagttggtcaagnaggtaacggtgaaagtattgaatgtagcacgagg 76
            ||||| || |||| ||||||||||  |||||| ||||||||||||||| |||| ||||||
Sbjct: 1163 cattctgcactggaagttggtcaa-caggtaagggtgaaagtattgaacgtagtacgagg 1221

                                                                        
Query: 77   ccaggtcacattgacaatgaaggggggagaagatgatgaagacgagttgtcgtcgttaaa 136
            ||||||||| ||||||||||||| |||||||||||||||||| ||  || | || |||||
Sbjct: 1222 ccaggtcacgttgacaatgaaggagggagaagatgatgaagaggatctggcttcattaaa 1281

                                                                        
Query: 137  caccaacctgaagcagggatggtccagagggaccaacgctttcgagttagctttccgtag 196
            |||  | ||||||||||| ||||||||||||||||| || || ||| |||||||||||||
Sbjct: 1282 cacacagctgaagcagggttggtccagagggaccaatgcatttgagctagctttccgtag 1341

                                                    
Query: 197  gagcaaggaaatctctgcattcttggaccagagggaaaag 236
            ||  ||||||||||||||||| ||||| ||||||||||||
Sbjct: 1342 gaataaggaaatctctgcatttttggatcagagggaaaag 1381



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 278  ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 329
            |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 1792 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 1843

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>dbj|AK065699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H04, full
            insert sequence
          Length = 2068

 Score =  208 bits (105), Expect = 1e-50
 Identities = 192/220 (87%), Gaps = 1/220 (0%)
 Strand = Plus / Plus

                                                                        
Query: 17   cattccgcgctggtagttggtcaagnaggtaacggtgaaagtattgaatgtagcacgagg 76
            ||||| || |||| ||||||||||  |||||| ||||||||||||||| |||| ||||||
Sbjct: 1170 cattctgcactggaagttggtcaa-caggtaagggtgaaagtattgaacgtagtacgagg 1228

                                                                        
Query: 77   ccaggtcacattgacaatgaaggggggagaagatgatgaagacgagttgtcgtcgttaaa 136
            ||||||||| ||||||||||||| |||||||||||||||||| ||  || | || |||||
Sbjct: 1229 ccaggtcacgttgacaatgaaggagggagaagatgatgaagaggatctggcttcattaaa 1288

                                                                        
Query: 137  caccaacctgaagcagggatggtccagagggaccaacgctttcgagttagctttccgtag 196
            |||  | ||||||||||| ||||||||||||||||| || || ||| |||||||||||||
Sbjct: 1289 cacacagctgaagcagggttggtccagagggaccaatgcatttgagctagctttccgtag 1348

                                                    
Query: 197  gagcaaggaaatctctgcattcttggaccagagggaaaag 236
            ||  ||||||||||||||||| ||||| ||||||||||||
Sbjct: 1349 gaataaggaaatctctgcatttttggatcagagggaaaag 1388



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 278  ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 329
            |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 1799 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 1850

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>dbj|AK062564.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F04, full
           insert sequence
          Length = 1800

 Score =  208 bits (105), Expect = 1e-50
 Identities = 192/220 (87%), Gaps = 1/220 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  cattccgcgctggtagttggtcaagnaggtaacggtgaaagtattgaatgtagcacgagg 76
           ||||| || |||| ||||||||||  |||||| ||||||||||||||| |||| ||||||
Sbjct: 398 cattctgcactggaagttggtcaa-caggtaagggtgaaagtattgaacgtagtacgagg 456

                                                                       
Query: 77  ccaggtcacattgacaatgaaggggggagaagatgatgaagacgagttgtcgtcgttaaa 136
           ||||||||| ||||||||||||| |||||||||||||||||| ||  || | || |||||
Sbjct: 457 ccaggtcacgttgacaatgaaggagggagaagatgatgaagaggatctggcttcattaaa 516

                                                                       
Query: 137 caccaacctgaagcagggatggtccagagggaccaacgctttcgagttagctttccgtag 196
           |||  | ||||||||||| ||||||||||||||||| || || ||| |||||||||||||
Sbjct: 517 cacacagctgaagcagggttggtccagagggaccaatgcatttgagctagctttccgtag 576

                                                   
Query: 197 gagcaaggaaatctctgcattcttggaccagagggaaaag 236
           ||  ||||||||||||||||| ||||| ||||||||||||
Sbjct: 577 gaataaggaaatctctgcatttttggatcagagggaaaag 616



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 278  ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 329
            |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 1027 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 1078

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  208 bits (105), Expect = 1e-50
 Identities = 192/220 (87%), Gaps = 1/220 (0%)
 Strand = Plus / Plus

                                                                            
Query: 17       cattccgcgctggtagttggtcaagnaggtaacggtgaaagtattgaatgtagcacgagg 76
                ||||| || |||| ||||||||||  |||||| ||||||||||||||| |||| ||||||
Sbjct: 21624648 cattctgcactggaagttggtcaa-caggtaagggtgaaagtattgaacgtagtacgagg 21624706

                                                                            
Query: 77       ccaggtcacattgacaatgaaggggggagaagatgatgaagacgagttgtcgtcgttaaa 136
                ||||||||| ||||||||||||| |||||||||||||||||| ||  || | || |||||
Sbjct: 21624707 ccaggtcacgttgacaatgaaggagggagaagatgatgaagaggatctggcttcattaaa 21624766

                                                                            
Query: 137      caccaacctgaagcagggatggtccagagggaccaacgctttcgagttagctttccgtag 196
                |||  | ||||||||||| ||||||||||||||||| || || ||| |||||||||||||
Sbjct: 21624767 cacacagctgaagcagggttggtccagagggaccaatgcatttgagctagctttccgtag 21624826

                                                        
Query: 197      gagcaaggaaatctctgcattcttggaccagagggaaaag 236
                ||  ||||||||||||||||| ||||| ||||||||||||
Sbjct: 21624827 gaataaggaaatctctgcatttttggatcagagggaaaag 21624866



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 278      ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 329
                |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 21625277 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 21625328

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>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 186030

 Score =  208 bits (105), Expect = 1e-50
 Identities = 192/220 (87%), Gaps = 1/220 (0%)
 Strand = Plus / Minus

                                                                          
Query: 17     cattccgcgctggtagttggtcaagnaggtaacggtgaaagtattgaatgtagcacgagg 76
              ||||| || |||| ||||||||||  |||||| ||||||||||||||| |||| ||||||
Sbjct: 116248 cattctgcactggaagttggtcaa-caggtaagggtgaaagtattgaacgtagtacgagg 116190

                                                                          
Query: 77     ccaggtcacattgacaatgaaggggggagaagatgatgaagacgagttgtcgtcgttaaa 136
              ||||||||| ||||||||||||| |||||||||||||||||| ||  || | || |||||
Sbjct: 116189 ccaggtcacgttgacaatgaaggagggagaagatgatgaagaggatctggcttcattaaa 116130

                                                                          
Query: 137    caccaacctgaagcagggatggtccagagggaccaacgctttcgagttagctttccgtag 196
              |||  | ||||||||||| ||||||||||||||||| || || ||| |||||||||||||
Sbjct: 116129 cacacagctgaagcagggttggtccagagggaccaatgcatttgagctagctttccgtag 116070

                                                      
Query: 197    gagcaaggaaatctctgcattcttggaccagagggaaaag 236
              ||  ||||||||||||||||| ||||| ||||||||||||
Sbjct: 116069 gaataaggaaatctctgcatttttggatcagagggaaaag 116030



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                  
Query: 278    ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 329
              |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 115619 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 115568

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>ref|NM_118589.2| Arabidopsis thaliana UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16);
            cysteine-type endopeptidase/ ubiquitin thiolesterase/
            ubiquitin-specific protease AT4G24560 (UBP16) mRNA,
            complete cds
          Length = 3721

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 94   tgaaggggggagaagatgatgaagacga 121
            ||||||||||||||||||| ||||||||
Sbjct: 3355 tgaaggggggagaagatgaggaagacga 3328

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>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61
          Length = 198402

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 94     tgaaggggggagaagatgatgaagacga 121
              ||||||||||||||||||| ||||||||
Sbjct: 147284 tgaaggggggagaagatgaggaagacga 147311

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>emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, BAC clone  F22K18 (ESSAII project)
          Length = 125803

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 94     tgaaggggggagaagatgatgaagacga 121
              ||||||||||||||||||| ||||||||
Sbjct: 101626 tgaaggggggagaagatgaggaagacga 101599

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>gb|AF302666.1|AF302666 Arabidopsis thaliana ubiquitin-specific protease 16 (UBP16) mRNA,
            complete cds
          Length = 3318

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 94   tgaaggggggagaagatgatgaagacga 121
            ||||||||||||||||||| ||||||||
Sbjct: 2968 tgaaggggggagaagatgaggaagacga 2941

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>gb|AC096684.3| Takifugu rubripes clone 241N7, complete sequence
          Length = 84793

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 100  ggggagaagatgatgaagacgag 122
            |||||||||||||||||||||||
Sbjct: 1996 ggggagaagatgatgaagacgag 2018

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>gb|AC096997.3| Takifugu rubripes clone 217A23, complete sequence
          Length = 74841

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 100   ggggagaagatgatgaagacgag 122
             |||||||||||||||||||||||
Sbjct: 69530 ggggagaagatgatgaagacgag 69552

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>gb|AC124659.10| Mus musculus chromosome 15, clone RP24-167K18, complete sequence
          Length = 180859

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   ctccagaagtgaaaacagaag 264
             |||||||||||||||||||||
Sbjct: 70620 ctccagaagtgaaaacagaag 70640

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>gb|AC091396.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-298M8, complete
              sequence
          Length = 237142

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     ccaggtcacattgacaatgaa 97
              |||||||||||||||||||||
Sbjct: 209181 ccaggtcacattgacaatgaa 209161

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>gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, complete sequence
          Length = 218449

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 274   agacttcagtttcaacttctg 294
             |||||||||||||||||||||
Sbjct: 51641 agacttcagtttcaacttctg 51621

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>gb|BC051037.1| Mus musculus murinoglobulin 1, mRNA (cDNA clone MGC:58950
            IMAGE:4195193), complete cds
          Length = 4672

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3375 atgaaggggggagtagatgatgaa 3398

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>ref|NM_008645.2| Mus musculus murinoglobulin 1 (Mug1), mRNA
          Length = 4672

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3375 atgaaggggggagtagatgatgaa 3398

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 373     aagctgtcactggtgccgtt 392
               ||||||||||||||||||||
Sbjct: 3841848 aagctgtcactggtgccgtt 3841867

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>ref|XM_974532.1| PREDICTED: Mus musculus similar to murinoglobulin 1 (LOC669343),
           mRNA
          Length = 1868

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 93  atgaaggggggagaagatgatgaa 116
           ||||||||||||| ||||||||||
Sbjct: 583 atgaaggggggagtagatgatgaa 606

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>ref|XR_002817.1| PREDICTED: Mus musculus similar to murinoglobulin 1 (LOC640530), mRNA
          Length = 4840

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3277 atgaaggggggagtagatgatgaa 3300

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>ref|XM_987710.1| PREDICTED: Mus musculus similar to murinoglobulin 1 (LOC640530), mRNA
          Length = 4737

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3400 atgaaggggggagtagatgatgaa 3423

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>ref|XM_917532.2| PREDICTED: Mus musculus similar to murinoglobulin 1 (LOC640530), mRNA
          Length = 5055

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3277 atgaaggggggagtagatgatgaa 3300

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>gb|BC036299.1| Mus musculus, clone IMAGE:4195167, mRNA
          Length = 4623

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3321 atgaaggggggagtagatgatgaa 3344

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>gb|AC163283.3| Mus musculus BAC clone RP23-405A16 from chromosome 12, complete sequence
          Length = 197540

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    gcattcttggaccagaggga 232
              ||||||||||||||||||||
Sbjct: 148105 gcattcttggaccagaggga 148124

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>emb|BX548069.7| Zebrafish DNA sequence from clone CH211-238G23 in linkage group 18,
             complete sequence
          Length = 142514

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   acagaagctgtcactggtgc 388
             ||||||||||||||||||||
Sbjct: 96938 acagaagctgtcactggtgc 96919

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>gb|AC093572.18| Pan troglodytes clone rp43-25g23, complete sequence
          Length = 195652

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    tgaagcagggatggtccaga 164
              ||||||||||||||||||||
Sbjct: 183435 tgaagcagggatggtccaga 183416

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>gb|AC146761.6| Pan troglodytes clone ptb-54f16, complete sequence
          Length = 153907

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  tgaagcagggatggtccaga 164
            ||||||||||||||||||||
Sbjct: 8580 tgaagcagggatggtccaga 8561

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>dbj|AK144541.1| Mus musculus adult male gall bladder cDNA, RIKEN full-length enriched
            library, clone:G630093A09 product:murinoglobulin 1, full
            insert sequence
          Length = 4612

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3333 atgaaggggggagtagatgatgaa 3356

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>dbj|AK144255.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:G630001M04 product:murinoglobulin 1, full insert
            sequence
          Length = 4618

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3339 atgaaggggggagtagatgatgaa 3362

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>gb|AC093669.4| Homo sapiens BAC clone RP11-540E16 from 4, complete sequence
          Length = 96120

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   acagaagttgagactgagac 277
             ||||||||||||||||||||
Sbjct: 78645 acagaagttgagactgagac 78626

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>gb|AC093158.2| Homo sapiens chromosome 1 clone RP11-439H8, complete sequence
          Length = 179582

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    aagttgaaagcaaagaggat 359
              ||||||||||||||||||||
Sbjct: 107975 aagttgaaagcaaagaggat 107994

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>dbj|AK149376.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched
            library, clone:C730002N16 product:murinoglobulin 1, full
            insert sequence
          Length = 3849

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3598 atgaaggggggagtagatgatgaa 3621

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>gb|AC155312.2| Mus musculus BAC clone RP23-411F11 from chromosome 12, complete
             sequence
          Length = 197795

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   gcattcttggaccagaggga 232
             ||||||||||||||||||||
Sbjct: 54240 gcattcttggaccagaggga 54259

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>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5,
             complete sequence
          Length = 165851

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 93    atgaaggggggagaagatgatgaa 116
             |||||||| |||||||||||||||
Sbjct: 37754 atgaagggaggagaagatgatgaa 37777

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>ref|NM_063657.1| Caenorhabditis elegans WEE homolog family member (wee-1.1) (wee-1.1)
            mRNA, complete cds
          Length = 1407

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  agaagatgatgaagacgagt 123
            ||||||||||||||||||||
Sbjct: 1263 agaagatgatgaagacgagt 1282

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 231      gaaaaggttactgctccaga 250
                ||||||||||||||||||||
Sbjct: 10874139 gaaaaggttactgctccaga 10874158

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>gb|AY211267.1| Chlamydomonas reinhardtii zeaxanthin epoxidase precursor (ZEP1) gene,
            complete cds; nuclear gene for chloroplast product
          Length = 6369

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 522  agctcttcaacagaagctgt 541
            ||||||||||||||||||||
Sbjct: 1022 agctcttcaacagaagctgt 1003



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 360  agctcttcaacagaagctgt 379
            ||||||||||||||||||||
Sbjct: 1022 agctcttcaacagaagctgt 1003

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>dbj|AB158770.1| Amphidinium carterae plastid psbC mRNA for photosystem II CP43
           protein, partial cds
          Length = 1066

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 496 ttgaagttgaaagcaaagag 515
           ||||||||||||||||||||
Sbjct: 345 ttgaagttgaaagcaaagag 326

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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     gaagctgtcactggtgccgt 391
               ||||||||||||||||||||
Sbjct: 1588465 gaagctgtcactggtgccgt 1588446

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>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   gaaaaggttactgctccaga 250
             ||||||||||||||||||||
Sbjct: 97862 gaaaaggttactgctccaga 97881

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>dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0698G06
          Length = 138282

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   gaaaaggttactgctccaga 250
             ||||||||||||||||||||
Sbjct: 13844 gaaaaggttactgctccaga 13863

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>emb|BX119975.7| Zebrafish DNA sequence from clone CH211-200A16 in linkage group 8,
             complete sequence
          Length = 154904

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   agctcttcaacagaagctgt 379
             ||||||||||||||||||||
Sbjct: 44489 agctcttcaacagaagctgt 44508



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 522   agctcttcaacagaagctgt 541
             ||||||||||||||||||||
Sbjct: 44489 agctcttcaacagaagctgt 44508

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>emb|Z36752.1|CEF35H8 Caenorhabditis elegans Cosmid F35H8, complete sequence
          Length = 38383

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   agaagatgatgaagacgagt 123
             ||||||||||||||||||||
Sbjct: 31855 agaagatgatgaagacgagt 31836

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>emb|AL049832.3|CNS0000G Human chromosome 14 DNA sequence BAC R-63D17 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177172

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  ggagaagatgatgaagacga 121
            ||||||||||||||||||||
Sbjct: 3135 ggagaagatgatgaagacga 3154

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>gb|BC049868.1| Mus musculus cDNA clone IMAGE:5097177, containing frame-shift errors
          Length = 4667

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3371 atgaaggggggagtagatgatgaa 3394

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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 416     tgaagttgaaagcaaagaggagga 439
               ||||||||| ||||||||||||||
Sbjct: 1800895 tgaagttgagagcaaagaggagga 1800872

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>gb|M65736.1|MUSMURINC Mouse murinoglobulin mRNA, complete cds
          Length = 4597

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 93   atgaaggggggagaagatgatgaa 116
            ||||||||||||| ||||||||||
Sbjct: 3316 atgaaggggggagtagatgatgaa 3339

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>dbj|AP000353.2| Homo sapiens genomic DNA, chromosome 22q11.2, IGLL region,
             clone:KB318B8
          Length = 123828

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   tgaagcagggatggtccaga 164
             ||||||||||||||||||||
Sbjct: 28278 tgaagcagggatggtccaga 28297


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,756,713
Number of Sequences: 3902068
Number of extensions: 4756713
Number of successful extensions: 98772
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98552
Number of HSP's gapped (non-prelim): 220
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result